Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 1.6e-255 885.6 443 100.0
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 8.9e-230 800.0 436 90.8
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 1.2e-223 779.6 436 89.7
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 1.2e-221 773.1 429 91.1
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 7.1e-219 763.8 436 86.9
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 6.2e-215 750.7 429 85.8
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 1.3e-212 743.0 432 85.0
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 1.7e-212 742.7 438 83.8
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 4.9e-212 741.1 430 84.7
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 1.9e-211 739.2 433 85.9
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 1.9e-211 739.2 434 83.9
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 1.9e-211 739.2 442 83.0
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 7.1e-211 737.3 444 82.2
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 9.3e-211 736.9 428 83.4
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 1.6e-210 736.1 442 83.0
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 2.7e-210 735.3 425 86.1
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 6.0e-210 734.2 436 82.6
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 1.0e-209 733.4 440 82.5
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 1.0e-209 733.4 425 85.6
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 2.3e-209 732.3 430 83.7
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 2.3e-209 732.3 436 84.2
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 3.9e-209 731.5 426 84.0
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 5.1e-209 731.1 436 84.2
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 5.1e-209 731.1 436 84.2
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 1.9e-208 729.2 430 82.6
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 1.9e-208 729.2 439 83.4
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 4.3e-208 728.0 417 86.6
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 9.6e-208 726.9 433 82.9
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 9.6e-208 726.9 426 83.8
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 2.1e-207 725.7 436 81.7
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 2.8e-207 725.3 425 84.0
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 2.8e-207 725.3 439 82.2
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 4.8e-207 724.5 433 82.4
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 4.8e-207 724.5 436 82.3
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 1.4e-206 723.0 436 82.6
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 1.4e-206 723.0 428 83.4
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 3.1e-206 721.8 443 80.4
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 3.1e-206 721.8 426 83.8
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 6.9e-206 720.7 435 81.4
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 6.9e-206 720.7 448 79.7
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 6.9e-206 720.7 448 79.7
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 1.7e-204 716.1 436 81.0
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 2.2e-204 715.7 417 84.2
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 6.4e-204 714.1 444 80.4
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 1.1e-203 713.4 430 80.9
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 1.9e-203 712.6 472 75.8
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 2.4e-203 712.2 432 81.2
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 5.4e-203 711.1 436 80.0
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 9.3e-203 710.3 430 80.7
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 1.6e-202 709.5 430 80.5
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 2.1e-202 709.1 430 80.2
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 4.6e-202 708.0 430 81.2
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 6.0e-202 707.6 437 80.8
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 1.0e-201 706.8 430 81.2
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 1.3e-201 706.4 446 78.3
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 3.0e-201 705.3 431 80.3
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 3.9e-201 704.9 433 80.4
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 6.7e-201 704.1 434 80.2
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 8.7e-201 703.7 459 77.1
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 8.7e-201 703.7 436 79.6
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 8.7e-201 703.7 436 79.8
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 1.1e-200 703.4 435 80.5
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.9e-200 702.6 432 79.6
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 2.5e-200 702.2 440 79.3
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 2.5e-200 702.2 485 74.0
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 3.3e-200 701.8 428 80.1
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 9.6e-200 700.3 431 80.0
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 1.3e-199 699.9 439 78.1
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 4.8e-199 698.0 440 79.1
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 1.4e-198 696.4 427 82.0
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 2.4e-198 695.7 428 79.2
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 9.0e-198 693.7 441 78.7
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 1.5e-197 693.0 416 82.5
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 1.3e-196 689.9 421 80.3
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 2.9e-196 688.7 421 80.0
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 3.8e-196 688.3 442 77.6
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 1.1e-195 686.8 421 79.6
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 1.1e-195 686.8 421 79.6
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 3.2e-195 685.3 383 88.3
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 9.3e-195 683.7 432 78.7
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 1.8e-193 679.5 419 80.4
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 2.3e-193 679.1 509 69.7
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 8.7e-193 677.2 425 79.5
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 1.5e-192 676.4 398 85.2
