Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 1.8e-51 205.7 110 100.0
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 2.3e-30 135.6 110 68.2
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 1.0e-25 120.2 111 56.8
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 8.6e-25 117.1 105 62.9
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 1.9e-24 115.9 106 59.4
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 1.9e-24 115.9 106 57.5
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 1.9e-24 115.9 106 58.5
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 3.3e-24 115.2 104 61.5
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 4.3e-24 114.8 102 59.8
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 4.3e-24 114.8 102 59.8
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 4.3e-24 114.8 102 59.8
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 7.3e-24 114.0 105 61.9
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 7.3e-24 114.0 106 56.6
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 9.5e-24 113.6 102 57.8
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 1.6e-23 112.8 106 57.5
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 2.8e-23 112.1 103 61.2
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 3.6e-23 111.7 100 59.0
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 3.6e-23 111.7 101 59.4
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 4.7e-23 111.3 102 55.9
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 1.8e-22 109.4 106 59.4
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 2.4e-22 109.0 104 58.7
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 3.1e-22 108.6 106 55.7
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 5.2e-22 107.8 102 58.8
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 6.8e-22 107.5 106 57.5
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 6.8e-22 107.5 106 53.8
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 6.8e-22 107.5 107 54.2
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 8.9e-22 107.1 103 58.3
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 2.0e-21 105.9 106 53.8
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 2.0e-21 105.9 106 53.8
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 2.0e-21 105.9 106 56.6
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 2.6e-21 105.5 106 54.7
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 2.6e-21 105.5 104 57.7
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 2.6e-21 105.5 106 56.6
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 4.4e-21 104.8 106 51.9
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 7.6e-21 104.0 107 54.2
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 7.6e-21 104.0 103 54.4
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 9.9e-21 103.6 106 56.6
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 9.9e-21 103.6 106 51.9
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 1.3e-20 103.2 106 51.9
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 1.3e-20 103.2 106 52.8
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 1.3e-20 103.2 103 55.3
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 1.7e-20 102.8 103 55.3
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 1.7e-20 102.8 106 52.8
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 1.7e-20 102.8 106 52.8
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 2.2e-20 102.4 112 51.8
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 2.2e-20 102.4 108 55.6
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 4.9e-20 101.3 106 51.9
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 6.4e-20 100.9 106 55.7
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 6.4e-20 100.9 98 54.1
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 1.4e-19 99.8 98 52.0
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 1.4e-19 99.8 104 52.9
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 1.9e-19 99.4 97 56.7
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 2.4e-19 99.0 105 55.2
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 2.4e-19 99.0 100 57.0
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 5.4e-19 97.8 91 58.2
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 7.1e-19 97.4 107 47.7
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 9.2e-19 97.1 109 51.4
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 1.2e-18 96.7 103 55.3
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 1.2e-18 96.7 110 47.3
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 2.7e-18 95.5 98 50.0
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 3.5e-18 95.1 103 53.4
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 3.5e-18 95.1 103 53.4
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.6e-18 94.7 106 50.9
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 7.8e-18 94.0 103 48.5
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 5.1e-17 91.3 101 51.5
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 2.5e-16 89.0 103 49.5
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 2.1e-15 85.9 107 47.7
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 2.1e-15 85.9 111 43.2
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 2.8e-15 85.5 101 47.5
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 3.6e-15 85.1 102 45.1
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 4.7e-15 84.7 98 44.9
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 8.1e-15 84.0 100 53.0
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 1.4e-14 83.2 102 48.0
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 1.4e-14 83.2 102 48.0
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 1.4e-14 83.2 102 48.0
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 1.4e-14 83.2 102 48.0
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 1.4e-14 83.2 104 45.2
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 1.8e-14 82.8 100 47.0
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 1.8e-14 82.8 104 46.2
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 1.2e-13 80.1 102 46.1
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 3.4e-13 78.6 107 43.9
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 5.8e-13 77.8 85 49.4
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 1.3e-12 76.6 102 43.1
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 1.7e-12 76.3 111 41.4
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 1.7e-12 76.3 101 43.6
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 2.9e-12 75.5 89 46.1
Atru.chr7.1844 Acer truncatum HOM05D007692 ORTHO05D009696 3.2e-11 72.0 72 55.6
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 1.6e-10 69.7 107 43.9
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 4.6e-10 68.2 102 41.2
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 1.0e-09 67.0 107 43.9
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 1.7e-09 66.2 111 37.8
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 3.0e-09 65.5 67 50.7
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 1.5e-08 63.2 111 36.0
Duzib150G0238 Durio zibethinus HOM05D007692 ORTHO05D009696 3.3e-08 62.0 148 32.4
Lalb_Chr14g0366461 Lupinus albus HOM05D007692 ORTHO05D009696 7.3e-08 60.8 69 49.3
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 2.8e-07 58.9 101 37.6
TAR624G1426 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.8e-06 56.2 72 44.4


User provided reference genes

Program Settings