Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03892 Beta vulgaris HOM05D020966 ORTHO05D023391 0.0e+00 2175.6 1084 100.0
AUR62022070 Chenopodium quinoa HOM05D020966 ORTHO05D023391 0.0e+00 1621.7 1119 75.1
AUR62009156 Chenopodium quinoa HOM05D020966 ORTHO05D023391 0.0e+00 1603.6 1120 74.0
Ah.11g044760 Amaranthus hybridus HOM05D020966 ORTHO05D023391 0.0e+00 1374.4 1111 64.8
Sabra13G0012400 Salix brachista HOM05D020966 ORTHO05D010251 5.9e-33 147.5 502 25.5
RcHm_v2.0_Chr5g0049171 Rosa chinensis HOM05D016656 ORTHO05D003639 5.5e-31 141.0 532 25.4
FvH4_3g26742 Fragaria vesca HOM05D016656 ORTHO05D003639 8.2e-27 127.1 388 27.3
QL01p013702 Quercus lobata HOM05D009149 ORTHO05D003639 1.1e-23 116.7 476 25.6
Solyc05g010817.1 Solanum lycopersicum HOM05D008778 ORTHO05D003639 4.7e-22 111.3 596 23.8
Peaxi162Scf00820g00119 Petunia axillaris HOM05D008778 ORTHO05D003639 3.0e-21 108.6 571 23.1
Nitab4.5_0001698g0060 Nicotiana tabacum HOM05D008778 ORTHO05D003639 3.3e-20 105.1 508 23.6
Cc00_g19240 Coffea canephora HOM05D009149 ORTHO05D003639 1.7e-19 102.8 552 21.7
Sopen00g007290 Solanum pennellii HOM05D008778 ORTHO05D003639 2.8e-19 102.1 755 22.9
Sopen00g002430 Solanum pennellii HOM05D008778 ORTHO05D003639 3.7e-19 101.7 755 22.9
Peaxi162Scf00820g00117 Petunia axillaris HOM05D008778 ORTHO05D003639 5.9e-17 94.4 519 22.7
Sc03g0005210 Simmondsia chinensis HOM05D007912 ORTHO05D010251 5.9e-17 94.4 276 26.4
RcHm_v2.0_Chr2g0116581 Rosa chinensis HOM05D008702 ORTHO05D003639 1.3e-16 93.2 469 24.7
PGSC0003DMG400002681 Solanum tuberosum HOM05D008778 ORTHO05D003639 3.8e-16 91.7 615 23.7
Sopen09g003880 Solanum pennellii HOM05D008778 ORTHO05D003639 6.5e-16 90.9 447 25.5
RcHm_v2.0_Chr2g0142701 Rosa chinensis HOM05D008702 ORTHO05D003639 1.9e-15 89.4 466 24.2
Nitab4.5_0000663g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 2.5e-15 89.0 709 21.7
RcHm_v2.0_Chr7g0194611 Rosa chinensis HOM05D009149 ORTHO05D003639 3.2e-15 88.6 475 24.4
RcHm_v2.0_Chr2g0138191 Rosa chinensis HOM05D008702 ORTHO05D003639 4.2e-15 88.2 471 25.1
Nitab4.5_0001698g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 5.5e-15 87.8 540 22.4
RcHm_v2.0_Chr2g0152981 Rosa chinensis HOM05D008702 ORTHO05D003639 1.2e-14 86.7 466 24.5
EL10Ac9g22437 Beta vulgaris HOM05D020966 ORTHO05D023391 2.7e-14 85.5 169 33.1
RcHm_v2.0_Chr2g0121071 Rosa chinensis HOM05D008702 ORTHO05D003639 3.0e-13 82.0 469 24.3
RcHm_v2.0_Chr5g0004321 Rosa chinensis HOM05D008702 ORTHO05D003639 5.7e-12 77.8 307 26.7
Sc05g0003960 Simmondsia chinensis HOM05D007912 ORTHO05D010251 7.5e-12 77.4 250 29.6
CSS0044889 Camellia sinensis var. sinensis HOM05D008778 ORTHO05D003639 9.8e-12 77.0 489 24.1
Aqoxy7G03260 Aquilegia oxysepala HOM05D001371 ORTHO05D001319 1.3e-11 76.6 453 25.4
Sc17g0003520 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.3e-11 76.6 89 43.8
Nitab4.5_0001698g0040 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.7e-11 76.3 489 23.9
CSS0041949 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 1.1e-10 73.6 278 28.1
RcHm_v2.0_Chr4g0410321 Rosa chinensis HOM05D009149 ORTHO05D003639 1.1e-10 73.6 407 24.1
RcHm_v2.0_Chr1g0321631 Rosa chinensis HOM05D008702 ORTHO05D003639 1.2e-09 70.1 279 25.4
Sc02g0004890 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.6e-09 69.7 147 36.7
Sc11g0004150 Simmondsia chinensis HOM05D007912 ORTHO05D010251 2.7e-09 68.9 85 45.9
Sc07g0004510 Simmondsia chinensis HOM05D007912 ORTHO05D010251 7.7e-09 67.4 95 42.1
