Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 2.9e-194 681.8 361 100.0
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 4.9e-69 265.8 243 63.8
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 3.3e-57 226.5 284 52.1
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 4.3e-57 226.1 161 72.7
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 1.3e-50 204.5 249 51.8
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.5e-49 201.1 254 50.0
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.5e-49 201.1 253 52.6
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 3.7e-48 196.4 259 45.6
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 6.3e-48 195.7 255 46.7
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 3.1e-47 193.4 367 40.9
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 5.3e-47 192.6 242 50.0
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 3.4e-46 189.9 252 48.4
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 4.5e-46 189.5 252 49.2
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 7.7e-46 188.7 249 47.8
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.0e-45 188.3 252 50.8
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.3e-45 188.0 249 47.4
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.3e-45 188.0 260 50.0
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.7e-45 187.6 245 49.8
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 1.7e-45 187.6 251 51.4
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 1.7e-45 187.6 258 49.2
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 2.2e-45 187.2 250 48.4
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 2.9e-45 186.8 257 46.3
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 3.8e-45 186.4 257 47.5
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 6.5e-45 185.7 251 50.6
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.5e-44 183.7 171 56.7
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.5e-44 183.7 264 48.9
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 4.2e-44 183.0 249 45.8
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 4.2e-44 183.0 244 48.4
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 5.5e-44 182.6 252 42.9
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 7.2e-44 182.2 248 46.4
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 7.2e-44 182.2 252 42.9
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 9.4e-44 181.8 258 48.1
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 9.4e-44 181.8 253 45.5
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.6e-43 181.0 264 48.9
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.6e-43 181.0 257 45.1
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 2.1e-43 180.6 256 46.5
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 2.7e-43 180.3 254 46.9
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 4.6e-43 179.5 257 45.9
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.6e-43 179.5 256 48.8
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 4.6e-43 179.5 256 44.9
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 6.1e-43 179.1 257 40.9
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.0e-42 178.3 264 47.7
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.4e-42 177.9 257 41.6
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 1.8e-42 177.6 257 43.2
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 2.3e-42 177.2 242 40.5
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 8.8e-42 175.3 273 44.0
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 8.8e-42 175.3 254 43.3
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 1.1e-41 174.9 255 45.9
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 1.5e-41 174.5 261 45.2
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 2.0e-41 174.1 255 46.3
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 2.6e-41 173.7 252 42.1
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 2.6e-41 173.7 256 42.6
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 3.3e-41 173.3 255 47.5
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 4.4e-41 172.9 263 44.9
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 4.4e-41 172.9 258 43.4
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 4.4e-41 172.9 255 42.0
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 5.7e-41 172.6 256 46.1
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 7.4e-41 172.2 273 43.2
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 7.4e-41 172.2 252 42.1
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 9.7e-41 171.8 247 47.0
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 9.7e-41 171.8 247 47.0
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 1.3e-40 171.4 263 42.6
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 1.3e-40 171.4 248 45.6
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 1.3e-40 171.4 255 47.5
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 1.3e-40 171.4 169 55.0
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 1.7e-40 171.0 262 44.7
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 1.7e-40 171.0 253 44.7
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.7e-40 171.0 256 46.9
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 2.2e-40 170.6 263 43.7
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 2.2e-40 170.6 249 43.4
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 2.8e-40 170.2 262 44.7
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 2.8e-40 170.2 265 45.7
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 3.7e-40 169.9 254 45.3
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 3.7e-40 169.9 264 45.5
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 4.8e-40 169.5 261 42.1
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 4.8e-40 169.5 263 44.9
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 4.8e-40 169.5 256 45.3
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 4.8e-40 169.5 269 43.9
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 6.3e-40 169.1 265 42.3
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 6.3e-40 169.1 251 43.0
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 8.2e-40 168.7 273 44.7
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 8.2e-40 168.7 262 41.6
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 1.1e-39 168.3 260 43.8
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.4e-39 167.9 251 46.6
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 1.8e-39 167.5 177 59.3
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 3.1e-39 166.8 254 43.7
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 3.1e-39 166.8 262 44.3
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 4.1e-39 166.4 257 40.1
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 9.1e-39 165.2 255 45.9
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 1.2e-38 164.9 252 44.4
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 1.2e-38 164.9 220 45.9
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.5e-38 164.5 255 42.7
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.5e-38 164.5 252 44.4
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 2.6e-38 163.7 257 43.2
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 2.6e-38 163.7 251 44.2
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 4.5e-38 162.9 281 40.2
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 4.5e-38 162.9 238 42.0
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 5.9e-38 162.5 254 39.0
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 1.7e-37 161.0 186 51.1
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 2.2e-37 160.6 249 42.2
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 6.5e-37 159.1 244 43.9
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 8.5e-37 158.7 159 54.1
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.1e-36 158.3 255 40.8
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 1.9e-36 157.5 255 40.8
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.7e-35 152.9 256 41.8
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 7.9e-35 152.1 259 43.6
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 1.8e-34 151.0 167 49.1
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 2.3e-34 150.6 261 43.7
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 2.3e-34 150.6 180 50.6
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 3.0e-34 150.2 322 36.3
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.9e-34 149.8 225 40.9
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 3.9e-34 149.8 266 40.2
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 1.1e-33 148.3 244 39.8
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 5.7e-33 146.0 161 50.3
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 2.8e-32 143.7 163 50.3
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 4.8e-32 142.9 262 39.7
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 6.3e-32 142.5 241 40.2
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 1.1e-31 141.7 249 43.0
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 1.4e-31 141.4 252 43.7
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 5.3e-31 139.4 224 40.6
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 7.0e-31 139.0 264 42.0
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 2.6e-30 137.1 247 39.3
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 2.2e-29 134.0 264 36.7
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 8.5e-29 132.1 146 50.7
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.6e-27 127.9 363 33.1
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 1.0e-26 125.2 150 49.3
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 9.7e-25 118.6 132 49.2
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 2.2e-21 107.5 208 33.2
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 3.8e-21 106.7 219 36.1
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 8.0e-19 99.0 147 44.2
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.3e-18 97.4 251 34.3
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 6.8e-18 95.9 155 43.9
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 1.5e-17 94.7 215 35.3
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 2.2e-16 90.9 251 35.9
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 2.2e-16 90.9 147 36.1
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.1e-15 88.6 57 68.4
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 1.4e-15 88.2 198 33.3
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 9.1e-15 85.5 142 37.3
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 4.5e-14 83.2 171 37.4
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.0e-13 82.0 134 45.5
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 2.5e-12 77.4 163 39.9
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 2.0e-09 67.8 135 41.5
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 2.2e-08 64.3 134 38.1
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 6.3e-08 62.8 41 65.9


User provided reference genes

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