Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03600 Beta vulgaris HOM05D000470 ORTHO05D088594 1.0e-38 162.9 83 100.0
EL10Ac2g03598 Beta vulgaris HOM05D000470 ORTHO05D089220 7.0e-11 70.5 50 74.0
Sc13g0004950 Simmondsia chinensis HOM05D000470 ORTHO05D000348 1.9e-08 62.4 60 58.3
Ah.06g187510 Amaranthus hybridus HOM05D000470 ORTHO05D000348 4.2e-08 61.2 48 70.8
EL10Ac2g02479 Beta vulgaris HOM05D000470 ORTHO05D000348 4.2e-08 61.2 48 70.8
EL10Ac4g08479 Beta vulgaris HOM05D000470 ORTHO05D000348 4.2e-08 61.2 48 70.8
GSVIVG01018104001 Vitis vinifera HOM05D000470 ORTHO05D000348 4.2e-08 61.2 48 68.8
ATR0665G250 Amborella trichopoda HOM05D000470 ORTHO05D000348 5.5e-08 60.8 51 66.7
arahy.Tifrunner.gnm1.ann1.2ZN6A3 Arachis hypogaea HOM05D000470 ORTHO05D000348 5.5e-08 60.8 48 68.8
arahy.Tifrunner.gnm1.ann1.WBNY1K Arachis hypogaea HOM05D000470 ORTHO05D000348 5.5e-08 60.8 48 68.8
Glyma.20G210300 Glycine max HOM05D000470 ORTHO05D000348 5.5e-08 60.8 48 68.8
Lj5g0007360 Lotus japonicus HOM05D000470 ORTHO05D000348 5.5e-08 60.8 48 68.8
Lalb_Chr06g0169021 Lupinus albus HOM05D000470 ORTHO05D000348 5.5e-08 60.8 48 68.8
Medtr1g076210 Medicago truncatula HOM05D000470 ORTHO05D000348 5.5e-08 60.8 48 68.8
Medtr1g093280 Medicago truncatula HOM05D000470 ORTHO05D000348 5.5e-08 60.8 48 68.8
Phvul.007G084900 Phaseolus vulgaris HOM05D000470 ORTHO05D000348 5.5e-08 60.8 48 68.8
Psat6g139360 Pisum sativum HOM05D000470 ORTHO05D000348 5.5e-08 60.8 48 68.8
TAR365G0227 Trochodendron aralioides HOM05D000470 ORTHO05D000348 5.5e-08 60.8 48 68.8
TAR365G1131 Trochodendron aralioides HOM05D000470 ORTHO05D000348 5.5e-08 60.8 48 68.8
VMungo0720G2319 Vigna mungo HOM05D000470 ORTHO05D000348 5.5e-08 60.8 48 68.8
VMungo0720G2562 Vigna mungo HOM05D000470 ORTHO05D000348 5.5e-08 60.8 48 68.8
Hma1.2p1_0893F.1_g233590 Hydrangea macrophylla HOM05D000470 ORTHO05D000348 7.2e-08 60.5 51 64.7
Potri.010G077900 Populus trichocarpa HOM05D000470 ORTHO05D000348 7.2e-08 60.5 48 70.8
Hund24919 Selenicereus undatus HOM05D000470 ORTHO05D000348 7.2e-08 60.5 48 70.8
Atru.chr4.2267 Acer truncatum HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
EL10Ac2g03597 Beta vulgaris HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
CSS0010923 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
CANSAT78G1971 Cannabis sativa HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
Carub.0008s2536 Capsella rubella HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
CARHR278530 Cardamine hirsuta HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
Cpa.g.sc14.77 Carica papaya HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
AUR62003660 Chenopodium quinoa HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
AUR62017969 Chenopodium quinoa HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
AUR62019715 Chenopodium quinoa HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
AUR62043745 Chenopodium quinoa HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
Ciclev10005128m.g Citrus clementina HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
Dinv44620 Davidia involucrata HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
Eucgr.F02186 Eucalyptus grandis HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
Eucgr.H00212 Eucalyptus grandis HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
