Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04256 Beta vulgaris HOM05D006817 ORTHO05D008603 3.2e-276 954.5 508 100.0
Ah.16g104230 Amaranthus hybridus HOM05D006817 ORTHO05D008603 1.2e-217 760.0 529 79.2
AUR62003430 Chenopodium quinoa HOM05D006817 ORTHO05D008603 1.2e-193 680.2 532 73.1
Sc11g0005730 Simmondsia chinensis HOM05D006817 ORTHO05D008603 1.1e-188 663.7 493 74.2
AUR62012358 Chenopodium quinoa HOM05D006817 ORTHO05D008603 1.5e-185 653.3 468 77.8
CSS0030257 Camellia sinensis var. sinensis HOM05D006817 ORTHO05D008603 2.1e-182 642.9 497 68.6
TAR623G0065 Trochodendron aralioides HOM05D006817 ORTHO05D008603 8.8e-181 637.5 496 69.6
Thecc.10G176900 Theobroma cacao HOM05D006817 ORTHO05D008603 2.0e-180 636.3 496 68.1
Potri.019G048700 Populus trichocarpa HOM05D006817 ORTHO05D008603 2.8e-179 632.5 496 69.8
Actinidia00992 Actinidia chinensis HOM05D006817 ORTHO05D008603 4.8e-179 631.7 496 66.9
GSVIVG01032704001 Vitis vinifera HOM05D006817 ORTHO05D008603 1.3e-176 623.6 496 68.1
Ciclev10031264m.g Citrus clementina HOM05D006817 ORTHO05D008603 2.9e-176 622.5 506 66.6
Atru.chr12.157 Acer truncatum HOM05D006817 ORTHO05D008603 6.5e-176 621.3 493 68.4
PGR044G0301 Punica granatum HOM05D006817 ORTHO05D008603 1.9e-175 619.8 495 67.7
Nn2g10348 Nelumbo nucifera HOM05D006817 ORTHO05D008603 7.2e-175 617.8 498 67.7
Gohir.A10G180300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 2.1e-174 616.3 504 65.3
Eucgr.J00131 Eucalyptus grandis HOM05D006817 ORTHO05D008603 6.1e-174 614.8 496 67.3
TWI09G1614 Tripterygium wilfordii HOM05D006817 ORTHO05D008603 6.1e-174 614.8 495 66.7
Gorai.011G210100 Gossypium raimondii HOM05D006817 ORTHO05D008603 3.0e-173 612.5 504 65.1
arahy.Tifrunner.gnm1.ann1.6QBV89 Arachis hypogaea HOM05D006817 ORTHO05D008603 1.5e-172 610.1 491 66.0
arahy.Tifrunner.gnm1.ann1.6ZT9VY Arachis hypogaea HOM05D006817 ORTHO05D008603 1.5e-172 610.1 491 66.0
Migut.F00593 Erythranthe guttata HOM05D006817 ORTHO05D008603 2.2e-171 606.3 510 64.7
Prupe.2G261900 Prunus persica HOM05D006817 ORTHO05D008603 4.8e-171 605.1 495 65.9
Phvul.001G074700 Phaseolus vulgaris HOM05D006817 ORTHO05D008603 6.3e-171 604.7 494 65.6
Rhsim09G0184300 Rhododendron simsii HOM05D006817 ORTHO05D008603 1.4e-170 603.6 502 64.9
Sopen06g015650 Solanum pennellii HOM05D006817 ORTHO05D008603 1.4e-170 603.6 494 67.0
Nitab4.5_0011715g0010 Nicotiana tabacum HOM05D006817 ORTHO05D008603 1.8e-170 603.2 508 64.4
CAN.G169.4 Capsicum annuum HOM05D006817 ORTHO05D008603 2.4e-170 602.8 508 65.2
Peaxi162Scf00739g00017 Petunia axillaris HOM05D006817 ORTHO05D008603 3.1e-170 602.4 519 64.4
Solyc06g050210.3 Solanum lycopersicum HOM05D006817 ORTHO05D008603 4.1e-170 602.1 494 66.8
Aqoxy4G02362 Aquilegia oxysepala HOM05D006817 ORTHO05D008603 5.3e-170 601.7 497 66.8
CsaV3_5G010750 Cucumis sativus L. HOM05D006817 ORTHO05D008603 1.2e-169 600.5 491 66.8
THA.LOC104816518 Tarenaya hassleriana HOM05D006817 ORTHO05D008603 1.2e-169 600.5 512 63.5
ClCG07G004850 Citrullus lanatus HOM05D006817 ORTHO05D008603 2.6e-169 599.4 493 65.7
Lj5g0023407 Lotus japonicus HOM05D006817 ORTHO05D008603 2.6e-169 599.4 494 64.6
Glyma.19G067100 Glycine max HOM05D006817 ORTHO05D008603 4.5e-169 598.6 494 66.2
MELO3C020113.2 Cucumis melo HOM05D006817 ORTHO05D008603 7.7e-169 597.8 494 66.4
COL.COLO4_10038 Corchorus olitorius HOM05D006817 ORTHO05D008603 2.2e-168 596.3 480 68.5
TPR.G24539 Trifolium pratense HOM05D006817 ORTHO05D008603 2.9e-168 595.9 495 65.5
