Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03879 Beta vulgaris HOM05D002237 ORTHO05D002213 2.1e-123 446.0 280 100.0
CANSAT25G0876 Cannabis sativa HOM05D002237 ORTHO05D002213 2.1e-30 137.1 321 36.4
Gorai.010G100300 Gossypium raimondii HOM05D002237 ORTHO05D002213 6.6e-29 132.1 316 33.5
Gohir.A06G087500 Gossypium hirsutum HOM05D002237 ORTHO05D002213 8.6e-29 131.7 313 32.9
Gohir.D06G086900 Gossypium hirsutum HOM05D002237 ORTHO05D002213 1.5e-28 131.0 313 33.5
Cpa.g.sc7.182 Carica papaya HOM05D002237 ORTHO05D002213 3.3e-28 129.8 338 34.6
Hma1.2p1_0482F.1_g162400 Hydrangea macrophylla HOM05D002237 ORTHO05D002213 9.5e-28 128.3 310 39.4
MD15G1059100 Malus domestica HOM05D002237 ORTHO05D002213 1.6e-27 127.5 335 32.8
Dinv22895 Davidia involucrata HOM05D002237 ORTHO05D002213 2.8e-27 126.7 311 38.9
SalBow4G0805 Salvia bowleyana HOM05D002237 ORTHO05D002213 1.4e-26 124.4 304 36.2
DCAR_000797 Daucus carota HOM05D002237 ORTHO05D002213 5.2e-26 122.5 301 35.2
Prupe.1G411600 Prunus persica HOM05D002237 ORTHO05D002213 2.0e-25 120.6 326 36.8
TWI63G0889 Tripterygium wilfordii HOM05D002237 ORTHO05D002213 2.0e-25 120.6 324 39.5
Dinv27989 Davidia involucrata HOM05D002237 ORTHO05D002213 4.4e-25 119.4 302 39.7
Sc09g0009840 Simmondsia chinensis HOM05D002237 ORTHO05D002213 4.4e-25 119.4 272 36.8
Manes.16G080900 Manihot esculenta HOM05D002237 ORTHO05D002213 5.8e-25 119.0 323 35.0
CARHR114840 Cardamine hirsuta HOM05D002237 ORTHO05D002213 7.6e-25 118.6 297 35.0
Nn8g38853 Nelumbo nucifera HOM05D002237 ORTHO05D002213 7.6e-25 118.6 275 41.1
TWI34G0810 Tripterygium wilfordii HOM05D002237 ORTHO05D002213 1.3e-24 117.9 315 39.4
FAN20G2042 Fragaria x ananassa HOM05D002237 ORTHO05D002213 1.7e-24 117.5 342 32.5
Actinidia26073 Actinidia chinensis HOM05D002237 ORTHO05D002213 2.9e-24 116.7 294 35.0
THA.LOC104803728 Tarenaya hassleriana HOM05D002237 ORTHO05D002213 3.7e-24 116.3 306 33.0
FAN15G1416 Fragaria x ananassa HOM05D002237 ORTHO05D002213 6.4e-24 115.5 335 32.5
FAN27G2230 Fragaria x ananassa HOM05D002237 ORTHO05D002213 6.4e-24 115.5 342 36.0
PSO210G0663 Papaver somniferum HOM05D002237 ORTHO05D002213 8.4e-24 115.2 277 35.4
Thecc.09G054200 Theobroma cacao HOM05D002237 ORTHO05D002213 8.4e-24 115.2 343 34.7
AL4G18280 Arabidopsis lyrata HOM05D002237 ORTHO05D002213 1.9e-23 114.0 291 36.1
Ciclev10008860m.g Citrus clementina HOM05D002237 ORTHO05D002213 1.9e-23 114.0 357 31.9
Duzib150G1021 Durio zibethinus HOM05D002237 ORTHO05D002213 1.9e-23 114.0 335 33.7
CSS0026514 Camellia sinensis var. sinensis HOM05D002237 ORTHO05D002213 2.4e-23 113.6 273 33.3
FAN24G2308 Fragaria x ananassa HOM05D002237 ORTHO05D002213 2.4e-23 113.6 349 31.5
Aa31LG5G9660 Aethionema arabicum HOM05D002237 ORTHO05D002213 3.2e-23 113.2 311 35.0
MD08G1062500 Malus domestica HOM05D002237 ORTHO05D002213 4.1e-23 112.8 306 33.7
PSO210G3168 Papaver somniferum HOM05D002237 ORTHO05D002213 4.1e-23 112.8 277 34.7