Eucgr.H00214 Eucalyptus grandis HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
Thhalv10004289m.g Eutrema salsugineum HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
FvH4_4g02330 Fragaria vesca HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
Lalb_Chr02g0150071 Lupinus albus HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
Manes.03G169600 Manihot esculenta HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
Phvul.003G138304 Phaseolus vulgaris HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
Potri.008G161400 Populus trichocarpa HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
PGR142G0024 Punica granatum HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
Rhsim06G0124800 Rhododendron simsii HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
RcHm_v2.0_Chr4g0389661 Rosa chinensis HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
Sabra10G0065200 Salix brachista HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
Sp2g27630 Schrenkiella parvula HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
THA.LOC104799566 Tarenaya hassleriana HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
THA.LOC104819320 Tarenaya hassleriana HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
TWI09G0792 Tripterygium wilfordii HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
TWI53G0990 Tripterygium wilfordii HOM05D000470 ORTHO05D000348 9.4e-08 60.1 48 68.8
CiPaw.02G117000 Carya illinoinensis HOM05D000470 ORTHO05D000348 1.2e-07 59.7 48 68.8
Ca_09873_v3 Cicer arietinum L. HOM05D000470 ORTHO05D000348 1.2e-07 59.7 48 66.7
Manes.15G036500 Manihot esculenta HOM05D000470 ORTHO05D000348 1.2e-07 59.7 48 68.8
PSO017G7262 Papaver somniferum HOM05D000470 ORTHO05D000348 1.2e-07 59.7 48 68.8
PSO170G5112 Papaver somniferum HOM05D000470 ORTHO05D000348 1.2e-07 59.7 48 68.8
Rhsim04G0193400 Rhododendron simsii HOM05D000470 ORTHO05D000348 1.2e-07 59.7 43 74.4
SEGI_40324 Sequoiadendron giganteum HOM05D000470 ORTHO05D000348 1.2e-07 59.7 48 68.8
TPR.G2851 Trifolium pratense HOM05D000470 ORTHO05D000348 1.2e-07 59.7 48 66.7
TAR636G0368 Trochodendron aralioides HOM05D000470 ORTHO05D000348 1.2e-07 59.7 48 68.8
vmacro08405 Vaccinium macrocarpon HOM05D000470 ORTHO05D000348 1.2e-07 59.7 44 70.5
EL10Ac2g03599 Beta vulgaris HOM05D000470 ORTHO05D088704 1.6e-07 59.3 42 71.4
Ca_27084_v3 Cicer arietinum L. HOM05D000470 ORTHO05D000348 1.6e-07 59.3 43 72.1
DCAR_024207 Daucus carota HOM05D000470 ORTHO05D000348 1.6e-07 59.3 48 68.8
Dinv14081 Davidia involucrata HOM05D000470 ORTHO05D000348 1.6e-07 59.3 43 72.1
Glyma.10G180200 Glycine max HOM05D000470 ORTHO05D000348 1.6e-07 59.3 48 66.7
MBI04_g33204_MAGBIO Magnolia biondii HOM05D000470 ORTHO05D000348 1.6e-07 59.3 48 68.8
Prupe.1G027800 Prunus persica HOM05D000470 ORTHO05D000348 1.6e-07 59.3 48 66.7
HPP92_021279 Vanilla planifolia HOM05D000470 ORTHO05D000348 1.6e-07 59.3 52 65.4
HPP92_021293 Vanilla planifolia HOM05D000470 ORTHO05D000348 1.6e-07 59.3 52 65.4
Actinidia04487 Actinidia chinensis HOM05D000470 ORTHO05D000348 2.1e-07 58.9 48 66.7
CSS0008811 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 2.1e-07 58.9 48 66.7
Cfa011467 Carpinus fangiana HOM05D000470 ORTHO05D000348 2.1e-07 58.9 48 68.8
Eucgr.H00210 Eucalyptus grandis HOM05D000470 ORTHO05D000348 2.1e-07 58.9 48 66.7