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 1.3e-191 673.3 428 77.6
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 1.6e-191 672.9 450 74.9
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 6.2e-191 671.0 428 77.1
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 2.6e-189 665.6 440 76.8
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 4.5e-189 664.8 387 85.8
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 4.5e-189 664.8 432 76.9
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 4.5e-189 664.8 404 80.7
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 2.9e-188 662.1 444 75.7
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 2.9e-188 662.1 425 77.2
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 3.2e-187 658.7 396 82.8
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 3.0e-185 652.1 430 74.9
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 3.0e-185 652.1 430 74.9
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 9.7e-184 647.1 442 74.7
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 2.8e-183 645.6 396 81.1
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 1.0e-180 637.1 424 74.8
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 8.5e-180 634.0 420 78.3
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 1.6e-178 629.8 423 72.3
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 2.3e-177 625.9 424 72.9
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 2.0e-176 622.9 411 75.4
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 3.7e-175 618.6 495 65.1
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 2.5e-171 605.9 389 79.4
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 4.2e-171 605.1 382 80.4
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 9.4e-171 604.0 413 73.6
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 3.0e-169 599.0 361 82.0
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 3.3e-168 595.5 430 70.5
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 1.4e-166 590.1 424 73.1
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 7.7e-165 584.3 353 82.7
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 2.3e-161 572.8 426 66.4
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 3.0e-161 572.4 354 79.9
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 1.8e-158 563.1 357 78.2
Cc01_g10730 Coffea canephora HOM05D004460 ORTHO05D005254 3.1e-158 562.4 308 89.6
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 9.7e-152 540.8 388 71.4
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 6.8e-145 518.1 312 84.3
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 8.0e-138 494.6 340 72.4
Psat7g112240 Pisum sativum HOM05D004460 ORTHO05D005254 2.2e-135 486.5 291 82.8
CARHR150840 Cardamine hirsuta HOM05D004460 ORTHO05D005254 7.0e-134 481.5 285 83.5
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 7.8e-125 451.4 440 52.7
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 1.1e-118 431.0 446 50.9
Sabra16G0128800 Salix brachista HOM05D004460 ORTHO05D005254 8.6e-116 421.4 231 87.0
SEGI_40785 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 1.9e-115 420.2 269 77.7
Peaxi162Scf00073g01829 Petunia axillaris HOM05D004460 ORTHO05D005254 2.8e-114 416.4 232 87.9
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 3.1e-113 412.9 344 66.3
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 6.8e-113 411.8 466 48.1
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 2.6e-112 409.8 269 79.2
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 3.9e-108 396.0 289 69.9
VMungo0251G0290 Vigna mungo HOM05D004460 ORTHO05D005254 1.6e-106 390.6 228 81.1
arahy.Tifrunner.gnm1.ann1.TK1EDX Arachis hypogaea HOM05D004460 ORTHO05D005254 6.8e-105 385.2 248 78.2
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 2.6e-104 383.3 318 67.0
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 9.9e-104 381.3 415 50.1
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 9.9e-96 354.8 272 67.3
Lj4A675G47 Lonicera japonica HOM05D004460 ORTHO05D005254 1.1e-91 341.3 225 76.4
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 4.3e-91 339.3 461 43.6
Lj4A665T31 Lonicera japonica HOM05D004460 ORTHO05D005254 3.6e-90 336.3 196 82.1
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 4.9e-87 325.9 199 81.9
arahy.Tifrunner.gnm1.ann1.XS4KTC Arachis hypogaea HOM05D004460 ORTHO05D005254 1.3e-82 311.2 183 78.7
arahy.Tifrunner.gnm1.ann1.X9KU0H Arachis hypogaea HOM05D004460 ORTHO05D005254 3.8e-79 299.7 213 70.4
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 1.9e-75 287.3 208 69.2
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 2.2e-71 273.9 312 52.9
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 2.2e-66 257.3 172 74.4
MSTRG.17732 Avicennia marina HOM05D004460 ORTHO05D005254 1.3e-58 231.5 142 76.8
C02p00470 Brassica napus HOM05D004460 ORTHO05D005254 2.5e-46 190.7 207 52.7
HPP92_027906 Vanilla planifolia HOM05D004460 ORTHO05D005254 5.5e-46 189.5 217 55.3
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 3.0e-44 183.7 148 62.8
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 8.8e-44 182.2 127 70.1
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 2.6e-43 180.6 146 63.0
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 1.2e-40 171.8 126 68.3
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 6.3e-34 149.4 172 52.9
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 1.6e-29 134.8 80 76.2
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 1.6e-24 118.2 137 51.1
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 4.5e-24 116.7 85 62.4
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 8.0e-21 105.9 96 58.3
Medtr2g047140 Medicago truncatula HOM05D004460 ORTHO05D005254 8.0e-21 105.9 90 58.9
MD03G1005100 Malus domestica HOM05D004460 ORTHO05D005254 1.7e-18 98.2 57 77.2
Carub.0004s0823 Capsella rubella HOM05D004460 ORTHO05D005254 2.9e-18 97.4 75 69.3
SEGI_00213 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 4.9e-18 96.7 76 56.6
HPP92_024473 Vanilla planifolia HOM05D004460 ORTHO05D005254 3.0e-15 87.4 56 82.1
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 3.3e-14 84.0 42 88.1
AT1G73160 Arabidopsis thaliana HOM05D002124 ORTHO05D004058 1.2e-11 75.5 405 24.7
AL2G32910 Arabidopsis lyrata HOM05D002124 ORTHO05D004058 7.0e-09 66.2 310 24.8
Potri.009G038400 Populus trichocarpa HOM05D002124 ORTHO05D009549 1.9e-06 58.2 330 24.8
Sabra09G0027400 Salix brachista HOM05D002124 ORTHO05D009549 2.5e-06 57.8 331 25.4


User provided reference genes

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