Rhsim11G0044000 Rhododendron simsii HOM05D002237 ORTHO05D002213 4.1e-23 112.8 363 34.7
FvH4_2g31830 Fragaria vesca HOM05D002237 ORTHO05D002213 5.4e-23 112.5 349 31.5
PSO210G1183 Papaver somniferum HOM05D002237 ORTHO05D002213 5.4e-23 112.5 277 35.0
VMungo0647G2239 Vigna mungo HOM05D002237 ORTHO05D002213 9.2e-23 111.7 348 31.9
Phvul.001G036100 Phaseolus vulgaris HOM05D002237 ORTHO05D002213 1.6e-22 110.9 338 31.7
AT2G26110 Arabidopsis thaliana HOM05D002237 ORTHO05D002213 2.7e-22 110.2 295 35.3
Sp4g05990 Schrenkiella parvula HOM05D002237 ORTHO05D002213 4.6e-22 109.4 304 29.9
Cfa017959 Carpinus fangiana HOM05D002237 ORTHO05D002213 6.0e-22 109.0 349 33.8
Thhalv10002336m.g Eutrema salsugineum HOM05D002237 ORTHO05D002213 6.0e-22 109.0 294 34.4
Carub.0004s0595 Capsella rubella HOM05D002237 ORTHO05D002213 1.3e-21 107.8 312 36.2
Aqoxy7G01205 Aquilegia oxysepala HOM05D002237 ORTHO05D002213 1.7e-21 107.5 293 34.5
MSTRG.14057 Avicennia marina HOM05D002237 ORTHO05D002213 1.7e-21 107.5 327 33.0
CSS0012916 Camellia sinensis var. sinensis HOM05D002237 ORTHO05D002213 2.3e-21 107.1 284 40.8
Sabra18G0048700 Salix brachista HOM05D002237 ORTHO05D002213 2.3e-21 107.1 336 30.7
Sabra06G0177200 Salix brachista HOM05D002237 ORTHO05D002213 3.9e-21 106.3 341 31.7
Haze_18179 Corylus avellana HOM05D002237 ORTHO05D002213 5.1e-21 105.9 355 34.4
Lj5g0000472 Lotus japonicus HOM05D002237 ORTHO05D002213 1.1e-20 104.8 338 38.5
DCAR_004423 Daucus carota HOM05D002237 ORTHO05D002213 1.5e-20 104.4 297 41.4
TPR.G13085 Trifolium pratense HOM05D002237 ORTHO05D002213 2.5e-20 103.6 344 35.5
Haze_18186 Corylus avellana HOM05D002237 ORTHO05D002213 5.6e-20 102.4 355 35.2
Glyma.14G095300 Glycine max HOM05D002237 ORTHO05D002213 7.3e-20 102.1 360 31.1
THA.LOC104803792 Tarenaya hassleriana HOM05D002237 ORTHO05D002213 7.3e-20 102.1 325 32.6
PGR031G2556 Punica granatum HOM05D002237 ORTHO05D002213 9.6e-20 101.7 367 31.3
Gohir.A07G022100 Gossypium hirsutum HOM05D002237 ORTHO05D002213 8.1e-19 98.6 328 34.5
MSTRG.1684 Avicennia marina HOM05D002237 ORTHO05D002213 1.1e-18 98.2 339 33.9
Gohir.D07G022000 Gossypium hirsutum HOM05D002237 ORTHO05D002213 1.1e-18 98.2 325 30.2
Eucgr.C00651 Eucalyptus grandis HOM05D002237 ORTHO05D002213 1.4e-18 97.8 360 34.4
Migut.E01567 Erythranthe guttata HOM05D002237 ORTHO05D002213 1.8e-18 97.4 334 38.0
RcHm_v2.0_Chr6g0310991 Rosa chinensis HOM05D002237 ORTHO05D002213 1.8e-18 97.4 339 30.7
Ca_13160_v3 Cicer arietinum L. HOM05D002237 ORTHO05D002213 2.4e-18 97.1 350 30.0
Gorai.001G022700 Gossypium raimondii HOM05D002237 ORTHO05D002213 2.4e-18 97.1 325 30.8
Potri.006G228800 Populus trichocarpa HOM05D002237 ORTHO05D002213 2.4e-18 97.1 341 32.3
Medtr1g016100 Medicago truncatula HOM05D002237 ORTHO05D002213 4.0e-18 96.3 343 31.5
Nn6g35487 Nelumbo nucifera HOM05D002237 ORTHO05D002213 4.0e-18 96.3 260 34.6
