Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 0.0e+00 2292.7 1181 100.0
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 0.0e+00 1824.3 1186 79.8
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 0.0e+00 1807.7 1186 79.6
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 0.0e+00 1463.4 1184 67.1
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1271.1 1135 59.7
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 0.0e+00 1228.0 1190 56.6
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 0.0e+00 1169.8 1208 54.4
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 0.0e+00 1152.5 1189 53.0
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 0.0e+00 1145.6 1187 53.2
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 0.0e+00 1145.2 1205 52.8
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 0.0e+00 1142.9 1196 53.0
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 0.0e+00 1139.0 1198 52.9
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 0.0e+00 1135.6 1186 53.8
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 0.0e+00 1120.9 1209 51.9
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1114.4 1207 51.1
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 0.0e+00 1114.4 1202 51.7
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 0.0e+00 1114.0 1210 52.4
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1105.5 1205 52.0
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 0.0e+00 1099.3 1188 52.2
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 0.0e+00 1094.3 1188 52.0
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1093.6 1191 51.4
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1091.6 1186 51.6
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 0.0e+00 1085.1 1208 51.6
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 0.0e+00 1082.0 1188 51.3
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.6e-310 1069.7 1188 50.8
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 3.6e-310 1068.5 1208 50.7
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 2.0e-308 1062.8 1139 53.4
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 8.3e-307 1057.4 1188 51.2
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 1.8e-306 1056.2 1195 50.4
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 7.0e-306 1054.3 1203 49.7
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 7.0e-306 1054.3 1207 50.1
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 8.5e-304 1047.3 1188 50.4
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 3.2e-303 1045.4 1206 48.8
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 1.3e-299 1033.5 1194 48.9
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 2.9e-296 1022.3 1204 48.5
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 6.6e-296 1021.1 1199 49.3
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 1.7e-291 1006.5 1184 49.6
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 4.9e-291 1005.0 1200 49.1
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 6.4e-291 1004.6 1140 51.0
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 2.3e-288 996.1 1185 48.4
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 5.0e-288 995.0 1186 47.5
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 2.5e-287 992.6 1192 48.4
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 3.6e-286 988.8 1336 45.1
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 7.5e-284 981.1 1188 47.8
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 6.4e-283 978.0 1186 48.0
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 5.8e-276 954.9 1182 47.6
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 4.9e-275 951.8 1330 44.3
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 4.9e-275 951.8 1228 46.4
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 4.1e-274 948.7 1179 46.6
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 1.2e-273 947.2 1210 46.6
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 6.0e-273 944.9 1192 46.1
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 2.5e-271 939.5 1147 48.7
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 5.6e-271 938.3 1094 49.4
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 1.6e-270 936.8 1187 46.8
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 1.6e-270 936.8 1187 46.8
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 2.8e-270 936.0 1193 46.9
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 4.7e-270 935.3 1094 49.2
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 1.8e-269 933.3 1094 48.8
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 8.9e-269 931.0 1191 46.1
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 2.6e-268 929.5 1186 47.2
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 9.9e-268 927.5 1190 47.1
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 6.4e-267 924.9 1094 48.8
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 6.0e-265 918.3 1211 44.8
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 1.2e-262 910.6 1333 43.2
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 2.1e-262 909.8 1024 49.2
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 4.7e-262 908.7 1042 49.8
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.5e-255 886.3 1148 47.1
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 3.6e-246 855.9 858 56.5
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 8.1e-246 854.7 1097 46.8
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 5.1e-240 835.5 1208 42.5
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 3.4e-236 822.8 1149 44.5
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 2.2e-235 820.1 1090 45.1
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 1.9e-234 817.0 1202 42.3
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 1.0e-224 784.6 1183 42.3
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 1.6e-222 777.3 833 51.4
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 8.5e-211 738.4 893 49.5
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 2.4e-205 720.3 1244 39.0
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 7.5e-199 698.7 876 47.0
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 1.4e-189 667.9 847 46.8
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 2.4e-189 667.2 992 43.4
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 8.0e-185 652.1 942 43.0
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 1.6e-172 611.3 649 52.1
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 1.5e-170 604.7 954 39.3
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 2.8e-169 600.5 1159 34.6
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 1.2e-159 568.5 590 52.7
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 1.7e-155 554.7 1177 33.6
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.8e-144 518.1 753 41.6
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 2.6e-143 514.2 680 44.7
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 1.4e-141 508.4 563 49.6
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 1.7e-139 501.5 504 54.8
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 1.3e-131 475.3 580 49.0
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 6.2e-129 466.5 604 46.5
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.4e-120 438.7 494 51.4
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 4.0e-120 437.2 598 43.6
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 4.0e-120 437.2 582 43.8
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 5.1e-115 420.2 535 46.2
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 2.5e-114 417.9 1174 29.5
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 8.5e-102 376.3 498 45.0
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 2.0e-87 328.6 835 30.9
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.7e-81 308.9 376 47.3
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 2.0e-74 285.4 258 59.7
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 5.7e-74 283.9 570 40.2
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 1.6e-71 275.8 457 38.5
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 4.0e-67 261.2 417 39.6
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 1.5e-61 242.7 972 26.7
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.2e-57 228.8 175 68.0
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 9.5e-53 213.4 253 48.6
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 6.8e-51 207.2 267 43.8
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 4.1e-48 198.0 168 61.9
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 5.1e-46 191.0 165 61.8
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 2.8e-44 185.3 357 34.2
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 1.9e-40 172.6 253 41.1
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 1.7e-38 166.0 1154 22.6
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 3.6e-36 158.3 251 38.2
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.0e-35 154.8 230 43.9
Ah.10g034360 Amaranthus hybridus HOM05D000087 ORTHO05D005735 2.0e-34 152.5 97 77.3
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.3e-33 149.8 240 41.7
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.1e-31 142.5 123 56.9
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 4.7e-28 131.3 130 53.1
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 6.2e-28 131.0 173 45.7
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 2.0e-26 125.9 254 32.3
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 1.6e-23 116.3 121 53.7
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 6.6e-22 110.9 140 48.6
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.4e-19 102.4 98 55.1
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 8.4e-17 94.0 94 55.3
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 1.4e-16 93.2 120 42.5
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 5.4e-16 91.3 71 67.6
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.6e-15 89.7 67 64.2
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 4.6e-15 88.2 89 49.4
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.3e-14 86.7 86 54.7
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 3.0e-14 85.5 105 46.7
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 8.7e-14 84.0 100 44.0
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 1.5e-13 83.2 97 49.5
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 7.4e-13 80.9 121 42.1
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 1.3e-12 80.1 121 45.5
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 6.2e-12 77.8 59 62.7
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.1e-11 75.5 61 62.3
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 5.3e-11 74.7 109 37.6
MBI04_g07085_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.0e-10 72.8 93 45.2
EL10Ac2g04007 Beta vulgaris HOM05D000087 ORTHO05D088565 4.5e-10 71.6 86 54.7
MBI04_g39794_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 5.8e-10 71.2 93 45.2
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 7.6e-10 70.9 89 43.8
CARHR293850 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.2e-08 65.1 78 46.2
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 9.3e-08 63.9 76 47.4
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 9.3e-08 63.9 64 54.7
MBI04_g04803_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 4.6e-07 61.6 62 53.2
CARHR291380 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.3e-06 60.1 64 50.0


User provided reference genes

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