Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 5.9e-53 210.7 114 100.0
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.9e-46 189.1 114 86.0
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.9e-46 189.1 114 86.0
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 1.6e-45 186.0 113 85.0
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 1.6e-45 186.0 114 85.1
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 2.0e-45 185.7 114 86.0
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 2.7e-45 185.3 114 85.1
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 2.7e-45 185.3 114 84.2
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 2.7e-45 185.3 114 85.1
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 2.7e-45 185.3 114 88.6
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 6.0e-45 184.1 111 86.5
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 7.8e-45 183.7 114 85.1
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 7.8e-45 183.7 114 86.0
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 7.8e-45 183.7 114 84.2
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 7.8e-45 183.7 114 84.2
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 1.0e-44 183.3 114 84.2
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 1.3e-44 183.0 114 83.3
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 2.3e-44 182.2 114 86.0
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 2.3e-44 182.2 114 86.0
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 2.3e-44 182.2 114 83.3
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.3e-44 182.2 114 85.1
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 3.0e-44 181.8 114 82.5
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 3.9e-44 181.4 114 81.6
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 3.9e-44 181.4 114 82.5
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 3.9e-44 181.4 114 82.5
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 3.9e-44 181.4 114 83.3
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 5.0e-44 181.0 112 85.7
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 5.0e-44 181.0 114 84.2
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 5.0e-44 181.0 114 82.5
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 6.6e-44 180.6 114 86.0
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 6.6e-44 180.6 114 83.3
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 6.6e-44 180.6 112 84.8
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 8.6e-44 180.3 114 81.6
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 1.1e-43 179.9 114 83.3
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.5e-43 179.5 114 83.3
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 1.5e-43 179.5 115 84.3
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 1.5e-43 179.5 114 80.7
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.9e-43 179.1 114 82.5
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 1.9e-43 179.1 114 80.7
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 2.5e-43 178.7 114 82.5
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 4.3e-43 177.9 112 82.1
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 4.3e-43 177.9 115 83.5
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 4.3e-43 177.9 115 83.5
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.3e-43 177.9 115 83.5
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.3e-43 177.9 115 83.5
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 4.3e-43 177.9 115 83.5
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 9.5e-43 176.8 110 83.6
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 1.2e-42 176.4 108 86.1
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.2e-42 176.4 110 80.9
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.2e-42 176.4 112 82.1
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 2.8e-42 175.3 114 83.3
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 2.8e-42 175.3 112 80.4
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 4.7e-42 174.5 112 81.2
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 78.9
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 4.7e-42 174.5 115 80.9
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 6.2e-42 174.1 108 85.2
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 6.2e-42 174.1 114 78.9
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 6.2e-42 174.1 114 79.8
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 6.2e-42 174.1 112 79.5
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 8.1e-42 173.7 114 79.8
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 8.1e-42 173.7 114 79.8
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 8.1e-42 173.7 114 78.9
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 1.1e-41 173.3 115 80.9
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 1.4e-41 172.9 114 78.9
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 1.4e-41 172.9 114 79.8
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 1.8e-41 172.6 115 80.9
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 1.8e-41 172.6 115 80.9
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 2.3e-41 172.2 110 80.0
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 78.1
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 2.3e-41 172.2 115 80.0
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 81.6
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 3.1e-41 171.8 112 81.2
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 79.8
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 5.2e-41 171.0 112 77.7
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 6.8e-41 170.6 104 87.5
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 6.8e-41 170.6 114 79.8
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 8.9e-41 170.2 112 75.9
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 8.9e-41 170.2 114 78.1
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 1.2e-40 169.9 114 80.7
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 1.2e-40 169.9 114 80.7
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 1.5e-40 169.5 112 75.9
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 2.0e-40 169.1 113 78.8
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 2.6e-40 168.7 112 75.9
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 3.4e-40 168.3 115 80.0
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 3.4e-40 168.3 114 76.3
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 4.4e-40 167.9 113 77.0
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 5.8e-40 167.5 114 76.3
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 5.8e-40 167.5 142 67.6
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 1.7e-39 166.0 114 78.1
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 1.7e-39 166.0 109 77.1
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 1.7e-39 166.0 106 81.1
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 1.7e-39 166.0 114 78.9
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 3.7e-39 164.9 114 78.1
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 3.7e-39 164.9 114 78.1
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 3.7e-39 164.9 114 78.1
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 4.9e-39 164.5 115 78.3
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 6.4e-39 164.1 114 76.3
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 8.3e-39 163.7 114 77.2
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 1.9e-38 162.5 114 77.2
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.2e-38 161.8 146 65.8
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 4.1e-38 161.4 114 76.3
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 9.2e-38 160.2 114 73.7
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 1.6e-37 159.5 109 76.1
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.6e-37 159.5 145 62.1
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 4.6e-37 157.9 114 74.6
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 4.6e-37 157.9 114 74.6
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 6.0e-37 157.5 109 74.3
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 1.3e-36 156.4 104 78.8
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 3.0e-36 155.2 112 73.2
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 6.6e-36 154.1 114 72.8
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 2.3e-33 145.6 80 93.8
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 6.8e-33 144.1 92 81.5
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.5e-32 142.9 114 66.7
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 2.0e-32 142.5 84 88.1
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 4.4e-32 141.4 80 90.0
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 5.8e-32 141.0 115 69.6
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.7e-31 139.4 114 65.8
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 3.8e-31 138.3 107 66.4
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 3.8e-31 138.3 79 89.9
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 1.1e-30 136.7 100 74.0
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 1.9e-30 136.0 77 90.9
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 7.1e-30 134.0 94 77.7
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 4.6e-29 131.3 83 81.9
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 4.6e-29 131.3 83 81.9
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 9.6e-27 123.6 77 84.4
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 4.7e-26 121.3 72 86.1
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 6.9e-25 117.5 65 92.3
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 6.4e-23 110.9 77 72.7
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 8.4e-23 110.5 112 53.6
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 1.2e-21 106.7 69 79.7
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 1.6e-21 106.3 106 51.9
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 2.1e-21 105.9 77 72.7
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 7.8e-21 104.0 77 72.7
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 1.0e-20 103.6 104 58.7
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.0e-20 103.6 63 85.7
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 3.0e-20 102.1 114 53.5
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 3.0e-20 102.1 65 81.5
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 3.3e-19 98.6 109 49.5
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 7.3e-19 97.4 102 52.9
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 6.9e-17 90.9 100 55.0
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 2.2e-15 85.9 106 48.1
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 2.9e-15 85.5 95 53.7
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 3.8e-15 85.1 51 88.2
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 8.4e-15 84.0 76 55.3
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.1e-14 83.6 57 78.9
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 4.2e-14 81.6 106 46.2
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 1.2e-13 80.1 43 93.0
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.6e-13 79.7 45 88.9
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 4.6e-13 78.2 50 82.0
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 7.9e-13 77.4 104 50.0
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 1.0e-12 77.0 43 88.4
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 3.0e-12 75.5 43 86.0
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 6.7e-12 74.3 51 78.4
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 1.9e-11 72.8 55 70.9
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 7.4e-11 70.9 62 58.1
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 9.6e-11 70.5 99 49.5
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 9.6e-11 70.5 93 51.6
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 9.6e-11 70.5 106 39.6
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 1.3e-10 70.1 60 61.7
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 4.8e-10 68.2 92 46.7
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 4.0e-09 65.1 97 47.4
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.6e-08 62.4 59 50.8


User provided reference genes

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