Lsat_1_v5_gn_6_13421 Lactuca sativa HOM05D002237 ORTHO05D002213 5.2e-18 95.9 369 29.8
vmacro00140 Vaccinium macrocarpon HOM05D002237 ORTHO05D002213 5.2e-18 95.9 138 44.9
Nitab4.5_0001367g0050 Nicotiana tabacum HOM05D002237 ORTHO05D002213 1.5e-17 94.4 386 33.9
Solyc08g065150.1 Solanum lycopersicum HOM05D002237 ORTHO05D002213 1.5e-17 94.4 375 30.1
Oeu059606.1 Olea europaea HOM05D002237 ORTHO05D002213 2.0e-17 94.0 321 32.1
CAN.G352.21 Capsicum annuum HOM05D002237 ORTHO05D002213 3.4e-17 93.2 345 37.1
Sopen08g018730 Solanum pennellii HOM05D002237 ORTHO05D002213 4.4e-17 92.8 376 30.6
PGSC0003DMG400035559 Solanum tuberosum HOM05D002237 ORTHO05D002213 4.4e-17 92.8 385 30.4
QL02p001128 Quercus lobata HOM05D002237 ORTHO05D002213 5.8e-17 92.4 324 35.8
SGA_v2.0_scaffold163G38027 Striga asiatica HOM05D002237 ORTHO05D002213 9.9e-17 91.7 360 31.4
TAR383G0406 Trochodendron aralioides HOM05D002237 ORTHO05D002213 9.9e-17 91.7 268 33.6
AUR62039114 Chenopodium quinoa HOM05D002237 ORTHO05D002213 3.8e-16 89.7 99 48.5
ClCG05G017870 Citrullus lanatus HOM05D002237 ORTHO05D002213 3.8e-16 89.7 147 41.5
Sed0018033 Sechium edule HOM05D002237 ORTHO05D002213 4.9e-16 89.4 139 41.7
CiPaw.15G038600 Carya illinoinensis HOM05D002237 ORTHO05D002213 1.4e-15 87.8 134 42.5
MELO3C016871.2 Cucumis melo HOM05D002237 ORTHO05D002213 1.9e-15 87.4 143 37.8
Dinv36772 Davidia involucrata HOM05D002237 ORTHO05D002213 3.2e-15 86.7 275 29.5
Peaxi162Scf01444g00003 Petunia axillaris HOM05D002237 ORTHO05D002213 5.4e-15 85.9 372 35.5
PGR142G4283 Punica granatum HOM05D002237 ORTHO05D002213 7.1e-15 85.5 371 28.6
ECA233G4745 Erigeron canadensis HOM05D002237 ORTHO05D002213 1.6e-14 84.3 375 30.7
SGA_v2.0_scaffold169G38695 Striga asiatica HOM05D002237 ORTHO05D002213 2.1e-14 84.0 344 26.7
Lalb_Chr22g0356091 Lupinus albus HOM05D002237 ORTHO05D002213 3.5e-14 83.2 341 31.4
Potri.018G053000 Populus trichocarpa HOM05D002237 ORTHO05D002213 3.5e-14 83.2 349 33.0
TAR636G2243 Trochodendron aralioides HOM05D002237 ORTHO05D002213 4.6e-14 82.8 342 31.6
MBI01_g16600_MAGBIO Magnolia biondii HOM05D000250 ORTHO05D000625 6.0e-14 82.4 279 33.0
TAR624G1451 Trochodendron aralioides HOM05D002237 ORTHO05D002213 7.8e-14 82.0 117 45.3
CsaV3_4G035640 Cucumis sativus L. HOM05D002237 ORTHO05D002213 1.0e-13 81.6 138 38.4
Cc08_g10640 Coffea canephora HOM05D002237 ORTHO05D002213 1.3e-13 81.3 400 26.0
Nitab4.5_0003939g0020 Nicotiana tabacum HOM05D002237 ORTHO05D002213 2.3e-13 80.5 141 39.0
BcaC07g39780 Brassica carinata HOM05D002237 ORTHO05D002213 3.0e-13 80.1 300 27.3
C08p29980 Brassica napus HOM05D002237 ORTHO05D002213 3.0e-13 80.1 300 27.3
BolC8t50607H Brassica oleracea HOM05D002237 ORTHO05D002213 3.0e-13 80.1 300 27.3
COL.COLO4_21062 Corchorus olitorius HOM05D002237 ORTHO05D002213 3.0e-13 80.1 267 29.6
Lj7P270T5 Lonicera japonica HOM05D002237 ORTHO05D002213 6.6e-13 79.0 145 37.2
