Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03719 Beta vulgaris HOM05D006422 ORTHO05D007992 9.4e-136 486.9 250 100.0
AUR62020627 Chenopodium quinoa HOM05D006422 ORTHO05D007992 5.1e-97 358.2 258 77.1
Sc09g0007930 Simmondsia chinensis HOM05D006422 ORTHO05D007992 8.1e-79 297.7 250 64.4
Cfa013253 Carpinus fangiana HOM05D006422 ORTHO05D007992 2.4e-78 296.2 219 71.2
AUR62038756 Chenopodium quinoa HOM05D006422 ORTHO05D007992 5.3e-78 295.0 180 81.7
Solyc08g006160.4 Solanum lycopersicum HOM05D006422 ORTHO05D007992 1.2e-77 293.9 227 67.0
Aqoxy5G03915 Aquilegia oxysepala HOM05D006422 ORTHO05D007992 4.5e-77 292.0 218 70.2
Sopen08g002130 Solanum pennellii HOM05D006422 ORTHO05D007992 9.9e-77 290.8 227 66.5
Dinv10868 Davidia involucrata HOM05D006422 ORTHO05D007992 1.7e-76 290.0 253 63.6
Dinv26550 Davidia involucrata HOM05D006422 ORTHO05D007992 1.7e-76 290.0 253 63.6
TAR383G0184 Trochodendron aralioides HOM05D006422 ORTHO05D007992 1.7e-76 290.0 249 64.7
Nn1g01726 Nelumbo nucifera HOM05D006422 ORTHO05D007992 2.2e-76 289.7 251 66.1
Actinidia03579 Actinidia chinensis HOM05D006422 ORTHO05D007992 1.1e-75 287.3 208 69.7
Migut.A00443 Erythranthe guttata HOM05D006422 ORTHO05D007992 1.1e-75 287.3 253 60.9
Sabra06G0214100 Salix brachista HOM05D006422 ORTHO05D007992 1.1e-75 287.3 252 63.5
CiPaw.07G214400 Carya illinoinensis HOM05D006422 ORTHO05D007992 1.4e-75 287.0 210 71.0
PGSC0003DMG400009533 Solanum tuberosum HOM05D006422 ORTHO05D007992 4.2e-75 285.4 253 61.7
CANSAT25G0758 Cannabis sativa HOM05D006422 ORTHO05D007992 5.4e-75 285.0 252 62.3
Manes.16G136400 Manihot esculenta HOM05D006422 ORTHO05D007992 9.3e-75 284.3 226 67.7
Lj5g0012981 Lotus japonicus HOM05D006422 ORTHO05D007992 1.2e-74 283.9 251 63.3
QL12p024696 Quercus lobata HOM05D006422 ORTHO05D007992 2.1e-74 283.1 236 64.4
CAN.G1364.3 Capsicum annuum HOM05D006422 ORTHO05D007992 2.7e-74 282.7 221 65.6
Ciclev10009324m.g Citrus clementina HOM05D006422 ORTHO05D007992 2.7e-74 282.7 254 63.4
Cc04_g09430 Coffea canephora HOM05D006422 ORTHO05D007992 7.9e-74 281.2 223 66.4
GSVIVG01035544001 Vitis vinifera HOM05D006422 ORTHO05D007992 1.0e-73 280.8 251 62.2
PSO170G4757 Papaver somniferum HOM05D006422 ORTHO05D007992 1.3e-73 280.4 262 60.3
Atru.chr7.2615_Atru.chr7.2616 Acer truncatum HOM05D006422 ORTHO05D007992 2.3e-73 279.6 250 62.4
COL.COLO4_18610 Corchorus olitorius HOM05D006422 ORTHO05D007992 6.7e-73 278.1 262 60.3
PSO017G3510 Papaver somniferum HOM05D006422 ORTHO05D007992 8.7e-73 277.7 260 60.8
Rhsim07G0170200 Rhododendron simsii HOM05D006422 ORTHO05D007992 8.7e-73 277.7 242 61.2
Lalb_Chr14g0362181 Lupinus albus HOM05D006422 ORTHO05D007992 1.1e-72 277.3 204 70.1
MBI13_g31531_MAGBIO Magnolia biondii HOM05D006422 ORTHO05D007992 1.5e-72 276.9 188 71.8
Potri.006G276400 Populus trichocarpa HOM05D006422 ORTHO05D007992 1.5e-72 276.9 252 62.7
MSTRG.11814 Avicennia marina HOM05D006422 ORTHO05D007992 3.3e-72 275.8 246 60.6
Thecc.09G005200 Theobroma cacao HOM05D006422 ORTHO05D007992 4.3e-72 275.4 249 63.1
Medtr1g009980 Medicago truncatula HOM05D006422 ORTHO05D007992 9.6e-72 274.2 252 60.3