Sed0020006 Sechium edule HOM05D006817 ORTHO05D008603 1.1e-167 594.0 496 66.1
PSO170G5674 Papaver somniferum HOM05D006817 ORTHO05D008603 2.5e-167 592.8 494 66.8
Psat6g035880 Pisum sativum HOM05D006817 ORTHO05D008603 3.2e-167 592.4 490 64.7
Oeu036532.1 Olea europaea HOM05D006817 ORTHO05D008603 4.2e-167 592.0 509 63.7
vmacro09974 Vaccinium macrocarpon HOM05D006817 ORTHO05D008603 4.2e-167 592.0 501 64.7
MBI15_g27349_MAGBIO Magnolia biondii HOM05D006817 ORTHO05D008603 1.2e-166 590.5 559 60.5
MD01G1164100 Malus domestica HOM05D006817 ORTHO05D008603 1.2e-166 590.5 494 64.6
Thhalv10013352m.g Eutrema salsugineum HOM05D006817 ORTHO05D008603 1.6e-166 590.1 494 66.0
Gohir.D10G187300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 2.7e-166 589.3 504 63.1
A10p30880 Brassica napus HOM05D006817 ORTHO05D008603 3.0e-165 585.9 516 63.2
BcaC06g32240 Brassica carinata HOM05D006817 ORTHO05D008603 6.7e-165 584.7 490 65.5
Medtr1g007630 Medicago truncatula HOM05D006817 ORTHO05D008603 2.0e-164 583.2 495 64.2
BraA10t45133Z Brassica rapa HOM05D006817 ORTHO05D008603 7.5e-164 581.3 516 63.4
C09p71390 Brassica napus HOM05D006817 ORTHO05D008603 2.2e-163 579.7 490 65.3
BolC9t59902H Brassica oleracea HOM05D006817 ORTHO05D008603 2.2e-163 579.7 495 64.4
MSTRG.27274 Avicennia marina HOM05D006817 ORTHO05D008603 2.8e-163 579.3 501 62.9
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 6.3e-163 578.2 490 65.7
Sp6g37510 Schrenkiella parvula HOM05D006817 ORTHO05D008603 8.3e-163 577.8 504 63.7
Lalb_Chr22g0360921 Lupinus albus HOM05D006817 ORTHO05D008603 9.1e-162 574.3 493 63.1
Cc02_g05530 Coffea canephora HOM05D006817 ORTHO05D008603 2.0e-161 573.2 496 64.3
HPP92_019064 Vanilla planifolia HOM05D006817 ORTHO05D008603 5.5e-159 565.1 489 62.2
ECA232G4264 Erigeron canadensis HOM05D006817 ORTHO05D008603 7.2e-159 564.7 501 59.9
CDE04G2280 Ceratophyllum demersum HOM05D006817 ORTHO05D008603 2.7e-158 562.8 491 62.3
Cpa.g.sc19.86 Carica papaya HOM05D006817 ORTHO05D008603 1.5e-156 557.0 492 62.0
Lsat_1_v5_gn_9_59361 Lactuca sativa HOM05D006817 ORTHO05D008603 2.6e-156 556.2 498 61.0
Manes.10G004900 Manihot esculenta HOM05D006817 ORTHO05D008603 4.4e-156 555.4 497 62.4
Os12g0112300 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 4.4e-156 555.4 493 62.1
Zm00001eb406320 Zea mays HOM05D006817 ORTHO05D008603 3.7e-155 552.4 493 61.5
PSO017G6024 Papaver somniferum HOM05D006817 ORTHO05D008603 2.4e-154 549.7 456 67.8
ATR0681G057 Amborella trichopoda HOM05D006817 ORTHO05D008603 5.4e-154 548.5 490 63.1
Cfa001223 Carpinus fangiana HOM05D006817 ORTHO05D008603 7.7e-153 544.7 440 69.3
HanXRQChr15g0493791 Helianthus annuus HOM05D006817 ORTHO05D008603 3.8e-152 542.3 475 61.9
QL08p064576 Quercus lobata HOM05D006817 ORTHO05D008603 5.5e-151 538.5 456 66.4
DCAR_014588 Daucus carota HOM05D006817 ORTHO05D008603 1.0e-149 534.3 498 60.2
FAN03G2834 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.1e-146 524.2 541 56.9
HanXRQChr08g0222561 Helianthus annuus HOM05D006817 ORTHO05D008603 1.1e-146 524.2 516 56.4
FAN10G2384 Fragaria x ananassa HOM05D006817 ORTHO05D008603 2.9e-144 516.2 449 65.3
Haze_17339 Corylus avellana HOM05D006817 ORTHO05D008603 1.1e-143 514.2 476 62.8
FAN01G1353 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.0e-141 507.7 454 63.7
CANSAT56G1261 Cannabis sativa HOM05D006817 ORTHO05D008603 2.0e-137 493.4 461 62.5
SGA_v2.0_scaffold44G16643 Striga asiatica HOM05D006817 ORTHO05D008603 3.5e-137 492.7 493 58.2