MSTRG.25948 Avicennia marina HOM05D002237 ORTHO05D002213 1.5e-12 77.8 327 27.2
BraA09t40233Z Brassica rapa HOM05D002237 ORTHO05D002213 2.5e-12 77.0 305 27.9
HanXRQChr07g0192621 Helianthus annuus HOM05D002237 ORTHO05D002213 3.3e-12 76.6 391 26.9
Lalb_Chr14g0366301 Lupinus albus HOM05D002237 ORTHO05D002213 3.3e-12 76.6 125 41.6
A09p47750 Brassica napus HOM05D002237 ORTHO05D002213 5.6e-12 75.9 305 29.2
TAR626G0565 Trochodendron aralioides HOM05D001162 ORTHO05D001218 5.6e-12 75.9 142 37.3
Manes.16G101500 Manihot esculenta HOM05D002237 ORTHO05D002213 9.6e-12 75.1 272 29.4
Psat6g020080 Pisum sativum HOM05D002237 ORTHO05D002213 1.3e-11 74.7 241 27.8
VMungo1309G0962 Vigna mungo HOM05D002237 ORTHO05D002213 1.3e-11 74.7 293 28.0
Migut.A00134 Erythranthe guttata HOM05D002237 ORTHO05D002213 2.1e-11 73.9 258 29.8
Hma1.2p1_0798F.1_g219850 Hydrangea macrophylla HOM05D002237 ORTHO05D002213 1.8e-10 70.9 277 35.4
ClCG03G015520 Citrullus lanatus HOM05D002237 ORTHO05D002213 6.9e-10 68.9 273 26.0
CiPaw.03G215600 Carya illinoinensis HOM05D002237 ORTHO05D002213 9.0e-10 68.6 269 28.3
Ciclev10009087m.g Citrus clementina HOM05D002237 ORTHO05D002213 9.0e-10 68.6 301 28.9
Cc06_g11460 Coffea canephora HOM05D002237 ORTHO05D002213 1.2e-09 68.2 268 32.1
Cc03_g09990 Coffea canephora HOM05D002237 ORTHO05D002213 2.0e-09 67.4 99 46.5
CsaV3_1G040530 Cucumis sativus L. HOM05D002237 ORTHO05D002213 2.0e-09 67.4 265 31.7
MBI04_g31169_MAGBIO Magnolia biondii HOM05D002237 ORTHO05D002213 2.0e-09 67.4 318 24.5
MD15G1207800 Malus domestica HOM05D002237 ORTHO05D002213 2.0e-09 67.4 311 28.0
Manes.03G034300 Manihot esculenta HOM05D002237 ORTHO05D002213 2.0e-09 67.4 297 28.3
Phvul.009G232000 Phaseolus vulgaris HOM05D002237 ORTHO05D002213 2.0e-09 67.4 284 25.4
BcaB01g00157 Brassica carinata HOM05D002237 ORTHO05D002213 3.4e-09 66.6 301 32.9
Prupe.7G209100 Prunus persica HOM05D002237 ORTHO05D002213 4.4e-09 66.2 278 34.9
Oeu036333.1 Olea europaea HOM05D002237 ORTHO05D002213 7.6e-09 65.5 316 32.9
Rhsim05G0020400 Rhododendron simsii HOM05D002237 ORTHO05D002213 1.3e-08 64.7 303 30.0
Oeu041232.1 Olea europaea HOM05D002237 ORTHO05D002213 2.2e-08 63.9 272 29.8
unitig_748.g7525 Utricularia gibba HOM05D002237 ORTHO05D002213 2.2e-08 63.9 280 33.2
Nitab4.5_0000095g0170 Nicotiana tabacum HOM05D002237 ORTHO05D002213 2.9e-08 63.5 282 27.3
BolC9t57710H Brassica oleracea HOM05D002237 ORTHO05D002213 3.8e-08 63.2 337 27.0
CDE05G2600 Ceratophyllum demersum HOM05D002237 ORTHO05D002213 3.8e-08 63.2 287 32.1
BcaNung05239 Brassica carinata HOM05D002237 ORTHO05D002213 4.9e-08 62.8 317 26.2
MBI04_g31173_MAGBIO Magnolia biondii HOM05D002237 ORTHO05D002213 4.9e-08 62.8 312 23.1
Ah.09g226560 Amaranthus hybridus HOM05D000399 ORTHO05D000304 6.4e-08 62.4 99 62.6
MSTRG.19510 Avicennia marina HOM05D002237 ORTHO05D002213 6.4e-08 62.4 255 29.4
