Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 2.9e-28 127.9 66 100.0
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 5.4e-22 107.1 65 84.6
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.6e-21 105.5 65 83.1
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.4e-17 92.4 65 73.8
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.3e-12 75.1 59 62.7
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 1.5e-11 72.4 64 57.8
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.5e-11 71.6 66 56.1
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 3.3e-11 71.2 58 63.8
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 5.6e-11 70.5 59 62.7
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 7.3e-11 70.1 66 59.1
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.1e-10 68.6 59 57.6
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 2.1e-10 68.6 59 57.6
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 2.8e-10 68.2 58 60.3
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 4.7e-10 67.4 59 57.6
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 6.1e-10 67.0 62 59.7
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 6.1e-10 67.0 55 61.8
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 6.1e-10 67.0 59 55.9
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 6.1e-10 67.0 53 64.2
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 6.1e-10 67.0 53 62.3
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 8.0e-10 66.6 54 63.0
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 8.0e-10 66.6 60 58.3
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 1.0e-09 66.2 58 56.9
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 1.0e-09 66.2 54 63.0
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.4e-09 65.9 64 56.2
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.4e-09 65.9 66 56.1
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.4e-09 65.9 57 56.1
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.4e-09 65.9 57 56.1
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 1.4e-09 65.9 54 61.1
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.4e-09 65.9 63 57.1
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 1.8e-09 65.5 58 55.2
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.1e-09 64.7 51 60.8
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.1e-09 64.7 51 60.8
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 3.1e-09 64.7 54 61.1
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 3.1e-09 64.7 54 61.1
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 4.0e-09 64.3 58 56.9
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 4.0e-09 64.3 68 52.9
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.2e-09 63.9 51 60.8
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.2e-09 63.9 51 60.8
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 6.8e-09 63.5 57 56.1
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 6.8e-09 63.5 60 55.0
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 6.8e-09 63.5 59 52.5
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 6.8e-09 63.5 59 55.9
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 8.9e-09 63.2 63 52.4
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 8.9e-09 63.2 54 61.1
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 8.9e-09 63.2 59 54.2
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 8.9e-09 63.2 59 50.8
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 1.2e-08 62.8 54 55.6
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 1.2e-08 62.8 58 55.2
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 1.5e-08 62.4 58 56.9
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.5e-08 62.4 54 53.7
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 1.5e-08 62.4 58 55.2
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 1.5e-08 62.4 59 50.8
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.5e-08 62.4 53 60.4
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.5e-08 62.4 53 60.4
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 2.0e-08 62.0 58 56.9
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 2.0e-08 62.0 54 57.4
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 2.6e-08 61.6 58 56.9
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 2.6e-08 61.6 58 56.9
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 2.6e-08 61.6 58 56.9
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 2.6e-08 61.6 59 57.6
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 2.6e-08 61.6 58 53.4
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 3.4e-08 61.2 58 55.2
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 3.4e-08 61.2 52 57.7
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.4e-08 61.2 54 55.6
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 3.4e-08 61.2 58 55.2
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 3.4e-08 61.2 52 57.7
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 3.4e-08 61.2 52 57.7
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 3.4e-08 61.2 58 51.7
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 4.4e-08 60.8 58 53.4
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 4.4e-08 60.8 59 50.8
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 4.4e-08 60.8 52 57.7
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 4.4e-08 60.8 52 55.8
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.4e-08 60.8 59 52.5
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.4e-08 60.8 59 52.5
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 4.4e-08 60.8 58 55.2
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 4.4e-08 60.8 54 57.4
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 5.8e-08 60.5 58 55.2
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 5.8e-08 60.5 58 55.2
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 5.8e-08 60.5 61 50.8
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 5.8e-08 60.5 54 53.7
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 5.8e-08 60.5 58 55.2
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 7.5e-08 60.1 58 53.4
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 7.5e-08 60.1 54 59.3
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 7.5e-08 60.1 54 59.3
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 7.5e-08 60.1 54 59.3
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 7.5e-08 60.1 58 53.4
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 7.5e-08 60.1 54 55.6
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 7.5e-08 60.1 59 49.2
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 9.8e-08 59.7 53 58.5
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 9.8e-08 59.7 53 58.5
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 9.8e-08 59.7 52 57.7
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 9.8e-08 59.7 53 56.6
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 9.8e-08 59.7 59 49.2
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 9.8e-08 59.7 59 49.2
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 9.8e-08 59.7 60 50.0
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.3e-07 59.3 59 49.2
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 1.3e-07 59.3 58 50.0
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.3e-07 59.3 54 55.6
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 1.3e-07 59.3 58 50.0
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.7e-07 58.9 53 58.5
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 1.7e-07 58.9 54 55.6
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 1.7e-07 58.9 54 51.9
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 1.7e-07 58.9 58 51.7
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.7e-07 58.9 59 49.2
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 2.2e-07 58.5 49 59.2
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 3.7e-07 57.8 53 52.8
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.7e-07 57.8 58 50.0
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 3.7e-07 57.8 58 50.0
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 3.7e-07 57.8 52 55.8
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 3.7e-07 57.8 58 48.3
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 4.9e-07 57.4 58 53.4
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 4.9e-07 57.4 51 52.9
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 4.9e-07 57.4 58 48.3
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.9e-07 57.4 54 51.9
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.9e-07 57.4 54 51.9
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 6.4e-07 57.0 59 52.5
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 8.3e-07 56.6 58 48.3
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 8.3e-07 56.6 63 50.8
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 1.1e-06 56.2 53 52.8
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 1.1e-06 56.2 51 52.9
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 1.1e-06 56.2 53 49.1
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 1.1e-06 56.2 54 48.1
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 1.1e-06 56.2 59 55.9
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 1.4e-06 55.8 58 51.7
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 2.4e-06 55.1 58 46.6
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 3.2e-06 54.7 58 51.7
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 4.1e-06 54.3 58 51.7
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 4.1e-06 54.3 58 51.7
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 4.1e-06 54.3 58 51.7
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 4.1e-06 54.3 54 48.1
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 4.1e-06 54.3 54 48.1
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 7.0e-06 53.5 58 51.7
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 7.0e-06 53.5 58 51.7
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 7.0e-06 53.5 55 49.1
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 9.2e-06 53.1 50 52.0


User provided reference genes

Program Settings