MD13G1205200 Malus domestica HOM05D000470 ORTHO05D000348 2.1e-07 58.9 48 66.7
QL06p015266 Quercus lobata HOM05D000470 ORTHO05D000348 2.1e-07 58.9 48 68.8
Sabra08G0123200 Salix brachista HOM05D000470 ORTHO05D000348 2.1e-07 58.9 48 66.7
CiPaw.01G192100 Carya illinoinensis HOM05D000470 ORTHO05D000348 2.7e-07 58.5 48 66.7
Hma1.2p1_1193F.1_g265560 Hydrangea macrophylla HOM05D000470 ORTHO05D000348 2.7e-07 58.5 48 66.7
MD16G1207000 Malus domestica HOM05D000470 ORTHO05D000348 2.7e-07 58.5 48 66.7
RhsimUnG0183100 Rhododendron simsii HOM05D000470 ORTHO05D009609 2.7e-07 58.5 43 72.1
Sed0027938 Sechium edule HOM05D000470 ORTHO05D000348 2.7e-07 58.5 48 66.7
Sc19g0003830 Simmondsia chinensis HOM05D000470 ORTHO05D000348 2.7e-07 58.5 48 66.7
AL8G41950 Arabidopsis lyrata HOM05D000470 ORTHO05D000348 3.6e-07 58.2 48 66.7
AT5G64560 Arabidopsis thaliana HOM05D000470 ORTHO05D000348 3.6e-07 58.2 48 66.7
CDE06G1874 Ceratophyllum demersum HOM05D000470 ORTHO05D000348 3.6e-07 58.2 48 66.7
DCAR_017061 Daucus carota HOM05D000470 ORTHO05D000348 3.6e-07 58.2 48 66.7
Nn1g02580 Nelumbo nucifera HOM05D000470 ORTHO05D000348 3.6e-07 58.2 48 68.8
TAR362G1177 Trochodendron aralioides HOM05D000470 ORTHO05D000348 3.6e-07 58.2 48 66.7
BcaB04g19974 Brassica carinata HOM05D000470 ORTHO05D000348 4.7e-07 57.8 48 66.7
BcaC04g23311 Brassica carinata HOM05D000470 ORTHO05D000348 4.7e-07 57.8 48 66.7
A09p08710 Brassica napus HOM05D000470 ORTHO05D000348 4.7e-07 57.8 48 66.7
C09p09840 Brassica napus HOM05D000470 ORTHO05D000348 4.7e-07 57.8 48 66.7
BolC9t53892H Brassica oleracea HOM05D000470 ORTHO05D000348 4.7e-07 57.8 48 66.7
BraA09t36519Z Brassica rapa HOM05D000470 ORTHO05D000348 4.7e-07 57.8 48 66.7
Cfa008392 Carpinus fangiana HOM05D000470 ORTHO05D000348 4.7e-07 57.8 48 66.7
ClCG06G006640 Citrullus lanatus HOM05D000470 ORTHO05D000348 4.7e-07 57.8 48 64.6
Haze_11277 Corylus avellana HOM05D000470 ORTHO05D000348 4.7e-07 57.8 48 66.7
Haze_24053 Corylus avellana HOM05D000470 ORTHO05D000348 4.7e-07 57.8 48 66.7
CsaV3_2G013190 Cucumis sativus L. HOM05D000470 ORTHO05D000348 4.7e-07 57.8 48 64.6
FAN12G1303 Fragaria x ananassa HOM05D000470 ORTHO05D000348 4.7e-07 57.8 48 66.7
Rhsim05G0160000 Rhododendron simsii HOM05D011344 ORTHO05D016379 4.7e-07 57.8 44 68.2
Sed0024346 Sechium edule HOM05D000470 ORTHO05D000348 4.7e-07 57.8 48 64.6
Aa31LG1G17370 Aethionema arabicum HOM05D000446 ORTHO05D000321 6.1e-07 57.4 48 66.7
COL.COLO4_15776 Corchorus olitorius HOM05D000470 ORTHO05D000348 6.1e-07 57.4 48 66.7
Gohir.A10G123900 Gossypium hirsutum HOM05D000470 ORTHO05D000348 6.1e-07 57.4 48 66.7
Gohir.D10G152400 Gossypium hirsutum HOM05D000470 ORTHO05D000348 6.1e-07 57.4 48 66.7
Gorai.011G170800 Gossypium raimondii HOM05D000470 ORTHO05D000348 6.1e-07 57.4 48 66.7
SMO117G0243 Selaginella moellendorffii HOM05D000470 ORTHO05D000348 6.1e-07 57.4 51 62.7
TAR365G0668 Trochodendron aralioides HOM05D000470 ORTHO05D000348 6.1e-07 57.4 48 64.6
TAR365G1208 Trochodendron aralioides HOM05D000470 ORTHO05D000348 6.1e-07 57.4 48 64.6
BcaB05g21535 Brassica carinata HOM05D000470 ORTHO05D000348 8.0e-07 57.0 48 66.7
C02p63450 Brassica napus HOM05D000470 ORTHO05D000348 8.0e-07 57.0 48 66.7
BolC2t12412H Brassica oleracea HOM05D000470 ORTHO05D000348 8.0e-07 57.0 48 66.7
CSS0009510 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 8.0e-07 57.0 48 64.6
