Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 3.6e-135 485.0 251 100.0
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 5.2e-110 401.4 245 80.8
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 4.4e-109 398.3 248 80.6
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 3.4e-93 345.5 242 69.8
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 2.4e-78 296.2 247 63.6
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 2.4e-78 296.2 212 70.3
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 3.2e-75 285.8 203 68.0
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 5.5e-75 285.0 205 67.3
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 1.2e-74 283.9 204 69.1
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 1.6e-74 283.5 212 65.6
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 2.1e-74 283.1 249 57.8
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 3.5e-74 282.3 212 65.1
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 4.6e-74 282.0 211 64.9
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 1.0e-73 280.8 200 67.0
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 3.0e-73 279.3 217 63.6
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 5.1e-73 278.5 203 68.5
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 5.1e-73 278.5 203 68.5
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 6.7e-73 278.1 202 66.3
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 1.1e-72 277.3 204 65.7
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 2.5e-72 276.2 204 66.2
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 5.7e-72 275.0 213 64.3
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 1.3e-71 273.9 202 66.3
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 1.6e-71 273.5 213 65.3
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 2.1e-71 273.1 202 64.9
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 1.1e-70 270.8 200 67.0
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 1.8e-70 270.0 214 61.2
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 1.8e-70 270.0 213 62.4
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 2.4e-70 269.6 215 62.8
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 5.3e-70 268.5 214 60.3
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 5.3e-70 268.5 214 60.3
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 5.3e-70 268.5 207 62.3
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 5.3e-70 268.5 203 63.1
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 5.3e-70 268.5 200 64.5
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 5.3e-70 268.5 213 62.4
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 5.3e-70 268.5 212 60.8
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 6.9e-70 268.1 202 63.4
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 6.9e-70 268.1 199 62.8
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 6.9e-70 268.1 208 62.0
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 9.0e-70 267.7 203 60.6
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 9.0e-70 267.7 213 62.4
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 1.5e-69 266.9 200 66.0
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 2.0e-69 266.5 213 62.0
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 2.0e-69 266.5 210 58.6
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 2.6e-69 266.2 213 59.6
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 2.6e-69 266.2 250 54.0
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 4.5e-69 265.4 213 60.1
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 5.8e-69 265.0 198 63.1
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 3.8e-68 262.3 213 62.9
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 6.5e-68 261.5 209 58.9
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 1.4e-67 260.4 201 63.7
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.4e-67 260.4 201 63.7
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 2.5e-67 259.6 201 63.7
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 3.2e-67 259.2 201 63.2
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 3.2e-67 259.2 201 63.2
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 5.5e-67 258.5 200 63.5
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 5.5e-67 258.5 203 63.1
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 9.3e-67 257.7 203 63.5
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 1.2e-66 257.3 266 52.3
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 1.2e-66 257.3 200 62.5
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 2.1e-66 256.5 196 61.2
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 2.1e-66 256.5 200 61.5
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 2.1e-66 256.5 218 59.2
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 6.1e-66 255.0 203 62.6
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 6.1e-66 255.0 199 63.8
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 6.1e-66 255.0 211 58.3
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 1.5e-64 250.4 207 55.6
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 1.5e-64 250.4 257 52.9
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 1.9e-64 250.0 251 52.6
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 2.5e-64 249.6 200 60.5
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 3.3e-64 249.2 212 55.7
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 4.3e-64 248.8 215 54.9
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 7.4e-64 248.1 212 55.2
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 7.4e-64 248.1 212 55.2
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 7.4e-64 248.1 212 55.2
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 1.3e-63 247.3 201 62.2
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 2.2e-63 246.5 250 52.8
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 2.8e-63 246.1 203 60.6
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 4.8e-63 245.4 212 54.2
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 6.3e-63 245.0 211 54.0
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 8.2e-63 244.6 211 54.0
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 1.1e-62 244.2 211 53.6
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 1.1e-62 244.2 203 55.7
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 1.1e-62 244.2 212 53.8
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 1.8e-62 243.4 200 56.5
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 1.8e-62 243.4 212 53.8
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 2.4e-62 243.0 212 53.8
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 2.4e-62 243.0 212 53.8
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 4.1e-62 242.3 212 53.8
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 9.0e-62 241.1 203 58.1
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 1.5e-61 240.4 203 55.2
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 1.5e-61 240.4 204 54.9
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 1.1e-56 224.2 185 60.0
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 4.3e-56 222.2 172 65.7
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 9.4e-51 204.5 199 53.3
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 9.4e-51 204.5 199 53.3
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 1.5e-48 197.2 170 54.7
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 2.6e-48 196.4 202 51.5
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 3.1e-46 189.5 164 59.1
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 4.1e-46 189.1 164 59.1
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 9.1e-46 188.0 213 48.8
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 2.9e-44 183.0 151 59.6
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 1.6e-42 177.2 133 63.9
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 1.4e-41 174.1 215 41.9
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 2.0e-40 170.2 137 61.3
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 4.8e-39 165.6 135 60.0
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 5.9e-37 158.7 132 59.8
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 5.0e-36 155.6 101 70.3
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 8.8e-33 144.8 105 62.9
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 4.4e-32 142.5 101 67.3
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 1.6e-29 134.0 218 37.6
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 2.9e-28 129.8 100 62.0
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 1.3e-23 114.4 90 61.1
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 2.8e-23 113.2 101 55.4
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 2.3e-17 93.6 97 54.6
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 2.3e-17 93.6 97 54.6
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 2.3e-17 93.6 97 54.6
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 2.3e-17 93.6 97 54.6
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 2.3e-17 93.6 97 54.6
arahy.Tifrunner.gnm1.ann1.3YR680 Arachis hypogaea HOM05D001733 ORTHO05D001882 5.7e-16 89.0 71 57.7
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 7.0e-14 82.0 141 37.6
arahy.Tifrunner.gnm1.ann1.BIR89S Arachis hypogaea HOM05D001903 ORTHO05D001847 1.6e-10 70.9 76 50.0
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 1.6e-10 70.9 51 58.8
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 2.1e-10 70.5 51 58.8
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 2.1e-10 70.5 51 58.8
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 2.8e-10 70.1 55 54.5
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 2.8e-10 70.1 52 57.7
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 6.2e-10 68.9 51 56.9
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 2.4e-06 57.0 48 56.2
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 2.4e-06 57.0 33 66.7
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 3.2e-06 56.6 33 66.7


User provided reference genes

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