Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 6.3e-260 900.2 443 100.0
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 2.3e-185 652.5 428 76.9
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.7e-167 593.2 361 80.6
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 9.1e-166 587.4 361 80.1
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 4.5e-165 585.1 500 63.0
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.1e-160 570.5 406 69.5
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.1e-160 570.5 367 76.6
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 4.4e-160 568.5 354 78.0
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 9.7e-160 567.4 406 69.2
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 1.3e-159 567.0 359 78.8
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 6.3e-159 564.7 354 78.5
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 1.8e-158 563.1 414 68.8
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 9.1e-158 560.8 335 81.2
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 3.8e-156 555.4 399 70.4
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 5.0e-156 555.1 355 77.5
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 8.5e-156 554.3 352 76.4
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 3.2e-155 552.4 392 72.2
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.2e-155 552.0 353 76.2
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 4.2e-155 552.0 354 75.1
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 3.6e-154 548.9 408 67.9
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 8.0e-154 547.7 376 70.5
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 1.8e-153 546.6 392 70.9
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 2.3e-153 546.2 406 67.5
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 3.0e-153 545.8 362 74.3
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 4.0e-153 545.4 357 74.8
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 5.2e-153 545.0 359 75.2
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 2.6e-152 542.7 412 67.0
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 3.4e-152 542.3 363 73.8
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 9.7e-152 540.8 360 74.2
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 1.3e-151 540.4 353 73.9
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.2e-151 539.7 349 75.4
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 2.2e-151 539.7 369 73.2
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 2.8e-151 539.3 428 65.7
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 3.7e-151 538.9 427 64.9
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 8.3e-151 537.7 416 66.3
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 2.4e-150 536.2 352 75.9
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 3.1e-150 535.8 363 73.0
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.3e-150 535.0 412 67.2
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 5.3e-150 535.0 407 66.8
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 7.0e-150 534.6 349 74.8
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 1.6e-149 533.5 356 74.4
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 5.9e-149 531.6 368 73.1
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 7.7e-149 531.2 422 64.7
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 7.7e-149 531.2 392 67.9
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 1.7e-148 530.0 350 73.4
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 2.2e-148 529.6 353 73.9
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 2.9e-148 529.3 347 74.1
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 5.0e-148 528.5 358 73.7
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 5.0e-148 528.5 350 73.1
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 6.5e-148 528.1 363 71.6
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 6.5e-148 528.1 350 73.4
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 8.5e-148 527.7 392 68.4
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 3.2e-147 525.8 398 65.1
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 7.2e-147 524.6 420 65.5
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 9.4e-147 524.2 355 73.0
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 2.1e-146 523.1 385 68.1
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 6.1e-146 521.5 420 63.1
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 8.0e-146 521.2 367 69.2
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 8.8e-145 517.7 359 69.9
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 4.4e-144 515.4 355 70.1
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 4.4e-144 515.4 355 70.4
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 1.3e-143 513.8 360 70.3
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 2.8e-143 512.7 357 70.3
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 6.3e-143 511.5 389 65.6
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 1.1e-142 510.8 385 65.2
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 1.1e-142 510.8 393 64.9
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 4.1e-142 508.8 357 71.4
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 4.1e-142 508.8 456 62.5
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 5.4e-142 508.4 389 66.1
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 9.1e-142 507.7 353 72.8
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.7e-141 506.1 371 69.0
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 1.0e-140 504.2 362 67.4
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 1.3e-140 503.8 328 77.1
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 1.7e-140 503.4 358 70.7
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 2.3e-140 503.1 423 62.9
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 1.1e-139 500.7 338 72.2
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 3.3e-139 499.2 375 66.4
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 7.2e-139 498.0 305 78.7
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 7.2e-139 498.0 355 68.7
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 6.1e-138 495.0 361 66.5
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.1e-138 495.0 303 78.2
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 1.8e-137 493.4 359 66.9
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 2.3e-137 493.0 415 60.7
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 4.0e-137 492.3 359 67.4
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 2.0e-136 490.0 359 66.9
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 9.8e-136 487.6 358 66.5
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.7e-135 486.9 360 68.1
