Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 1.2e-242 842.8 426 100.0
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.2e-167 593.6 416 71.9
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.3e-165 585.5 402 73.4
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.3e-165 585.5 402 73.4
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 2.5e-144 516.2 408 65.9
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 2.0e-141 506.5 413 64.2
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 5.0e-121 438.7 416 55.5
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 3.5e-82 309.7 413 42.4
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 7.8e-82 308.5 399 42.9
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 7.3e-80 302.0 398 44.2
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 1.4e-78 297.7 393 43.0
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.0e-77 293.9 393 41.0
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 7.1e-75 285.4 400 39.8
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.5e-74 283.1 410 42.0
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.0e-73 280.0 389 41.6
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 3.0e-73 280.0 396 39.4
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 5.1e-73 279.3 403 40.0
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.1e-73 279.3 389 41.4
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 5.1e-73 279.3 389 41.4
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.1e-72 278.1 393 41.0
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.9e-72 277.3 409 41.3
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 1.9e-72 277.3 408 39.7
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.3e-71 274.6 389 39.8
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.1e-70 271.6 401 39.2
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 1.4e-70 271.2 394 40.6
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 1.8e-70 270.8 409 39.4
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 1.8e-70 270.8 399 42.6
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 5.3e-70 269.2 401 38.9
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 1.2e-69 268.1 400 42.5
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 2.0e-69 267.3 408 36.0
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.0e-69 267.3 391 41.4
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 4.5e-69 266.2 398 38.4
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 3.8e-68 263.1 414 37.0
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 6.4e-68 262.3 422 38.4
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.9e-67 260.8 414 37.4
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 4.2e-67 259.6 390 37.7
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 5.4e-67 259.2 389 38.0
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 1.2e-66 258.1 397 38.3
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.3e-65 254.6 392 37.5
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 6.7e-65 252.3 422 37.7
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 8.7e-65 251.9 392 37.0
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 1.5e-64 251.1 393 38.7
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 3.3e-64 250.0 429 36.1
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 9.6e-64 248.4 403 36.7
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 1.3e-63 248.1 404 35.6
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 8.1e-63 245.4 427 36.5
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 1.1e-62 245.0 401 37.7
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.4e-62 244.6 398 36.7
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.4e-62 244.6 398 36.9
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 9.0e-62 241.9 398 37.4
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 9.0e-62 241.9 410 35.4
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 2.6e-61 240.4 393 36.9
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 7.6e-61 238.8 394 35.8
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 1.0e-60 238.4 403 37.5
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 2.2e-60 237.3 408 35.3
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 8.4e-60 235.3 353 38.0
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 4.2e-59 233.0 419 35.3
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 9.3e-59 231.9 410 35.4
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 3.5e-58 229.9 397 35.8
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 4.6e-58 229.6 426 34.0
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.0e-57 228.4 410 35.6
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 1.3e-57 228.0 432 34.0
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 1.8e-57 227.6 254 46.5
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 2.3e-57 227.3 393 36.4
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 5.1e-57 226.1 393 36.1
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 8.7e-57 225.3 392 35.2
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.9e-56 224.2 413 36.6
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 5.7e-56 222.6 395 34.2
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.3e-55 221.5 410 33.9
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 1.6e-55 221.1 408 35.0
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.6e-55 221.1 410 35.1
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 2.1e-55 220.7 398 34.7
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 4.8e-55 219.5 398 33.4
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 8.2e-55 218.8 413 35.6
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 8.2e-55 218.8 408 35.8
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.1e-54 218.4 415 36.6
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.1e-54 218.4 415 36.6
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 4.0e-54 216.5 406 34.5
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 4.0e-54 216.5 460 32.2
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 6.9e-54 215.7 419 36.3
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 6.9e-54 215.7 407 34.4
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 1.2e-53 214.9 408 35.8
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 1.5e-53 214.5 413 33.9
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 2.0e-53 214.2 376 37.0
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 4.5e-53 213.0 409 34.5