Oeu026044.1 Olea europaea HOM05D007843 ORTHO05D003639 1.3e-08 66.6 320 25.6
Sc05g0005050 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.3e-08 66.6 89 44.9
Sc18g0005300 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.3e-08 66.6 265 28.3
Sc24g0001190 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.7e-08 66.2 85 42.4
Oeu019035.1 Olea europaea HOM05D007843 ORTHO05D003639 2.2e-08 65.9 312 25.3
Sc08g0005440 Simmondsia chinensis HOM05D007912 ORTHO05D010251 2.2e-08 65.9 103 38.8
C06p06700 Brassica napus HOM05D001371 ORTHO05D001319 2.9e-08 65.5 398 21.1
FAN25G0588 Fragaria x ananassa HOM05D016656 ORTHO05D003639 2.9e-08 65.5 261 25.7
RcHm_v2.0_Chr1g0320431 Rosa chinensis HOM05D008702 ORTHO05D003639 2.9e-08 65.5 240 26.7
Peaxi162Scf00820g00045 Petunia axillaris HOM05D008778 ORTHO05D003639 3.8e-08 65.1 370 22.4
Sc07g0004870 Simmondsia chinensis HOM05D007912 ORTHO05D010251 3.8e-08 65.1 93 39.8
BcaC01g01280 Brassica carinata HOM05D001371 ORTHO05D001319 5.0e-08 64.7 381 24.4
C03p90170 Brassica napus HOM05D001371 ORTHO05D001319 5.0e-08 64.7 381 24.4
BolC3t21339H Brassica oleracea HOM05D001371 ORTHO05D001319 5.0e-08 64.7 381 24.4
Sc02g0004480 Simmondsia chinensis HOM05D007912 ORTHO05D010251 5.0e-08 64.7 162 29.6
Sc02g0004970 Simmondsia chinensis HOM05D007912 ORTHO05D010251 5.0e-08 64.7 98 36.7
BcaB07g33606 Brassica carinata HOM05D001371 ORTHO05D001319 8.5e-08 63.9 395 23.0
Sc13g0008210 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.1e-07 63.5 93 36.6
Rhsim06G0217900 Rhododendron simsii HOM05D001371 ORTHO05D001319 1.5e-07 63.2 269 27.1
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 1.9e-07 62.8 277 25.6
Duzib213G0305 Durio zibethinus HOM05D001371 ORTHO05D001319 4.2e-07 61.6 231 27.7
Nitab4.5_0000663g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 4.2e-07 61.6 1015 20.0
Sc06g0004250 Simmondsia chinensis HOM05D007912 ORTHO05D010251 4.2e-07 61.6 73 45.2
C06p06680 Brassica napus HOM05D001371 ORTHO05D001319 5.5e-07 61.2 412 20.9
A06p02440 Brassica napus HOM05D001371 ORTHO05D001319 7.2e-07 60.8 382 21.7
Sc14g0002490 Simmondsia chinensis HOM05D007912 ORTHO05D010251 9.4e-07 60.5 92 38.0
BcaC08g43256 Brassica carinata HOM05D001371 ORTHO05D001319 1.6e-06 59.7 260 26.2
C06p06020 Brassica napus HOM05D001371 ORTHO05D001319 1.6e-06 59.7 260 26.2
BolC6t35715H Brassica oleracea HOM05D001371 ORTHO05D001319 1.6e-06 59.7 260 26.2
Sc05g0004290 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.6e-06 59.7 183 27.3
Sc01g0006390 Simmondsia chinensis HOM05D007912 ORTHO05D010251 2.1e-06 59.3 60 46.7
Sc22g0004320 Simmondsia chinensis HOM05D007912 ORTHO05D010251 2.1e-06 59.3 72 44.4
COL.COLO4_09640 Corchorus olitorius HOM05D001371 ORTHO05D001319 2.7e-06 58.9 246 24.4
RcHm_v2.0_Chr1g0320711 Rosa chinensis HOM05D008702 ORTHO05D003639 2.7e-06 58.9 195 25.1
Sc04g0004840 Simmondsia chinensis HOM05D007912 ORTHO05D010251 3.6e-06 58.5 110 33.6
Eucgr.F03451 Eucalyptus grandis HOM05D001371 ORTHO05D001319 4.7e-06 58.2 207 26.6
Rhsim06G0215500 Rhododendron simsii HOM05D001371 ORTHO05D001319 6.1e-06 57.8 238 26.5
Sc02g0005760 Simmondsia chinensis HOM05D007912 ORTHO05D010251 6.1e-06 57.8 140 32.9
Sopen07g032600 Solanum pennellii HOM05D001371 ORTHO05D001319 6.1e-06 57.8 233 25.8
Sc02g0004810 Simmondsia chinensis HOM05D007912 ORTHO05D010251 8.0e-06 57.4 60 45.0
Sc05g0005690 Simmondsia chinensis HOM05D007912 ORTHO05D010251 8.0e-06 57.4 73 42.5


User provided reference genes

Program Settings