Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03889 Beta vulgaris HOM05D004340 ORTHO05D014919 2.2e-70 268.9 134 100.0
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 8.9e-32 140.6 103 68.9
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 2.9e-30 135.6 88 73.9
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 2.4e-29 132.5 86 70.9
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 1.2e-28 130.2 86 72.1
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 1.4e-24 116.7 86 65.1
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 2.5e-18 95.9 91 54.9
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 4.3e-18 95.1 91 52.7
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 1.2e-17 93.6 91 54.9
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 3.6e-17 92.0 92 51.1
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 3.6e-17 92.0 93 51.6
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 6.2e-17 91.3 91 49.5
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 8.1e-17 90.9 93 51.6
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 8.1e-17 90.9 91 49.5
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 1.4e-16 90.1 93 51.6
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 1.4e-16 90.1 93 51.6
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 1.4e-16 90.1 89 51.7
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 1.8e-16 89.7 93 52.7
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 2.3e-16 89.4 84 54.8
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 4.0e-16 88.6 95 50.5
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 4.0e-16 88.6 91 52.7
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 8.9e-16 87.4 89 50.6
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 8.9e-16 87.4 93 51.6
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 2.0e-15 86.3 95 48.4
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 2.6e-15 85.9 84 52.4
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 2.6e-15 85.9 84 52.4
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 3.4e-15 85.5 84 52.4
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 3.4e-15 85.5 89 49.4
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 4.4e-15 85.1 89 49.4
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 4.4e-15 85.1 93 50.5
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 4.4e-15 85.1 93 48.4
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 9.9e-15 84.0 91 48.4
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 9.9e-15 84.0 121 40.5
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 9.9e-15 84.0 84 51.2
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 1.3e-14 83.6 88 47.7
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 1.7e-14 83.2 85 51.8
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 2.2e-14 82.8 84 51.2
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 2.9e-14 82.4 91 48.4
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 3.7e-14 82.0 91 47.3
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 3.7e-14 82.0 88 45.5
TPR.G26189 Trifolium pratense HOM05D004340 ORTHO05D006363 3.7e-14 82.0 89 48.3
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 6.4e-14 81.3 88 45.5
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 6.4e-14 81.3 92 45.7
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 8.4e-14 80.9 89 47.2
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 8.4e-14 80.9 84 48.8
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 8.4e-14 80.9 88 47.7
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 8.4e-14 80.9 89 49.4
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 8.4e-14 80.9 91 47.3
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 1.4e-13 80.1 88 47.7
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 1.4e-13 80.1 88 48.9
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 1.4e-13 80.1 86 47.7
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 1.9e-13 79.7 84 50.0
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 1.9e-13 79.7 91 48.4
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 3.2e-13 79.0 110 40.0
Rhsim10G0051900 Rhododendron simsii HOM05D004340 ORTHO05D006363 5.4e-13 78.2 98 41.8
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 5.4e-13 78.2 86 52.3
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 7.1e-13 77.8 88 45.5
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 9.2e-13 77.4 84 48.8
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 1.2e-12 77.0 84 48.8
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 1.2e-12 77.0 84 47.6
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 1.2e-12 77.0 86 47.7
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 1.6e-12 76.6 88 45.5
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 1.6e-12 76.6 88 42.0
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 1.6e-12 76.6 88 44.3
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 1.6e-12 76.6 88 44.3
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 1.6e-12 76.6 123 42.3
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 2.1e-12 76.3 91 44.0
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 2.1e-12 76.3 86 45.3
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 2.1e-12 76.3 105 40.0
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 6.0e-12 74.7 88 44.3
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 6.0e-12 74.7 105 40.0
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 7.8e-12 74.3 96 42.7
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 1.0e-11 73.9 79 50.6
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 1.0e-11 73.9 79 51.9
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 1.3e-11 73.6 88 43.2
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 1.3e-11 73.6 88 44.3
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.3e-11 73.6 91 44.0
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 3.0e-11 72.4 121 38.0
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 3.0e-11 72.4 106 37.7
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 3.9e-11 72.0 91 44.0
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 3.9e-11 72.0 88 43.2
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 3.9e-11 72.0 102 41.2
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 3.9e-11 72.0 106 37.7
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 6.6e-11 71.2 96 44.8
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 6.6e-11 71.2 90 44.4
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 6.6e-11 71.2 97 43.3
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 8.6e-11 70.9 89 42.7
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 8.6e-11 70.9 105 37.1
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 1.1e-10 70.5 89 40.4
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 2.5e-10 69.3 98 44.9
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 2.5e-10 69.3 101 41.6
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 2.5e-10 69.3 101 39.6
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 3.3e-10 68.9 118 33.9
vmacro05169 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 3.3e-10 68.9 96 40.6
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 4.3e-10 68.6 97 40.2
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 5.6e-10 68.2 134 33.6
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 4.7e-09 65.1 81 44.4
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 4.7e-09 65.1 81 44.4
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 6.2e-09 64.7 84 40.5
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 8.1e-09 64.3 81 44.4
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 2.4e-08 62.8 81 43.2
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 3.1e-08 62.4 107 35.5
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 1.5e-07 60.1 39 64.1
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 1.5e-07 60.1 107 33.6
MBI05_g36411_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D014919 2.6e-07 59.3 59 50.8
Cpa.g.sc1.51 Carica papaya HOM05D004340 ORTHO05D014919 9.9e-07 57.4 39 61.5
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 9.9e-07 57.4 88 37.5
HPP92_022007 Vanilla planifolia HOM05D004340 ORTHO05D006363 1.3e-06 57.0 88 36.4


User provided reference genes

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