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 2.9e-52 210.3 396 35.9
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.4e-51 208.0 404 31.4
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 9.3e-51 205.3 401 31.9
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.1e-50 204.1 408 33.1
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 2.1e-50 204.1 398 32.7
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.1e-50 204.1 332 37.7
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 2.7e-50 203.8 406 33.3
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 1.0e-49 201.8 404 33.4
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.3e-49 201.4 358 34.6
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 1.1e-48 198.4 393 32.6
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 4.3e-48 196.4 413 32.7
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 4.3e-48 196.4 414 31.9
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.3e-48 196.4 396 30.8
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 5.7e-48 196.1 404 32.7
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 7.4e-48 195.7 409 33.3
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 2.8e-47 193.7 392 31.9
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 6.3e-47 192.6 407 31.0
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 6.3e-47 192.6 406 32.3
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 1.4e-46 191.4 403 31.5
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 1.8e-46 191.0 420 31.9
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 2.4e-46 190.7 398 31.7
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.1e-46 190.3 390 31.5
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 3.1e-46 190.3 392 30.4
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 4.1e-46 189.9 381 34.1
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 9.0e-46 188.7 402 31.3
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 9.0e-46 188.7 392 30.6
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 7.7e-45 185.7 408 30.9
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.3e-44 184.9 380 33.9
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.7e-44 184.5 395 31.4
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 2.2e-44 184.1 402 31.1
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 3.8e-44 183.3 400 31.2
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 4.2e-43 179.9 397 32.0
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 9.4e-43 178.7 391 32.2
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 1.2e-42 178.3 405 30.6
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.6e-42 176.8 400 30.5
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.3e-41 174.1 396 30.1
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 3.0e-41 173.7 403 31.0
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.5e-40 170.6 394 29.4
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 3.3e-40 170.2 405 28.9
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 4.3e-40 169.9 393 29.8
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 9.7e-40 168.7 405 28.6
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 1.3e-39 168.3 421 32.1
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 2.8e-39 167.2 396 28.0
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 6.3e-39 166.0 422 32.7
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.1e-38 165.2 381 30.4
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 6.9e-38 162.5 425 31.8
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 9.1e-38 162.2 422 32.9
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 9.1e-38 162.2 350 30.3
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 2.0e-37 161.0 423 31.0
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 6.5e-36 156.0 318 33.3
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 8.5e-36 155.6 397 30.5
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 1.1e-35 155.2 401 30.9
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.2e-35 153.3 251 35.9
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 7.2e-35 152.5 358 30.4
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 9.4e-35 152.1 293 34.8
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 3.6e-34 150.2 293 34.5
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 2.3e-33 147.5 293 36.2
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 2.0e-32 144.4 257 33.5
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 2.4e-30 137.5 381 30.4
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 2.0e-29 134.4 278 33.5
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.6e-29 134.0 271 32.5
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 2.9e-28 130.6 392 25.5
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 4.2e-27 126.7 310 28.4
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 4.2e-27 126.7 119 52.9
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 1.6e-26 124.8 396 27.5
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.4e-22 111.7 234 32.9
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.1e-22 110.5 244 30.7
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.2e-18 98.6 277 28.9
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 6.8e-17 92.8 424 27.1
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 4.8e-15 86.7 167 33.5
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.8e-14 84.7 127 35.4
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 4.1e-14 83.6 122 38.5
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 4.1e-14 83.6 208 27.4
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.7e-13 80.9 103 40.8
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.7e-12 78.2 121 38.8
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 2.9e-12 77.4 208 26.9
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 1.1e-11 75.5 127 33.9
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 1.5e-11 75.1 110 38.2
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 4.2e-11 73.6 104 35.6
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 7.2e-11 72.8 101 37.6
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 2.7e-10 70.9 167 31.1
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.4e-09 68.6 108 37.0
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 3.0e-09 67.4 99 34.3
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 4.0e-09 67.0 89 40.4
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 9.8e-08 62.4 253 25.3


User provided reference genes

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