CiPaw.16G028400 Carya illinoinensis HOM05D002237 ORTHO05D002213 8.4e-08 62.0 109 48.6
HanXRQChr03g0060491 Helianthus annuus HOM05D002237 ORTHO05D002213 8.4e-08 62.0 298 27.9
Lsat_1_v5_gn_7_37001 Lactuca sativa HOM05D002237 ORTHO05D002213 8.4e-08 62.0 102 38.2
MBI04_g31172_MAGBIO Magnolia biondii HOM05D002237 ORTHO05D002213 8.4e-08 62.0 307 29.3
CARHR233650 Cardamine hirsuta HOM05D002237 ORTHO05D002213 2.4e-07 60.5 286 25.9
CDE05G0947 Ceratophyllum demersum HOM05D002237 ORTHO05D002213 2.4e-07 60.5 286 32.2
Actinidia25249 Actinidia chinensis HOM05D002237 ORTHO05D002213 3.2e-07 60.1 307 33.6
A01p17410 Brassica napus HOM05D002237 ORTHO05D002213 3.2e-07 60.1 301 25.6
BraA01t01695Z Brassica rapa HOM05D002237 ORTHO05D002213 3.2e-07 60.1 301 25.6
Sed0011201 Sechium edule HOM05D002237 ORTHO05D002213 3.2e-07 60.1 267 31.5
ATR0749G108 Amborella trichopoda HOM05D002237 ORTHO05D002213 4.2e-07 59.7 280 32.1
MELO3C015480.2 Cucumis melo HOM05D002237 ORTHO05D002213 4.2e-07 59.7 261 31.4
Oeu041234.1 Olea europaea HOM05D002237 ORTHO05D002213 4.2e-07 59.7 262 29.4
Sabra06G0120500 Salix brachista HOM05D002237 ORTHO05D002213 5.4e-07 59.3 264 28.8
Sopen05g016140 Solanum pennellii HOM05D002237 ORTHO05D002213 5.4e-07 59.3 261 27.2
Thhalv10025915m.g Eutrema salsugineum HOM05D002237 ORTHO05D002213 7.1e-07 58.9 308 26.9
Glyma.15G170100 Glycine max HOM05D002237 ORTHO05D002213 7.1e-07 58.9 293 25.3
Gohir.A07G011600 Gossypium hirsutum HOM05D002237 ORTHO05D002213 7.1e-07 58.9 286 31.8
Oeu041228.1 Olea europaea HOM05D002237 ORTHO05D002213 7.1e-07 58.9 263 27.8
Solyc05g018820.1 Solanum lycopersicum HOM05D002237 ORTHO05D002213 7.1e-07 58.9 261 27.2
Eucgr.C00891 Eucalyptus grandis HOM05D002237 ORTHO05D002213 9.3e-07 58.5 292 28.8
Nitab4.5_0003648g0010 Nicotiana tabacum HOM05D002237 ORTHO05D002213 9.3e-07 58.5 283 30.0
Cfa003084 Carpinus fangiana HOM05D002237 ORTHO05D002213 1.2e-06 58.2 290 26.9
Cc11_g08620 Coffea canephora HOM05D002237 ORTHO05D002213 1.2e-06 58.2 101 45.5
Sp7g24150 Schrenkiella parvula HOM05D002237 ORTHO05D002213 1.2e-06 58.2 315 23.8
Os05g0540900 Oryza sativa ssp. japonica HOM05D002237 ORTHO05D002213 1.6e-06 57.8 44 59.1
vmacro17244 Vaccinium macrocarpon HOM05D002237 ORTHO05D002213 2.1e-06 57.4 105 36.2
Lsat_1_v5_gn_5_47580 Lactuca sativa HOM05D002237 ORTHO05D002213 3.5e-06 56.6 356 31.7
AL52U10060 Arabidopsis lyrata HOM05D002237 ORTHO05D002213 4.6e-06 56.2 195 27.2
AL8G32850 Arabidopsis lyrata HOM05D002237 ORTHO05D002213 4.6e-06 56.2 195 27.2
Oeu041233.1 Olea europaea HOM05D002237 ORTHO05D002213 4.6e-06 56.2 261 28.7
SEGI_13547 Sequoiadendron giganteum HOM05D002237 ORTHO05D002213 4.6e-06 56.2 271 26.2
MBI04_g31165_MAGBIO Magnolia biondii HOM05D002237 ORTHO05D002213 6.0e-06 55.8 306 23.5
MD02G1080400 Malus domestica HOM05D002237 ORTHO05D002213 7.9e-06 55.5 91 38.5


User provided reference genes

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