Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 0.0e+00 1156.4 592 100.0
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 2.5e-272 941.8 592 80.1
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 5.8e-269 930.6 594 80.6
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 3.3e-264 914.8 592 79.4
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.1e-251 873.2 593 75.7
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.9e-227 792.7 595 68.9
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 4.2e-227 791.6 593 66.3
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 4.1e-222 775.0 595 67.6
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 2.5e-219 765.8 601 64.9
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 1.4e-217 760.0 598 65.4
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.8e-217 759.6 597 64.7
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 1.8e-217 759.6 594 63.3
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 3.0e-217 758.8 622 63.7
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 5.2e-217 758.1 597 64.3
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 5.2e-217 758.1 597 64.3
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 5.2e-217 758.1 629 64.2
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 3.4e-216 755.4 593 64.4
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 3.4e-216 755.4 557 69.1
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 9.8e-216 753.8 597 64.0
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 2.2e-215 752.7 592 64.7
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 4.9e-215 751.5 593 64.8
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 4.9e-215 751.5 596 65.1
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 6.3e-215 751.1 597 65.0
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 1.4e-214 750.0 597 65.3
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 4.1e-214 748.4 596 65.4
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 3.5e-213 745.3 599 64.4
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 1.0e-212 743.8 599 63.8
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 6.6e-212 741.1 594 63.8
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 6.6e-212 741.1 594 63.8
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.5e-211 740.0 594 63.3
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 5.6e-211 738.0 594 63.5
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 7.3e-211 737.6 594 63.8
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 3.6e-210 735.3 593 63.7
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 4.7e-210 734.9 595 63.9
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 6.1e-210 734.6 596 64.1
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 8.0e-210 734.2 595 62.9
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.0e-209 733.8 670 59.0
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 6.8e-209 731.1 594 63.5
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 1.2e-208 730.3 596 62.9
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.2e-208 730.3 594 61.3
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 1.5e-208 729.9 592 62.0
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 2.0e-208 729.6 595 62.7
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 3.4e-208 728.8 595 63.7
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 8.3e-207 724.2 665 57.7
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 8.3e-207 724.2 606 61.6
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 3.2e-206 722.2 595 63.2
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 9.2e-206 720.7 594 61.4
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 9.2e-206 720.7 597 62.3
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.7e-205 719.2 596 61.6
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 3.0e-204 715.7 594 61.4
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 6.6e-204 714.5 602 62.1
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 8.6e-204 714.1 593 62.6
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 7.3e-203 711.1 598 61.5
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 1.6e-202 709.9 594 60.8
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 2.8e-202 709.1 594 60.9
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 6.2e-202 708.0 630 58.9
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 4.0e-201 705.3 594 60.6
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 1.5e-200 703.4 594 60.3
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 6.4e-199 698.0 613 60.2
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 6.4e-199 698.0 605 59.8
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 2.4e-198 696.0 596 62.1
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 7.0e-198 694.5 604 58.8
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 1.2e-197 693.7 594 60.9
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 3.0e-196 689.1 598 59.7
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 3.0e-196 689.1 592 60.8
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 3.0e-196 689.1 593 60.9
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 8.6e-196 687.6 596 61.6
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 1.1e-195 687.2 599 61.3
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 9.5e-195 684.1 599 59.6
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 2.8e-194 682.6 597 60.0
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 8.1e-194 681.0 593 59.9
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 1.8e-193 679.9 597 58.8
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 2.3e-193 679.5 596 59.4
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 2.3e-193 679.5 618 58.7
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 1.5e-192 676.8 593 58.0
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 2.0e-192 676.4 599 58.6
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 4.4e-192 675.2 604 59.8
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 5.8e-192 674.9 602 58.5
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 7.5e-192 674.5 594 59.8
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 7.5e-192 674.5 595 58.3
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 9.9e-192 674.1 535 64.7
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 1.3e-191 673.7 595 58.7
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 3.2e-190 669.1 596 58.4
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 3.2e-190 669.1 597 58.8
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 5.4e-190 668.3 597 58.1
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 9.2e-190 667.5 597 58.6
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 9.2e-190 667.5 597 58.6
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 1.2e-189 667.2 595 58.5
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 6.6e-188 661.4 555 60.4
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 1.8e-185 653.3 604 58.9
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 2.4e-182 642.9 595 57.8
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 5.4e-182 641.7 504 65.3
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 4.6e-181 638.6 594 56.6
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 7.8e-181 637.9 594 56.7
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 4.3e-179 632.1 555 59.8
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 2.0e-176 623.2 596 54.9
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.3e-172 610.5 577 57.0
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 3.4e-168 595.9 598 52.8
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 2.2e-167 593.2 601 53.4
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 3.2e-166 589.3 604 53.0
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 6.2e-162 575.1 600 52.8
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 1.9e-155 553.5 597 48.6
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 2.5e-155 553.1 525 56.8
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 5.7e-155 552.0 594 49.8
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 3.7e-154 549.3 525 56.2
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 4.0e-153 545.8 412 68.4
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 3.8e-151 539.3 522 56.5
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 4.9e-151 538.9 620 48.9
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 1.6e-149 533.9 467 61.2
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 1.0e-148 531.2 443 61.9
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 3.0e-140 503.1 549 52.8
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 1.8e-124 450.7 610 42.8
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.6e-120 437.6 571 44.7
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 2.3e-116 423.7 399 56.1
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 6.3e-114 415.6 600 42.2
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 9.1e-113 411.8 612 40.4
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.1e-109 400.6 279 73.1
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.3e-103 381.3 595 40.8
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 5.9e-96 355.9 304 57.6
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 2.1e-93 347.4 409 50.1
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 8.0e-93 345.5 249 70.3
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 1.9e-89 334.3 626 35.9
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 6.8e-84 315.8 343 53.4
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 1.6e-80 304.7 609 34.5
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 3.4e-75 287.0 465 41.5
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 7.3e-70 269.2 250 59.6
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 1.1e-65 255.4 425 40.9
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 6.4e-58 229.6 283 47.0
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 1.8e-52 211.5 131 69.5
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 4.5e-51 206.8 167 62.9
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.6e-48 198.4 287 42.5
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 2.6e-43 181.0 287 40.4
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 1.3e-42 178.7 562 28.5
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 1.4e-41 175.3 130 59.2
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 1.4e-36 158.7 128 62.5
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 2.6e-35 154.5 134 58.2
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 6.5e-34 149.8 388 30.9
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 1.5e-30 138.7 116 61.2
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 4.5e-27 127.1 133 44.4
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 2.9e-26 124.4 94 60.6
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 3.9e-23 114.0 80 62.5
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 1.3e-21 109.0 878 22.2
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 3.6e-16 90.9 80 61.2
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 1.1e-14 85.9 106 46.2
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 7.4e-14 83.2 88 45.5
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 6.3e-13 80.1 108 45.4
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 5.3e-12 77.0 55 58.2
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 1.0e-10 72.8 40 77.5
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 1.0e-10 72.8 40 77.5
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 5.0e-10 70.5 39 76.9
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 8.5e-10 69.7 39 76.9
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 1.9e-09 68.6 57 56.1
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 1.9e-09 68.6 57 56.1
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 1.2e-08 65.9 57 56.1
COL.COLO4_19455 Corchorus olitorius HOM05D004766 ORTHO05D006159 4.4e-06 57.4 35 80.0


User provided reference genes

Program Settings