Prupe.1G462100 Prunus persica HOM05D006422 ORTHO05D007992 9.6e-72 274.2 218 65.6
FvH4_2g30680 Fragaria vesca HOM05D006422 ORTHO05D007992 1.6e-71 273.5 248 60.9
FAN24G2382 Fragaria x ananassa HOM05D006422 ORTHO05D007992 2.1e-71 273.1 248 60.9
Hma1.2p1_0534F.1_g173720 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 2.1e-71 273.1 204 68.1
Nitab4.5_0000025g0080 Nicotiana tabacum HOM05D006422 ORTHO05D007992 2.1e-71 273.1 258 59.7
PGR042G1463 Punica granatum HOM05D006422 ORTHO05D007992 2.1e-71 273.1 247 61.5
FAN27G3442 Fragaria x ananassa HOM05D006422 ORTHO05D007992 2.8e-71 272.7 248 60.9
MD15G1109900 Malus domestica HOM05D006422 ORTHO05D007992 2.8e-71 272.7 260 60.4
Lsat_1_v5_gn_5_61061 Lactuca sativa HOM05D006422 ORTHO05D007992 4.8e-71 271.9 264 61.0
ATR0626G032 Amborella trichopoda HOM05D006422 ORTHO05D007992 6.2e-71 271.6 208 66.3
HanXRQChr13g0412481 Helianthus annuus HOM05D006422 ORTHO05D007992 6.2e-71 271.6 250 60.0
RcHm_v2.0_Chr6g0312201 Rosa chinensis HOM05D006422 ORTHO05D007992 8.1e-71 271.2 248 60.1
Peaxi162Scf00045g01530 Petunia axillaris HOM05D006422 ORTHO05D007992 1.1e-70 270.8 214 65.4
Phvul.001G058000 Phaseolus vulgaris HOM05D006422 ORTHO05D007992 1.1e-70 270.8 248 60.9
VMungo0647G2190 Vigna mungo HOM05D006422 ORTHO05D007992 1.1e-70 270.8 248 60.9
CDE04G2326 Ceratophyllum demersum HOM05D006422 ORTHO05D007992 3.1e-70 269.2 231 62.3
Duzib168G1765 Durio zibethinus HOM05D006422 ORTHO05D007992 4.0e-70 268.9 251 59.0
Gohir.D06G108900 Gossypium hirsutum HOM05D006422 ORTHO05D007992 4.0e-70 268.9 248 60.9
THA.LOC104811048 Tarenaya hassleriana HOM05D006422 ORTHO05D007992 4.0e-70 268.9 254 60.2
Gorai.010G123700 Gossypium raimondii HOM05D006422 ORTHO05D007992 5.3e-70 268.5 248 60.9
Eucgr.C02103 Eucalyptus grandis HOM05D006422 ORTHO05D007992 6.9e-70 268.1 253 60.5
Ca_12880_v3 Cicer arietinum L. HOM05D006422 ORTHO05D007992 1.2e-69 267.3 248 59.7
TPR.G11997 Trifolium pratense HOM05D006422 ORTHO05D007992 2.6e-69 266.2 248 57.3
unitig_748.g7381 Utricularia gibba HOM05D006422 ORTHO05D007992 2.6e-69 266.2 200 67.0
TWI34G0909 Tripterygium wilfordii HOM05D006422 ORTHO05D007992 3.4e-69 265.8 250 60.4
Haze_21696 Corylus avellana HOM05D006422 ORTHO05D007992 7.6e-69 264.6 174 74.1
A03p09710 Brassica napus HOM05D006422 ORTHO05D007992 1.7e-68 263.5 253 58.5
BraA03t10287Z Brassica rapa HOM05D006422 ORTHO05D007992 1.7e-68 263.5 253 58.5
Thhalv10014537m.g Eutrema salsugineum HOM05D006422 ORTHO05D007992 1.7e-68 263.5 255 58.4
Psat6g032000 Pisum sativum HOM05D006422 ORTHO05D007992 2.2e-68 263.1 245 57.1
BcaB01g04848 Brassica carinata HOM05D006422 ORTHO05D007992 2.9e-68 262.7 255 58.0
vmacro05107 Vaccinium macrocarpon HOM05D006422 ORTHO05D007992 3.8e-68 262.3 201 65.2
Gohir.A06G106700 Gossypium hirsutum HOM05D006422 ORTHO05D007992 6.4e-68 261.5 252 59.9
A10p19790 Brassica napus HOM05D006422 ORTHO05D007992 1.4e-67 260.4 250 58.0
BraA10t44055Z Brassica rapa HOM05D006422 ORTHO05D007992 1.4e-67 260.4 250 58.0
BcaB01g04822 Brassica carinata HOM05D006422 ORTHO05D007992 1.9e-67 260.0 257 57.2
BcaC04g19400 Brassica carinata HOM05D006422 ORTHO05D007992 1.9e-67 260.0 255 57.6
