Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 4156.7 2082 100.0
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 3035.4 2108 75.3
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2979.5 2118 74.4
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 2848.5 2089 71.5
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 2391.7 2100 61.6
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2264.2 2147 57.5
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2148.6 2103 56.3
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2124.0 2121 55.1
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2111.3 2114 54.8
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2093.5 2123 53.8
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2084.3 2098 54.7
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2079.3 2080 55.0
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2073.9 2137 54.0
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2072.4 2064 54.8
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2064.3 2218 52.5
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2054.6 2008 56.0
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2041.5 2036 54.6
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2027.7 2108 53.5
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2027.3 2168 52.2
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2021.9 2140 53.5
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2021.5 2055 53.8
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2021.1 2125 52.8
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2018.8 2109 53.1
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2017.3 2150 53.3
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2015.4 2214 51.1
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 1996.1 2130 52.2
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 1989.5 2129 52.8
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1973.0 2117 51.9
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 1970.7 2145 51.8
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 1969.5 2077 53.2
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1964.5 2111 51.8
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 1956.0 2108 51.3
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 1951.8 2091 51.6
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 1950.6 2139 51.7
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 1950.3 2109 51.2
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 1946.8 2109 51.0
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 1946.8 2121 51.2
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1946.0 2039 53.3
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 1945.6 2110 51.2
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1935.2 2108 51.2
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1927.1 2186 50.1
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1924.4 2108 50.6
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 1921.0 2107 51.0
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 1917.9 2063 51.3
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 1909.8 2156 50.0
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 1897.5 2129 50.4
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1896.7 2129 50.5
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1896.3 2200 49.0
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1893.2 2084 50.0
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 1884.0 2111 49.9
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1880.5 2114 50.2
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1880.1 2164 49.3
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1879.4 2133 50.2
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1878.6 2116 50.5
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1872.8 2072 51.4
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 1844.3 2101 50.3
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1842.4 2018 51.1
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1838.2 2094 49.8
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1834.7 2025 50.6
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1832.0 2168 48.6
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1826.6 1890 53.7
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1823.5 2087 49.9
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1819.7 2080 49.7
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1818.9 2030 50.2
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1818.5 2029 50.3
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1815.8 2032 50.4
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1815.0 2027 50.3
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1814.3 2032 50.1
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1808.9 2037 50.0
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1806.2 1970 51.4
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1803.1 2070 49.5
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1801.9 2026 50.5
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1796.9 2026 49.8
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1794.6 2054 49.8
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1776.1 2057 49.1
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1774.6 1889 52.6
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1759.2 2167 47.4
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1755.7 2028 49.1
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1749.2 1959 50.1
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1748.4 2010 49.3
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1602.8 2214 43.1
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1591.6 2064 46.9
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1493.4 1684 50.7
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1485.7 1621 51.1
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1381.7 1877 43.7
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1316.2 2043 40.7
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1306.2 1455 50.8
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1223.8 1210 55.6
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1122.8 2289 34.2
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1095.5 2268 33.6
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1082.0 2047 36.2
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 5.0e-291 1005.7 2219 32.9
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.3e-259 900.6 836 58.9
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 1.3e-225 788.5 711 58.5
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 9.4e-221 772.3 1159 40.3
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 3.0e-219 767.3 1472 36.0
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 4.8e-217 760.0 817 53.1
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.8e-203 714.9 827 50.1
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 1.4e-184 652.1 1348 33.8
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 9.5e-165 586.3 809 45.1
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 6.0e-159 567.0 856 42.4
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 2.9e-153 548.1 754 45.2
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 7.9e-119 433.7 427 52.7
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 7.1e-112 410.6 359 56.8
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 8.8e-78 297.4 194 75.8
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.3e-68 266.9 493 38.1
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 2.1e-63 249.6 261 52.9
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 4.7e-63 248.4 217 57.1
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 1.5e-61 243.4 268 47.4
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 1.3e-52 213.8 308 41.2
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 1.0e-49 204.1 262 45.0
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 7.8e-42 177.9 227 46.3
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 7.8e-34 151.4 264 39.4
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 4.7e-31 142.1 200 42.5
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 3.2e-27 129.4 78 78.2
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.0e-25 124.4 145 43.4
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 3.3e-24 119.4 139 47.5
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 2.1e-18 100.1 118 44.9
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 7.4e-16 91.7 68 63.2
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 2.1e-15 90.1 488 23.8
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 4.8e-15 89.0 57 73.7
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 6.9e-14 85.1 90 51.1
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 6.0e-10 72.0 41 78.0
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 1.0e-09 71.2 67 52.2
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 5.1e-09 68.9 87 40.2


User provided reference genes

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