Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 7.9e-81 304.3 228 100.0
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 7.2e-58 228.0 220 71.8
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 1.8e-53 213.4 171 80.7
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 2.4e-53 213.0 217 67.3
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 1.3e-46 190.7 155 80.0
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 4.7e-41 172.2 177 68.9
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 4.0e-40 169.1 226 58.8
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 5.2e-40 168.7 184 62.0
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 8.8e-40 167.9 189 70.4
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 9.8e-39 164.5 183 62.3
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 4.9e-38 162.2 178 63.5
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 4.9e-38 162.2 218 59.2
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 6.3e-38 161.8 217 54.4
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 1.1e-37 161.0 183 63.9
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 1.4e-37 160.6 178 64.6
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 1.8e-37 160.2 217 55.3
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 4.1e-37 159.1 220 56.4
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 7.0e-37 158.3 219 55.7
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 7.0e-37 158.3 181 60.2
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 1.6e-36 157.1 162 69.1
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 3.5e-36 156.0 183 61.7
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 5.9e-36 155.2 178 60.1
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 5.9e-36 155.2 180 60.6
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 5.9e-36 155.2 180 65.0
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 7.7e-36 154.8 225 54.2
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 1.3e-35 154.1 178 63.5
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 1.7e-35 153.7 180 58.3
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 1.7e-35 153.7 218 56.0
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 1.7e-35 153.7 218 56.0
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 1.7e-35 153.7 218 56.0
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 5.0e-35 152.1 218 56.0
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 6.6e-35 151.8 219 58.9
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 8.6e-35 151.4 217 53.9
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 1.1e-34 151.0 222 55.0
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 1.1e-34 151.0 224 53.6
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 1.9e-34 150.2 221 54.3
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 3.3e-34 149.4 176 63.1
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 4.2e-34 149.1 217 54.4
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 5.5e-34 148.7 183 60.1
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 7.2e-34 148.3 140 60.0
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 7.2e-34 148.3 220 53.6
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 1.2e-33 147.5 183 59.6
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 1.6e-33 147.1 219 53.4
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 1.6e-33 147.1 181 61.3
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 2.1e-33 146.7 180 58.3
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 2.1e-33 146.7 222 53.6
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 2.1e-33 146.7 171 63.2
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 2.8e-33 146.4 154 66.2
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 3.6e-33 146.0 160 63.8
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 3.6e-33 146.0 217 53.0
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 3.6e-33 146.0 178 60.7
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 4.7e-33 145.6 217 53.9
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 1.0e-32 144.4 183 59.0
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 1.0e-32 144.4 219 53.9
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 1.4e-32 144.1 183 58.5
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 1.8e-32 143.7 175 57.7
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 2.3e-32 143.3 175 61.1
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 3.0e-32 142.9 221 57.0
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 6.8e-32 141.7 186 59.1
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 8.9e-32 141.4 217 52.5
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 1.2e-31 141.0 168 54.2
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 3.4e-31 139.4 226 50.9
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 4.4e-31 139.0 124 75.0
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 7.5e-31 138.3 222 51.8
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 7.5e-31 138.3 217 52.1
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 1.3e-30 137.5 180 58.3
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 1.7e-30 137.1 217 53.0
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 1.7e-30 137.1 217 53.0
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 2.2e-30 136.7 174 60.9
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 2.9e-30 136.3 221 52.5
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 4.9e-30 135.6 217 51.6
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 4.9e-30 135.6 180 59.4
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 6.3e-30 135.2 129 58.9
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 8.3e-30 134.8 142 66.9
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 1.8e-29 133.7 150 64.7
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 2.4e-29 133.3 188 55.3
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 7.0e-29 131.7 219 51.1
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 9.2e-29 131.3 217 50.7
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 1.6e-28 130.6 134 57.5
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 1.6e-28 130.6 217 49.8
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 1.6e-28 130.6 218 56.9
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 1.7e-27 127.1 155 61.9
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 1.9e-26 123.6 138 65.9
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 1.2e-25 120.9 146 61.6
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 2.1e-25 120.2 219 52.5
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 3.6e-25 119.4 217 48.4
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 2.3e-24 116.7 185 53.0
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.1e-21 107.8 125 64.8
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 3.2e-21 106.3 121 52.1
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 1.0e-19 101.3 113 53.1
Gohir.D07G032851 Gossypium hirsutum HOM05D007100 ORTHO05D008958 1.3e-19 100.9 102 71.6
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 3.9e-19 99.4 115 50.4
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 5.0e-19 99.0 177 44.1
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 1.9e-18 97.1 86 58.1
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 2.1e-17 93.6 143 42.7
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 3.6e-17 92.8 155 50.3
Sabra06G0199900 Salix brachista HOM05D007100 ORTHO05D008958 2.3e-16 90.1 102 72.5
Gohir.A07G028825 Gossypium hirsutum HOM05D007100 ORTHO05D008958 6.8e-16 88.6 102 69.6
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 8.9e-16 88.2 76 63.2
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 2.0e-15 87.0 88 53.4
Psat2g007880 Pisum sativum HOM05D007100 ORTHO05D008958 5.8e-15 85.5 77 62.3
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 4.1e-13 79.3 117 41.9
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 4.1e-13 79.3 117 41.0
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 5.4e-13 79.0 122 40.2
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 9.2e-13 78.2 117 41.9
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 2.7e-12 76.6 166 28.9
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.9e-10 70.5 102 60.8
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 9.5e-10 68.2 139 40.3
AUR62039691 Chenopodium quinoa HOM05D026575 ORTHO05D028765 6.2e-09 65.5 39 92.3
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 1.4e-08 64.3 92 40.2
AUR62044181 Chenopodium quinoa HOM05D026575 ORTHO05D028765 1.8e-08 63.9 39 89.7
RcHm_v2.0_Chr4g0429151 Rosa chinensis HOM05D007100 ORTHO05D008958 1.7e-06 57.4 60 50.0
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 2.9e-06 56.6 94 39.4


User provided reference genes

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