C03p11290 Brassica napus HOM05D006422 ORTHO05D007992 1.9e-67 260.0 257 57.2
C09p56110 Brassica napus HOM05D006422 ORTHO05D007992 1.9e-67 260.0 255 57.6
BolC9t58478H Brassica oleracea HOM05D006422 ORTHO05D007992 1.9e-67 260.0 255 57.6
Sp6g24440 Schrenkiella parvula HOM05D006422 ORTHO05D007992 1.9e-67 260.0 255 57.3
Ah.11g043920 Amaranthus hybridus HOM05D006422 ORTHO05D007992 2.4e-67 259.6 222 65.3
BcaB08g36552 Brassica carinata HOM05D006422 ORTHO05D007992 2.4e-67 259.6 256 57.4
BolC3t13599H Brassica oleracea HOM05D006422 ORTHO05D007992 3.2e-67 259.2 257 57.2
Nitab4.5_0003259g0070 Nicotiana tabacum HOM05D006422 ORTHO05D007992 7.1e-67 258.1 233 60.5
Aa31LG9G9500 Aethionema arabicum HOM05D006422 ORTHO05D007992 1.2e-66 257.3 253 58.1
AT5G19940 Arabidopsis thaliana HOM05D006422 ORTHO05D007992 1.2e-66 257.3 254 56.7
arahy.Tifrunner.gnm1.ann1.43EIBT Arachis hypogaea HOM05D006422 ORTHO05D007992 1.2e-66 257.3 255 56.5
CARHR192910 Cardamine hirsuta HOM05D006422 ORTHO05D007992 2.7e-66 256.1 255 55.7
AL6G31470 Arabidopsis lyrata HOM05D006422 ORTHO05D007992 6.0e-66 255.0 255 56.1
SGA_v2.0_scaffold27G11666 Striga asiatica HOM05D006422 ORTHO05D007992 6.0e-66 255.0 249 57.4
Carub.0006s1831 Capsella rubella HOM05D006422 ORTHO05D007992 7.9e-66 254.6 256 56.2
DCAR_003025 Daucus carota HOM05D006422 ORTHO05D007992 1.0e-65 254.2 249 56.2
arahy.Tifrunner.gnm1.ann1.D9GJPD Arachis hypogaea HOM05D006422 ORTHO05D007992 3.9e-65 252.3 255 56.1
HPP92_004705 Vanilla planifolia HOM05D006422 ORTHO05D007992 6.7e-65 251.5 209 61.7
Zm00001eb071430 Zea mays HOM05D006422 ORTHO05D007992 7.4e-64 248.1 243 58.4
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 1.1e-62 244.2 261 56.7
Oeu018400.2 Olea europaea HOM05D006422 ORTHO05D007992 1.1e-62 244.2 171 69.0
ECA240G0283 Erigeron canadensis HOM05D000069 ORTHO05D000060 6.9e-62 241.5 184 64.1
Os04g0607000 Oryza sativa ssp. japonica HOM05D006422 ORTHO05D007992 6.9e-62 241.5 238 55.9
FAN20G1184 Fragaria x ananassa HOM05D006422 ORTHO05D007992 1.3e-60 237.3 227 58.1
Glyma.17G201600 Glycine max HOM05D006422 ORTHO05D007992 4.9e-60 235.3 244 57.0
SEGI_33970 Sequoiadendron giganteum HOM05D006422 ORTHO05D007992 3.0e-57 226.1 204 53.9
CiPaw.08G017800 Carya illinoinensis HOM05D006422 ORTHO05D007992 9.6e-56 221.1 220 59.1
FAN15G3645 Fragaria x ananassa HOM05D006422 ORTHO05D007992 6.5e-52 208.4 208 56.7
Lj7A749G60 Lonicera japonica HOM05D006422 ORTHO05D007992 3.9e-49 199.1 137 70.8
AagrBONN_evm.TU.Sc2ySwM_228.4709 Anthoceros agrestis HOM05D006422 ORTHO05D007992 1.9e-48 196.8 180 50.0
Mapoly0021s0119 Marchantia polymorpha HOM05D006422 ORTHO05D007992 5.7e-48 195.3 208 48.1
Pp3c13_4790 Physcomitrium patens HOM05D006422 ORTHO05D007992 2.2e-47 193.4 211 44.5
MELO3C011201.2 Cucumis melo HOM05D006422 ORTHO05D007992 1.4e-46 190.7 186 60.2
SMO364G0843 Selaginella moellendorffii HOM05D006422 ORTHO05D007992 3.1e-46 189.5 181 52.5
CSS0034711 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 1.5e-45 187.2 131 71.0
CSS0017479 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 1.7e-44 183.7 119 74.8