Lj8A57G58 Lonicera japonica HOM05D006817 ORTHO05D008603 1.0e-136 491.1 404 68.3
Aa31LG11G6330 Aethionema arabicum HOM05D006817 ORTHO05D008603 9.5e-135 484.6 490 58.6
CiPaw.02G198400 Carya illinoinensis HOM05D006817 ORTHO05D008603 3.6e-134 482.6 412 65.5
AUR62031486 Chenopodium quinoa HOM05D006817 ORTHO05D008603 2.3e-133 479.9 514 59.7
Sabra19G0058300 Salix brachista HOM05D000055 ORTHO05D000057 3.2e-130 469.5 467 58.9
FvH4_7g25670 Fragaria vesca HOM05D006817 ORTHO05D008603 7.8e-129 464.9 429 60.6
CARHR207930 Cardamine hirsuta HOM05D006817 ORTHO05D008603 7.8e-121 438.3 374 63.1
MD07G1231900 Malus domestica HOM05D006817 ORTHO05D008603 6.2e-110 402.1 362 62.2
AT5G05310 Arabidopsis thaliana HOM05D006817 ORTHO05D008603 1.1e-109 401.4 337 64.4
Pp3c22_2490 Physcomitrium patens HOM05D006817 ORTHO05D008603 4.0e-93 346.3 496 44.4
Ca_12776_v3 Cicer arietinum L. HOM05D006817 ORTHO05D008603 4.9e-91 339.3 292 64.4
RcHm_v2.0_Chr1g0371891 Rosa chinensis HOM05D006817 ORTHO05D008603 3.3e-87 326.6 253 70.8
unitig_46.g18743 Utricularia gibba HOM05D006817 ORTHO05D008603 1.2e-84 318.2 353 51.6
Carub.0006s0424 Capsella rubella HOM05D006817 ORTHO05D008603 7.6e-84 315.5 286 61.5
VMungo0647G0362 Vigna mungo HOM05D006817 ORTHO05D008603 3.9e-72 276.6 252 61.9
Nitab4.5_0000109g0530 Nicotiana tabacum HOM05D006817 ORTHO05D008603 6.9e-69 265.8 250 58.4
SEGI_05100 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 8.2e-62 242.3 217 56.2
MD05G1328700 Malus domestica HOM05D006817 ORTHO05D008603 6.5e-59 232.6 249 57.8
RcHm_v2.0_Chr1g0371881 Rosa chinensis HOM05D006817 ORTHO05D008603 1.4e-56 224.9 163 68.7
VMungo0647G0650 Vigna mungo HOM05D006817 ORTHO05D008603 6.7e-56 222.6 205 58.0
MSTRG.24128 Avicennia marina HOM05D006817 ORTHO05D008603 3.8e-51 206.8 151 67.5
QL10p038395 Quercus lobata HOM05D006817 ORTHO05D008603 1.3e-46 191.8 184 59.8
MD07G1231800 Malus domestica HOM05D006817 ORTHO05D008603 3.1e-45 187.2 148 64.2
Oeu020109.1 Olea europaea HOM05D006817 ORTHO05D008603 4.2e-42 176.8 133 65.4
Cre08.g361000 Chlamydomonas reinhardtii HOM05D006817 ORTHO05D008603 2.0e-36 157.9 492 30.5
QL05p063879 Quercus lobata HOM05D006817 ORTHO05D008603 3.5e-36 157.1 152 59.2
SEGI_41528 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 1.0e-32 145.6 155 56.1
QL06p040335 Quercus lobata HOM05D006817 ORTHO05D008603 4.6e-28 130.2 119 67.2
QL03p030054 Quercus lobata HOM05D006817 ORTHO05D008603 1.3e-27 128.6 99 76.8
FvH4_7g25690 Fragaria vesca HOM05D006817 ORTHO05D008603 1.1e-26 125.6 86 77.9
QL09p047975 Quercus lobata HOM05D000176 ORTHO05D000106 9.5e-26 122.5 112 66.1
Hund15836 Selenicereus undatus HOM05D006817 ORTHO05D008603 1.2e-23 115.5 72 81.9
FAN06G4794 Fragaria x ananassa HOM05D006817 ORTHO05D008603 3.7e-22 110.5 77 76.6
Os11g0112900 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 4.9e-22 110.2 102 59.8
QL10p065865 Quercus lobata HOM05D006817 ORTHO05D008603 3.3e-18 97.4 93 63.4
QL08p064573 Quercus lobata HOM05D006817 ORTHO05D008603 2.1e-17 94.7 66 66.7
FAN06G1140 Fragaria x ananassa HOM05D006817 ORTHO05D008603 8.9e-16 89.4 59 81.4
MD17G1183400 Malus domestica HOM05D006817 ORTHO05D008603 1.1e-13 82.4 57 73.7
EL10Ac8g19591 Beta vulgaris HOM05D000698 ORTHO05D013944 4.4e-07 60.5 34 85.3
PGSC0003DMG400024308 Solanum tuberosum HOM05D006817 ORTHO05D008603 7.6e-07 59.7 41 63.4


User provided reference genes

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