Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 2.9e-114 415.2 211 100.0
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 5.8e-86 321.2 212 79.7
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 6.6e-82 307.8 206 77.2
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 5.6e-81 304.7 214 75.7
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 7.6e-78 294.3 214 72.4
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 1.7e-77 293.1 207 70.5
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 1.7e-77 293.1 206 71.8
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 8.4e-77 290.8 165 88.5
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 8.4e-77 290.8 209 72.7
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 1.9e-76 289.7 197 73.6
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 3.2e-76 288.9 207 71.0
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 4.2e-76 288.5 209 71.8
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.6e-75 286.6 203 70.9
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 3.5e-75 285.4 207 71.5
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.6e-75 285.0 201 73.6
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 4.6e-75 285.0 206 71.8
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.3e-74 283.5 208 69.2
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 1.3e-74 283.5 209 70.8
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.3e-74 283.5 185 75.7
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 8.7e-74 280.8 208 71.6
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 8.7e-74 280.8 186 76.9
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 8.7e-74 280.8 207 71.5
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.1e-73 280.4 203 71.9
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 1.1e-73 280.4 208 72.1
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 1.1e-73 280.4 197 72.6
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.5e-73 280.0 190 74.2
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.5e-73 280.0 209 71.8
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.9e-73 279.6 210 69.5
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.9e-73 279.6 201 72.1
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 2.5e-73 279.3 209 68.9
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 2.5e-73 279.3 174 78.2
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 2.5e-73 279.3 213 69.5
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.3e-73 278.9 210 69.5
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 3.3e-73 278.9 201 72.6
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 4.3e-73 278.5 194 74.2
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 4.3e-73 278.5 186 74.7
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 5.6e-73 278.1 197 72.6
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 7.3e-73 277.7 200 72.0
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 7.3e-73 277.7 201 72.1
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.3e-72 276.9 190 73.7
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.3e-72 276.9 200 72.5
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.6e-72 276.6 207 69.1
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.6e-72 276.6 207 69.1
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 2.1e-72 276.2 182 73.1
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 8.1e-72 274.2 201 71.6
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 8.1e-72 274.2 201 71.6
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 8.1e-72 274.2 207 68.6
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 8.1e-72 274.2 203 69.0
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 1.1e-71 273.9 197 72.1
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 1.1e-71 273.9 207 69.6
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 1.8e-71 273.1 197 72.6
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.8e-71 273.1 190 72.6
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.4e-71 272.7 201 71.1
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 3.1e-71 272.3 210 68.6
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.3e-71 271.6 192 70.8
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 9.0e-71 270.8 194 70.1
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 1.2e-70 270.4 180 75.0
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.5e-70 270.0 198 70.7
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 2.6e-70 269.2 204 68.6
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 2.6e-70 269.2 204 70.6
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.6e-70 269.2 212 64.2
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.4e-70 268.9 209 69.4
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 3.4e-70 268.9 186 71.5
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 5.8e-70 268.1 202 67.3
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 5.8e-70 268.1 209 69.4
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 7.6e-70 267.7 209 69.4
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 9.9e-70 267.3 207 69.6
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.3e-69 266.9 213 66.2
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 1.7e-69 266.5 209 67.5
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.8e-69 265.4 209 68.4
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 3.8e-69 265.4 200 70.0
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 4.9e-69 265.0 188 69.7
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 4.9e-69 265.0 209 68.4
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 1.4e-68 263.5 200 69.5
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.4e-68 263.5 182 71.4
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 1.4e-68 263.5 203 68.5
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.9e-68 263.1 207 66.2
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.4e-68 262.7 207 67.1
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 2.4e-68 262.7 202 66.8
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.2e-68 261.9 197 70.1
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 7.1e-68 261.2 203 67.0
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 9.3e-68 260.8 211 66.8
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.2e-67 260.4 203 67.5
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 2.7e-67 259.2 204 65.7
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 3.5e-67 258.8 211 67.8
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 3.5e-67 258.8 212 67.0
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 4.6e-67 258.5 211 67.8
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 5.1e-66 255.0 206 65.0
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 5.1e-66 255.0 207 66.2
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 8.7e-66 254.2 205 62.9
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.5e-65 253.4 211 66.4
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 3.3e-65 252.3 185 71.4
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 3.3e-65 252.3 207 65.7
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 3.3e-65 252.3 292 51.0
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 4.3e-65 251.9 222 63.5
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 5.6e-65 251.5 196 68.9
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 7.3e-65 251.1 192 67.2
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 9.6e-65 250.8 195 69.2
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 1.3e-64 250.4 156 79.5
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 2.1e-64 249.6 195 64.6
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 4.8e-64 248.4 192 65.6
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 6.2e-64 248.1 167 72.5
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 1.1e-63 247.3 204 63.2
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 1.4e-63 246.9 217 64.5
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.4e-63 246.9 196 67.3
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.8e-63 246.5 162 76.5
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 5.3e-63 245.0 217 64.1
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.6e-62 242.7 198 67.2
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.4e-62 242.3 197 62.9
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 4.5e-62 241.9 195 65.1
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 5.8e-62 241.5 195 64.6
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.9e-61 239.2 161 74.5
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 3.8e-61 238.8 175 67.4
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 4.9e-61 238.4 197 64.0
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 8.4e-61 237.7 195 63.6
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 1.9e-60 236.5 178 66.3
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.3e-58 230.3 201 61.7
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 6.7e-58 228.0 161 70.2
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 6.2e-56 221.5 188 62.8
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.1e-55 220.7 165 68.5
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 4.0e-55 218.8 169 66.3
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.6e-51 205.3 199 59.3
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 3.0e-50 202.6 197 55.8
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 6.2e-48 194.9 200 57.0
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 2.6e-46 189.5 123 78.0
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 7.6e-46 188.0 120 79.2
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.7e-45 186.8 189 52.4
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 2.5e-44 183.0 173 55.5
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 9.3e-44 181.0 116 75.0
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.0e-42 177.6 123 72.4
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 2.3e-42 176.4 150 58.7
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 8.7e-42 174.5 198 52.5
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.3e-41 172.6 152 62.5
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 1.3e-40 170.6 195 52.8
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 3.7e-40 169.1 108 76.9
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.4e-39 167.2 95 82.1
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.6e-38 162.9 188 51.1
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 6.5e-37 158.3 176 50.0
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.2e-35 154.1 161 50.9
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.4e-34 150.6 149 51.7
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 2.5e-33 146.4 102 75.5
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 5.9e-30 135.2 95 69.5
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 9.7e-25 117.9 172 44.2
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 1.0e-18 97.8 55 74.5
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.8e-18 97.1 196 35.2
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 3.0e-18 96.3 70 64.3
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 5.2e-18 95.5 70 64.3
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 6.7e-18 95.1 55 74.5
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 1.1e-17 94.4 105 53.3
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 3.3e-17 92.8 176 39.2
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.7e-16 89.4 87 54.0
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 5.0e-13 79.0 39 100.0
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 1.6e-11 73.9 55 69.1
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 4.7e-11 72.4 82 46.3
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 8.0e-11 71.6 62 61.3
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 9.1e-07 58.2 64 50.0


User provided reference genes

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