Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 6.4e-224 780.4 387 100.0
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 1.1e-188 663.3 386 83.4
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 2.7e-174 615.5 386 78.5
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 3.7e-163 578.6 386 71.2
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 4.5e-161 571.6 385 71.7
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 3.8e-160 568.5 380 71.8
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 8.5e-160 567.4 380 71.1
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 2.7e-158 562.4 386 69.2
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 4.7e-158 561.6 386 71.0
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 8.0e-158 560.8 386 69.4
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 9.7e-156 553.9 386 69.4
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 9.7e-156 553.9 388 68.6
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 4.8e-155 551.6 383 69.2
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.8e-155 551.6 386 69.2
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 6.3e-155 551.2 398 66.3
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.8e-154 549.7 386 68.7
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 2.4e-154 549.3 386 68.7
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 3.1e-154 548.9 387 68.2
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 5.3e-154 548.1 386 66.8
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 1.7e-152 543.1 386 66.3
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 3.8e-152 542.0 381 67.2
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 5.0e-152 541.6 386 67.4
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 6.5e-152 541.2 386 67.1
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 8.5e-152 540.8 381 68.8
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 1.1e-151 540.4 386 68.4
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 2.5e-151 539.3 386 66.8
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 3.2e-151 538.9 389 67.9
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 4.2e-151 538.5 389 67.6
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 5.5e-151 538.1 389 67.4
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 5.5e-151 538.1 386 67.6
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 2.1e-150 536.2 386 66.8
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 4.7e-150 535.0 330 77.6
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 6.1e-150 534.6 386 70.7
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 8.0e-150 534.3 386 66.3
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 1.4e-149 533.5 386 67.4
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 2.3e-149 532.7 386 66.3
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 5.2e-149 531.6 387 66.7
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 8.8e-149 530.8 387 65.9
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 1.2e-148 530.4 386 66.8
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 1.5e-148 530.0 389 66.6
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 1.5e-148 530.0 386 66.1
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 4.4e-148 528.5 384 67.4
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 4.4e-148 528.5 381 66.4
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 5.7e-148 528.1 386 66.3
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 5.7e-148 528.1 387 66.4
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 8.2e-147 524.2 389 65.8
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 1.8e-146 523.1 386 65.3
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 1.2e-145 520.4 389 65.8
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 2.0e-145 519.6 407 63.9
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 2.0e-145 519.6 387 65.4
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 2.0e-145 519.6 386 65.3
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 2.7e-145 519.2 387 65.9
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 2.7e-145 519.2 386 65.8
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 3.5e-145 518.8 401 63.1
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 4.5e-145 518.5 406 63.8
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 5.9e-145 518.1 385 65.5
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 5.9e-145 518.1 387 64.9
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 5.9e-145 518.1 387 65.1
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 5.0e-144 515.0 386 64.5
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 6.5e-144 514.6 386 65.5
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 1.1e-143 513.8 386 65.8
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 1.9e-143 513.1 388 64.4
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 2.5e-143 512.7 386 63.7
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 5.5e-143 511.5 443 58.5
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 1.2e-142 510.4 386 63.5
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 6.1e-142 508.1 386 63.2
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 8.0e-142 507.7 386 62.7
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 1.4e-141 506.9 386 63.0
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 5.2e-141 505.0 381 65.1
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 5.2e-141 505.0 387 65.1
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 6.8e-141 504.6 462 56.7
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 2.0e-140 503.1 387 64.3
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 1.3e-139 500.4 356 67.4
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 1.7e-139 500.0 386 62.7
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 1.1e-138 497.3 386 62.7
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 7.0e-138 494.6 421 59.6
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 1.2e-137 493.8 360 69.7
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 3.5e-137 492.3 386 61.9
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 5.0e-136 488.4 421 58.7
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 1.9e-135 486.5 387 60.7
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 3.3e-135 485.7 380 61.1
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 1.0e-133 480.7 354 65.5
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 5.2e-133 478.4 498 51.2
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 8.6e-128 461.1 442 53.8
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 4.7e-126 455.3 383 60.3
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 6.4e-123 444.9 358 61.7
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 8.3e-123 444.5 350 61.1
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.9e-122 443.4 432 54.2
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 2.2e-115 419.9 386 55.7
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 6.0e-113 411.8 283 69.3
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 1.4e-109 400.6 308 62.0
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 3.1e-109 399.4 272 70.6
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 9.2e-106 387.9 393 52.4
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.2e-98 362.8 290 63.1
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 5.1e-96 355.5 401 45.4
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 4.7e-94 349.0 397 45.8
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 3.9e-88 329.3 287 55.7
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.4e-85 320.9 376 45.2
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 3.8e-83 312.8 245 63.3
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 1.4e-82 310.8 220 66.8
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 1.5e-76 290.8 225 63.1
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 2.6e-76 290.0 478 36.4
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 3.5e-73 279.6 230 58.7
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.5e-71 273.5 372 39.2
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 3.1e-69 266.5 207 63.3
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 9.7e-63 245.0 314 41.1
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 6.1e-49 199.1 138 68.1
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 8.0e-41 172.2 136 64.0
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 6.7e-40 169.1 527 24.9
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 6.3e-30 136.0 104 60.6
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 1.0e-27 128.6 171 42.1
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 1.7e-27 127.9 80 75.0
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.2e-27 127.5 114 57.0
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 2.2e-27 127.5 79 77.2
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.0e-27 126.3 114 57.9
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 5.0e-27 126.3 111 52.3
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 6.5e-27 125.9 105 55.2
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.1e-26 125.2 114 56.1
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.1e-26 125.2 114 56.1
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.1e-26 125.2 114 56.1
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.9e-26 124.4 114 56.1
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.9e-26 124.4 77 76.6
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.5e-26 122.9 78 73.1
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.0e-24 118.6 80 67.5
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.0e-24 116.7 80 66.2
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.6e-23 114.0 75 69.3
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 3.8e-19 100.1 131 44.3
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-17 95.1 141 42.6
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.6e-17 94.7 60 75.0
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 2.1e-17 94.4 71 59.2
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 3.6e-17 93.6 105 46.7
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 1.4e-16 91.7 67 58.2
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.8e-15 85.5 57 64.9
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 9.8e-15 85.5 57 64.9
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.8e-14 84.0 57 63.2
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.7e-12 77.4 57 61.4
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 2.7e-12 77.4 53 69.8
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 7.8e-12 75.9 57 64.9
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.3e-11 74.3 57 56.1
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 1.0e-08 65.5 74 41.9
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 4.0e-08 63.5 80 43.8
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 3.4e-07 60.5 58 44.8
AL2G24330 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 1.3e-06 58.5 34 79.4
TPR.G3472 Trifolium pratense HOM05D002536 ORTHO05D000008 8.3e-06 55.8 34 73.5


User provided reference genes

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