Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.4e-176 622.9 316 100.0
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 2.4e-144 515.8 319 82.1
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.9e-133 479.6 318 77.0
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 4.7e-132 474.9 318 75.8
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.1e-93 347.4 314 58.6
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 7.3e-93 344.7 259 67.2
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.5e-90 337.0 320 55.6
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 3.8e-89 332.4 320 56.2
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 8.4e-89 331.3 296 57.1
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.2e-88 328.9 312 55.1
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 9.3e-88 327.8 297 56.6
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.6e-87 327.0 325 53.2
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.3e-86 323.9 317 51.4
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 3.0e-86 322.8 323 52.6
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 6.6e-86 321.6 316 53.8
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 8.7e-86 321.2 317 50.8
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 8.7e-86 321.2 317 50.8
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 7.3e-85 318.2 320 52.8
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 2.1e-84 316.6 310 53.2
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 2.1e-84 316.6 323 53.6
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 1.1e-83 314.3 281 56.2
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 1.1e-83 314.3 314 52.9
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 1.2e-82 310.8 321 52.0
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.2e-82 310.8 317 51.7
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 2.0e-82 310.1 312 52.6
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 3.4e-82 309.3 322 53.1
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 7.6e-82 308.1 317 50.2
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.9e-82 307.8 312 52.6
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 1.7e-81 307.0 314 53.5
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 2.2e-81 306.6 315 53.0
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 4.9e-81 305.4 321 50.8
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.4e-80 303.1 313 51.8
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.4e-80 303.1 317 51.1
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 3.2e-80 302.8 322 51.6
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 5.4e-80 302.0 301 52.8
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 7.1e-80 301.6 312 51.6
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.6e-79 300.4 325 50.2
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 3.5e-79 299.3 316 49.1
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.7e-78 297.0 281 55.2
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.7e-78 297.0 312 49.7
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.7e-78 297.0 317 53.0
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 5.1e-78 295.4 325 49.8
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 5.6e-77 292.0 342 48.2
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 7.3e-77 291.6 317 50.2
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 7.3e-77 291.6 318 49.7
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 1.6e-76 290.4 318 46.9
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 2.1e-76 290.0 320 48.1
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 2.8e-76 289.7 323 49.8
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 2.8e-76 289.7 310 47.4
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 3.6e-76 289.3 319 48.6
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 3.6e-76 289.3 318 46.9
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 4.8e-76 288.9 290 53.1
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 6.2e-76 288.5 315 50.8
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.8e-75 287.0 312 47.4
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 1.8e-75 287.0 297 52.9
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.4e-75 286.6 323 48.0
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 3.1e-75 286.2 301 50.2
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 3.1e-75 286.2 313 48.9
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 4.0e-75 285.8 320 45.9
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 4.0e-75 285.8 320 45.9
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 4.0e-75 285.8 320 45.9
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 5.3e-75 285.4 325 48.3
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 6.9e-75 285.0 313 46.6
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 9.0e-75 284.6 290 51.7
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.2e-74 284.3 313 47.6
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.2e-74 284.3 318 48.1
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 2.0e-74 283.5 290 51.0
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 2.6e-74 283.1 320 45.9
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 2.6e-74 283.1 320 45.9
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 2.6e-74 283.1 313 45.4
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 3.4e-74 282.7 317 49.8
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 5.8e-74 282.0 315 49.8
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 5.8e-74 282.0 310 45.2
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 7.6e-74 281.6 314 51.0
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 9.9e-74 281.2 323 46.1
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 9.9e-74 281.2 275 53.8
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 9.9e-74 281.2 324 47.8
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.3e-73 280.8 321 46.4
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.3e-73 280.8 321 46.4
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.3e-73 280.8 321 46.4
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.3e-73 280.8 313 47.6
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.7e-73 280.4 313 46.6