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 1.7e-135 486.9 303 76.6
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 8.3e-135 484.6 348 68.1
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 4.1e-134 482.3 361 65.4
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 4.1e-134 482.3 347 66.9
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 5.4e-134 481.9 347 66.6
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 1.2e-133 480.7 362 66.0
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.2e-133 480.7 353 65.7
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 1.6e-133 480.3 358 64.8
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 4.5e-133 478.8 318 74.5
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 7.8e-133 478.0 346 66.8
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 7.8e-133 478.0 358 65.1
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 1.2e-130 470.7 351 65.5
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 4.7e-130 468.8 278 80.9
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.0e-129 467.6 303 74.6
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 7.5e-128 461.5 315 72.7
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 9.8e-128 461.1 304 72.4
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 8.3e-127 458.0 362 64.4
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 1.4e-126 457.2 331 66.2
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 1.4e-126 457.2 330 69.4
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 6.0e-125 451.8 426 58.2
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.1e-123 447.6 349 67.6
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 2.5e-123 446.4 325 68.0
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 5.6e-123 445.3 264 80.3
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 7.3e-123 444.9 359 63.2
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 2.8e-122 443.0 325 67.4
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 3.5e-117 426.0 393 59.8
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 4.3e-115 419.1 369 59.1
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 4.0e-113 412.5 325 63.4
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 9.2e-110 401.4 380 55.5
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 3.5e-109 399.4 477 45.7
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 2.5e-107 393.3 246 77.2
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 2.6e-104 383.3 250 72.0
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 2.9e-103 379.8 256 73.8
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.4e-102 377.5 222 82.0
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 4.2e-102 375.9 259 73.0
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.1e-101 373.6 378 54.2
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 6.0e-101 372.1 327 59.9
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 7.8e-101 371.7 301 64.1
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 3.9e-100 369.4 261 71.6
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.5e-99 366.7 405 49.9
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 4.8e-98 362.5 386 51.0
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 1.1e-97 361.3 379 53.3
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 8.4e-95 351.7 358 53.1
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 2.4e-94 350.1 290 61.7
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 9.3e-94 348.2 222 78.4
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 2.7e-93 346.7 297 62.3
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 2.4e-89 333.6 356 52.5
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 1.3e-87 327.8 211 74.4
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 3.8e-87 326.2 359 49.9
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 1.4e-86 324.3 249 64.3
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 3.7e-82 309.7 229 67.7
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 3.4e-80 303.1 267 59.9
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.5e-78 297.0 195 75.4
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 3.2e-78 296.6 199 75.4
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 4.2e-78 296.2 281 51.2
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 2.1e-77 293.9 193 69.4
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 3.5e-77 293.1 303 52.8
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 6.9e-73 278.9 331 48.9
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.0e-71 275.0 195 71.8
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 4.1e-65 253.1 197 65.5
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 2.1e-61 240.7 135 85.2
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 5.7e-51 206.1 174 62.6
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 7.0e-49 199.1 125 76.0
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 5.5e-46 189.5 211 51.2
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 8.0e-45 185.7 118 76.3
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 1.0e-44 185.3 362 32.3
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 5.7e-43 179.5 324 38.0
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.7e-39 167.9 335 37.3
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 1.6e-37 161.4 226 38.5
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 5.2e-36 156.4 303 31.0
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 1.7e-34 151.4 155 50.3
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 5.4e-33 146.4 90 75.6
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 2.0e-24 117.9 207 34.3
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.3e-20 104.4 85 62.4
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 1.2e-16 92.0 116 48.3
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 1.7e-15 88.2 69 56.5
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 3.9e-15 87.0 69 56.5
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 4.3e-14 83.6 67 61.2
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 5.6e-14 83.2 49 77.6
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.2e-13 82.0 57 64.9
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.0e-11 74.7 76 57.9
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 6.0e-08 63.2 50 58.0
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.3e-07 62.0 85 43.5
Glyma.04G081300 Glycine max HOM05D004081 ORTHO05D025646 1.1e-06 58.9 49 57.1
Hund03407 Selenicereus undatus HOM05D004081 ORTHO05D025646 1.1e-06 58.9 40 70.0
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.5e-06 58.5 55 49.1


User provided reference genes

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