Hma1.2p1_0534F.1_g173730 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 3.8e-44 182.6 127 70.9
Gorai.002G101300 Gossypium raimondii HOM05D006422 ORTHO05D007992 3.4e-37 159.5 127 65.4
CSS0035518 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 8.2e-31 138.3 107 61.7
Oeu014126.1 Olea europaea HOM05D006422 ORTHO05D007992 1.2e-26 124.4 108 62.0
CBR_g3792 Chara braunii HOM05D006422 ORTHO05D007992 4.4e-24 115.9 189 32.8
MCO15G093 Micromonas commoda HOM05D006422 ORTHO05D007992 9.7e-24 114.8 201 35.8
Hund19396 Selenicereus undatus HOM05D006422 ORTHO05D007992 1.7e-23 114.0 121 64.5
Cre12.g502250 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 1.2e-21 107.8 213 33.8
PRCOL_00004658 Prasinoderma coloniale HOM05D006422 ORTHO05D007992 1.1e-19 101.3 208 34.1
Cre07.g325736 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 1.0e-12 78.2 119 33.6
Phvul.006G214200 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 2.6e-08 63.5 185 24.9
Nitab4.5_0002245g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 4.4e-08 62.8 196 24.5
VMungo0540G0086 Vigna mungo HOM05D003483 ORTHO05D004101 4.4e-08 62.8 247 25.5
Nn1g08897 Nelumbo nucifera HOM05D003483 ORTHO05D004101 5.7e-08 62.4 191 24.1
Manes.07G014600 Manihot esculenta HOM05D003483 ORTHO05D004101 7.5e-08 62.0 188 25.0
Nitab4.5_0003819g0040 Nicotiana tabacum HOM05D003483 ORTHO05D004101 9.8e-08 61.6 196 23.5
vmacro01768 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 1.3e-07 61.2 260 23.8
Glyma.08G185800 Glycine max HOM05D003483 ORTHO05D004101 1.7e-07 60.8 207 23.7
Glyma.15G047000 Glycine max HOM05D003483 ORTHO05D004101 1.7e-07 60.8 185 23.2
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 1.7e-07 60.8 188 24.5
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 2.2e-07 60.5 269 24.2
SalBow6G7247 Salvia bowleyana HOM05D003483 ORTHO05D004101 2.2e-07 60.5 253 26.1
AagrBONN_evm.TU.Sc2ySwM_344.1832 Anthoceros agrestis HOM05D003483 ORTHO05D004101 2.8e-07 60.1 185 25.9
Cc02_g22350 Coffea canephora HOM05D003483 ORTHO05D004101 2.8e-07 60.1 188 23.4
Lsat_1_v5_gn_9_118240 Lactuca sativa HOM05D003483 ORTHO05D004101 2.8e-07 60.1 251 24.7
PGR142G1721 Punica granatum HOM05D003483 ORTHO05D004101 2.8e-07 60.1 191 23.6
CsaV3_1G045010 Cucumis sativus L. HOM05D003483 ORTHO05D004101 3.7e-07 59.7 188 23.4
HanXRQChr03g0066831 Helianthus annuus HOM05D003483 ORTHO05D004101 3.7e-07 59.7 193 23.3
MD15G1421500 Malus domestica HOM05D003483 ORTHO05D004101 3.7e-07 59.7 194 23.2
SalBow6G5560 Salvia bowleyana HOM05D003483 ORTHO05D004101 3.7e-07 59.7 253 25.7
MELO3C010097.2 Cucumis melo HOM05D003483 ORTHO05D004101 4.9e-07 59.3 188 22.9
FvH4_5g29660 Fragaria vesca HOM05D003483 ORTHO05D004101 4.9e-07 59.3 191 24.1
Lj6g0022843 Lotus japonicus HOM05D003483 ORTHO05D004101 4.9e-07 59.3 180 23.3
MBI03_g28296_MAGBIO Magnolia biondii HOM05D003483 ORTHO05D004101 4.9e-07 59.3 257 24.9
Thecc.02G039800 Theobroma cacao HOM05D003483 ORTHO05D004101 4.9e-07 59.3 192 24.0
TAR381G1595 Trochodendron aralioides HOM05D003483 ORTHO05D004101 4.9e-07 59.3 191 23.0
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 6.3e-07 58.9 188 23.4