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.7e-73 280.4 313 47.9
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 1.7e-73 280.4 315 46.7
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 2.9e-73 279.6 321 46.4
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 3.8e-73 279.3 319 46.1
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 4.9e-73 278.9 313 47.6
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 4.9e-73 278.9 314 46.8
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 6.4e-73 278.5 314 46.2
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 6.4e-73 278.5 315 46.3
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 8.4e-73 278.1 313 47.0
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 8.4e-73 278.1 310 47.4
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.1e-72 277.7 316 47.8
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.4e-72 277.3 323 45.2
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 1.4e-72 277.3 321 45.8
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 1.4e-72 277.3 321 45.8
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 1.9e-72 276.9 314 47.1
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 2.4e-72 276.6 321 46.1
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 4.2e-72 275.8 321 45.5
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 7.9e-71 271.6 324 45.1
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 1.0e-70 271.2 301 47.8
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 1.3e-70 270.8 298 46.6
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 1.3e-70 270.8 310 46.5
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.8e-70 270.4 317 46.4
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 2.3e-70 270.0 321 46.4
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 3.0e-70 269.6 303 48.2
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 3.9e-70 269.2 329 46.8
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 8.7e-70 268.1 303 48.2
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 1.5e-69 267.3 314 44.9
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 2.5e-69 266.5 316 47.5
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 4.3e-69 265.8 281 49.1
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 7.4e-69 265.0 313 45.4
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 1.3e-68 264.2 312 43.3
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.6e-68 263.8 324 44.4
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.1e-68 263.5 292 49.0
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 2.1e-68 263.5 310 45.8
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.8e-67 260.4 326 43.9
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 9.0e-67 258.1 258 50.8
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.5e-66 257.3 258 50.8
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 2.0e-66 256.9 325 44.6
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 5.8e-66 255.4 369 42.3
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 7.6e-66 255.0 317 44.8
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.3e-65 254.2 181 74.0
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 2.5e-64 250.0 322 45.0
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 3.2e-64 249.6 421 37.5
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 5.5e-64 248.8 314 43.3
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.2e-63 247.7 315 44.4
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 2.1e-63 246.9 315 43.2
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 2.7e-63 246.5 321 44.9
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 4.6e-63 245.7 316 43.7
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 6.0e-63 245.4 261 51.3
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 2.8e-60 236.5 317 42.6
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 3.4e-58 229.6 282 45.4
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 7.6e-58 228.4 320 42.5
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 2.6e-50 203.4 315 40.6
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 7.7e-50 201.8 208 52.4
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 4.3e-45 186.0 226 47.8
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 2.1e-39 167.2 245 36.7
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 3.0e-38 163.3 212 42.9
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 1.5e-37 161.0 295 35.3
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 4.1e-35 152.9 164 47.6
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 7.2e-32 142.1 162 46.3
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 1.0e-30 138.3 168 45.8
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.4e-30 137.9 305 30.8
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.1e-29 134.8 309 27.2
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 1.5e-29 134.4 310 33.5
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 4.2e-24 116.3 134 41.8
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.2e-23 114.8 134 41.0
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 6.3e-20 102.4 108 47.2
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.0e-18 97.4 118 41.5
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.8e-17 93.2 82 53.7
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.8e-17 93.2 82 53.7
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 7.2e-16 89.0 88 46.6
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.4e-16 88.6 95 46.3
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 1.3e-12 78.2 141 36.9
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 4.1e-11 73.2 95 36.8
EL10Ac1g00384 Beta vulgaris HOM05D040465 ORTHO05D088723 1.6e-10 71.2 89 47.2
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 1.6e-10 71.2 66 45.5
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 1.6e-10 71.2 66 45.5
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 1.3e-09 68.2 68 42.6
EL10Ac9g20815 Beta vulgaris HOM05D040465 ORTHO05D089399 2.9e-09 67.0 39 76.9
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 8.6e-09 65.5 98 39.8
EL10Ac2g04014 Beta vulgaris HOM05D040465 ORTHO05D088238 2.5e-08 63.9 38 81.6


User provided reference genes

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