Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1932.5 984 100.0
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1647.5 984 84.3
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1647.1 984 84.5
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1612.4 984 82.4
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1571.6 986 78.1
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1503.0 1013 76.3
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1461.8 985 72.9
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1460.3 986 73.0
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1455.7 986 71.9
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1452.2 985 71.7
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1443.3 954 73.3
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1435.6 986 71.4
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1434.9 988 71.5
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1431.0 986 71.0
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1427.5 984 71.0
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1424.5 985 70.2
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1419.1 986 69.5
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1412.9 845 82.6
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1412.9 986 69.5
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1408.7 987 69.7
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1408.3 985 70.1
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1406.3 985 69.4
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1403.3 985 69.1
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1401.0 986 69.2
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1400.2 983 69.0
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1395.9 993 69.1
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1394.4 985 69.8
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1394.0 985 68.8
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1390.6 986 68.8
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1388.6 986 68.1
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1388.2 987 69.0
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1384.4 986 67.6
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1383.2 987 68.7
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1383.2 987 69.1
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1382.9 984 68.1
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1382.9 985 68.5
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1382.1 987 68.7
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1381.7 984 68.0
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1380.5 986 67.8
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1378.2 987 68.0
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1377.1 987 68.6
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1376.7 985 68.5
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1375.1 986 67.4
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1371.7 989 67.3
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1370.5 987 67.6
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1370.1 986 66.7
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1369.8 986 67.5
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1368.2 984 67.2
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1366.7 986 67.6
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1366.3 986 67.2
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1365.5 984 68.4
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1364.7 984 68.4
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1363.2 984 67.4
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1362.4 1005 67.1
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1361.3 986 67.4
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1360.9 984 67.6
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1358.6 985 66.6
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1357.8 986 67.1
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1357.4 984 68.2
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1356.7 988 67.1
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1356.3 984 67.2
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1355.5 983 67.2
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1355.1 985 66.5
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1354.7 984 66.8
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1354.3 984 66.7
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1353.2 986 67.0
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1349.0 984 67.1
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1347.4 984 66.7
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1347.4 986 66.8
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1346.3 987 66.7
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1342.0 984 66.5
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1341.3 986 66.6
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1340.5 1009 65.2
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1340.5 986 65.8
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1333.5 986 65.7
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1333.2 985 66.4
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1332.0 986 65.6
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1331.2 989 66.2
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1330.1 989 66.1
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1326.2 985 65.5
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1326.2 986 65.2
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1322.4 985 65.3
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1320.1 988 65.6
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1319.7 985 65.7
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1319.3 986 65.4
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1317.8 993 66.1
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1317.0 999 64.7
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1313.5 986 65.1
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1309.7 984 64.4
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1309.3 1083 61.5
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1308.9 987 64.8
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1308.9 986 65.7
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1308.1 1081 60.7
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1307.7 987 64.8
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1307.4 1006 64.1
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1307.4 988 64.9
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1306.6 993 65.9
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1305.4 988 64.7
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1303.9 985 64.8
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1303.5 984 64.2
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1303.5 994 64.6
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1300.0 984 63.7
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1300.0 955 65.7
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1299.3 989 65.7
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1297.3 953 66.4
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1297.0 990 64.3
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1291.9 984 63.7
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1290.4 1013 63.1
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1288.9 988 63.7
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1285.4 1016 62.6
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1270.0 900 68.8
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1258.4 977 62.0
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1256.1 980 62.7
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1255.4 1001 62.0
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1225.3 982 61.2
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1216.1 897 66.3
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1209.9 994 61.6
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1203.0 986 60.6
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1198.0 991 59.6
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1197.2 984 61.0
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1188.3 991 59.4
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1135.6 847 65.1
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1117.1 688 80.1
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1103.6 952 58.0
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1084.7 882 61.0
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 1.8e-299 1032.7 809 60.9
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 1.1e-285 986.9 976 53.0
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 4.2e-280 968.4 995 49.2
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 2.9e-257 892.5 659 65.7
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 1.2e-250 870.5 955 49.0
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.6e-247 860.1 541 74.5
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 6.6e-233 811.6 530 77.9
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 5.8e-221 771.9 658 59.0
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 6.9e-206 721.8 883 43.0
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.9e-184 650.6 811 46.1
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 3.3e-168 596.7 362 78.2
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 8.0e-154 548.9 914 37.3
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.2e-147 526.9 420 62.1
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 3.6e-138 496.9 296 81.8
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 5.7e-136 489.6 296 79.7
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-133 480.7 828 36.1
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 5.5e-131 473.0 282 81.9
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 5.2e-113 413.3 1032 30.3
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.7e-108 398.3 256 74.2
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 2.2e-103 381.3 1016 30.9
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 7.1e-102 376.3 325 59.1
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 1.2e-101 375.6 663 38.3
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 3.0e-84 317.8 380 45.8
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 1.1e-78 299.3 319 49.2
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 9.3e-78 296.2 429 39.9
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 1.3e-74 285.8 360 43.9
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.7e-74 284.3 256 53.9
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 1.4e-62 245.7 267 48.7
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 5.9e-56 223.8 147 80.3
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 4.3e-51 207.6 184 54.3
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 6.9e-49 200.3 140 67.1
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 2.6e-48 198.4 129 72.9
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 3.8e-47 194.5 125 74.4
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 1.4e-46 192.6 1034 22.6
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 2.0e-43 182.2 105 82.9
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 3.7e-42 177.9 125 70.4
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 8.8e-36 156.8 200 49.5
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 1.1e-35 156.4 104 68.3
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 2.6e-35 155.2 104 68.3
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 2.6e-35 155.2 104 68.3
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 5.5e-30 137.5 85 78.8
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 1.3e-23 116.3 63 92.1
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 3.2e-22 111.7 82 58.5
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 1.4e-20 106.3 149 47.0
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 2.3e-20 105.5 121 52.9
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 6.8e-20 104.0 70 72.9
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 2.6e-19 102.1 63 71.4
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 3.4e-19 101.7 82 58.5
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 3.7e-18 98.2 187 34.2
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 4.8e-18 97.8 60 80.0
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 2.4e-17 95.5 193 34.7
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 4.5e-16 91.3 60 75.0
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 4.5e-16 91.3 72 63.9
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 1.0e-15 90.1 60 75.0
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 2.9e-15 88.6 58 72.4
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 3.8e-15 88.2 140 37.1
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 8.0e-13 80.5 47 74.5
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 8.3e-10 70.5 54 68.5
Psat1g107320 Pisum sativum HOM05D001108 ORTHO05D001619 3.9e-07 61.6 115 29.6
Psat0s4854g0040 Pisum sativum HOM05D001108 ORTHO05D001619 5.6e-06 57.8 115 28.7


User provided reference genes

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