CSS0026849 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 6.3e-07 58.9 207 24.2
ECA240G0807 Erigeron canadensis HOM05D003483 ORTHO05D004101 6.3e-07 58.9 188 25.0
Hma1.2p1_0557F.1_g178380 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 6.3e-07 58.9 270 23.3
Peaxi162Scf00011g00242 Petunia axillaris HOM05D003483 ORTHO05D004101 6.3e-07 58.9 197 23.9
Cc02_g22380 Coffea canephora HOM05D003483 ORTHO05D004101 8.3e-07 58.5 198 22.7
CAN.G1577.5 Capsicum annuum HOM05D003483 ORTHO05D004101 1.1e-06 58.2 187 25.1
CiPaw.05G043400 Carya illinoinensis HOM05D003483 ORTHO05D004101 1.1e-06 58.2 192 23.4
FAN13G0976 Fragaria x ananassa HOM05D003483 ORTHO05D004101 1.1e-06 58.2 191 23.6
Hma1.2p1_0217F.1_g091970 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 1.1e-06 58.2 189 23.8
Atru.chr6.836 Acer truncatum HOM05D003483 ORTHO05D004101 1.4e-06 57.8 184 22.3
MSTRG.5236 Avicennia marina HOM05D003483 ORTHO05D004101 1.4e-06 57.8 241 24.5
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 1.4e-06 57.8 201 23.9
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 1.4e-06 57.8 231 24.7
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 1.4e-06 57.8 271 23.6
RcHm_v2.0_Chr7g0222941 Rosa chinensis HOM05D003483 ORTHO05D004101 1.4e-06 57.8 191 24.1
arahy.Tifrunner.gnm1.ann1.021TT5 Arachis hypogaea HOM05D003483 ORTHO05D004101 1.8e-06 57.4 187 22.5
Cre11.g478850 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 1.8e-06 57.4 210 25.7
SGA_v2.0_scaffold145G36069 Striga asiatica HOM05D003483 ORTHO05D004101 1.8e-06 57.4 185 23.8
TWI59G0966 Tripterygium wilfordii HOM05D003483 ORTHO05D004101 1.8e-06 57.4 193 23.8
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 1.8e-06 57.4 191 25.7
FAN18G3047 Fragaria x ananassa HOM05D003483 ORTHO05D004101 2.4e-06 57.0 191 23.6
Psat1g224560 Pisum sativum HOM05D003483 ORTHO05D004101 2.4e-06 57.0 263 25.5
CAN.G336.10 Capsicum annuum HOM05D003483 ORTHO05D004101 3.1e-06 56.6 192 22.9
Os03g0704100 Oryza sativa ssp. japonica HOM05D003483 ORTHO05D004101 3.1e-06 56.6 251 26.3
Dinv19357 Davidia involucrata HOM05D003483 ORTHO05D004101 5.4e-06 55.8 236 21.2
Eucgr.I02715 Eucalyptus grandis HOM05D003483 ORTHO05D004101 5.4e-06 55.8 242 23.6
Lsat_1_v5_gn_9_118261 Lactuca sativa HOM05D003483 ORTHO05D004101 7.0e-06 55.5 188 22.3
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 7.0e-06 55.5 188 23.4
Cpa.g.sc2.4 Carica papaya HOM05D003483 ORTHO05D004101 9.2e-06 55.1 188 22.3
Cfa005534 Carpinus fangiana HOM05D003483 ORTHO05D004101 9.2e-06 55.1 191 22.5
Ca_00080_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 9.2e-06 55.1 245 23.7
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 9.2e-06 55.1 191 23.6
PGR142G0005 Punica granatum HOM05D003483 ORTHO05D004101 9.2e-06 55.1 216 22.7
SalBow6G5065 Salvia bowleyana HOM05D003483 ORTHO05D004101 9.2e-06 55.1 244 23.0
SalBow6G7249 Salvia bowleyana HOM05D003483 ORTHO05D004101 9.2e-06 55.1 244 23.0
unitig_699.g19861 Utricularia gibba HOM05D003483 ORTHO05D004101 9.2e-06 55.1 198 23.2


User provided reference genes

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