Duzib151G0945 Durio zibethinus HOM05D000470 ORTHO05D000348 8.0e-07 57.0 48 66.7
Thecc.04G245100 Theobroma cacao HOM05D000470 ORTHO05D000348 8.0e-07 57.0 48 66.7
Zm00001eb056820 Zea mays HOM05D000470 ORTHO05D000348 8.0e-07 57.0 48 66.7
AT5G09690 Arabidopsis thaliana HOM05D000470 ORTHO05D000348 1.0e-06 56.6 48 66.7
BcaC01g06911 Brassica carinata HOM05D000470 ORTHO05D000348 1.0e-06 56.6 48 64.6
BcaC03g18429 Brassica carinata HOM05D000470 ORTHO05D000348 1.0e-06 56.6 48 64.6
A06p31290 Brassica napus HOM05D000470 ORTHO05D000348 1.0e-06 56.6 48 64.6
C03p61680 Brassica napus HOM05D000470 ORTHO05D000348 1.0e-06 56.6 48 64.6
BolC3t18431H Brassica oleracea HOM05D000470 ORTHO05D000348 1.0e-06 56.6 48 64.6
BraA06t26068Z Brassica rapa HOM05D000470 ORTHO05D000348 1.0e-06 56.6 48 64.6
CSS0036819 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 1.0e-06 56.6 43 69.8
Lj3A718T90 Lonicera japonica HOM05D000470 ORTHO05D000348 1.0e-06 56.6 48 64.6
Lj3A787T45 Lonicera japonica HOM05D000470 ORTHO05D000348 1.0e-06 56.6 48 64.6
Manes.15G036400 Manihot esculenta HOM05D000470 ORTHO05D000348 1.0e-06 56.6 48 64.6
Aqoxy6G02409 Aquilegia oxysepala HOM05D000470 ORTHO05D000348 1.4e-06 56.2 48 64.6
AL6G20120 Arabidopsis lyrata HOM05D000470 ORTHO05D000348 1.4e-06 56.2 48 66.7
CSS0039269 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 1.4e-06 56.2 43 69.8
FAN22G2335 Fragaria x ananassa HOM05D000470 ORTHO05D000348 1.4e-06 56.2 48 66.7
Rhsim01G0269000 Rhododendron simsii HOM05D001069 ORTHO05D001549 1.4e-06 56.2 44 70.5
TPR.G22643 Trifolium pratense HOM05D000470 ORTHO05D000348 1.4e-06 56.2 48 64.6
FAN17G2099 Fragaria x ananassa HOM05D000470 ORTHO05D000348 1.8e-06 55.8 48 64.6
Gohir.A08G061600 Gossypium hirsutum HOM05D000470 ORTHO05D000348 1.8e-06 55.8 48 66.7
Gohir.D08G070700 Gossypium hirsutum HOM05D000470 ORTHO05D000348 1.8e-06 55.8 48 66.7
Gorai.004G074400 Gossypium raimondii HOM05D000470 ORTHO05D000348 1.8e-06 55.8 48 66.7
Hund04623 Selenicereus undatus HOM05D000470 ORTHO05D000348 1.8e-06 55.8 48 64.6
TPR.G21200 Trifolium pratense HOM05D000470 ORTHO05D000348 1.8e-06 55.8 43 69.8
A02p00120 Brassica napus HOM05D000470 ORTHO05D000348 2.3e-06 55.5 48 64.6
A02p43360 Brassica napus HOM05D000470 ORTHO05D000348 2.3e-06 55.5 48 64.6
BraA02t04997Z Brassica rapa HOM05D000470 ORTHO05D000348 2.3e-06 55.5 48 64.6
BraA02t09262Z Brassica rapa HOM05D000470 ORTHO05D000348 2.3e-06 55.5 48 64.6
Thhalv10013809m.g Eutrema salsugineum HOM05D000470 ORTHO05D000348 2.3e-06 55.5 48 64.6
Os03g0742400 Oryza sativa ssp. japonica HOM05D000470 ORTHO05D000348 2.3e-06 55.5 47 66.0
Sp6g33680 Schrenkiella parvula HOM05D000470 ORTHO05D000348 2.3e-06 55.5 52 59.6
arahy.Tifrunner.gnm1.ann1.FQRE9J Arachis hypogaea HOM05D000470 ORTHO05D000348 3.0e-06 55.1 48 64.6
BcaC03g13271 Brassica carinata HOM05D000470 ORTHO05D000348 3.0e-06 55.1 48 64.6
C02p04010 Brassica napus HOM05D000470 ORTHO05D000348 3.0e-06 55.1 48 64.6
BolC2t06363H Brassica oleracea HOM05D000470 ORTHO05D000348 3.0e-06 55.1 48 64.6
CSS0021092 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 3.0e-06 55.1 43 67.4
Dinv22472 Davidia involucrata HOM05D000470 ORTHO05D000348 3.0e-06 55.1 48 64.6
Lalb_Chr25g0290081 Lupinus albus HOM05D000470 ORTHO05D000348 3.0e-06 55.1 48 64.6
MBI04_g37850_MAGBIO Magnolia biondii HOM05D000470 ORTHO05D000348 3.0e-06 55.1 43 69.8
Pp3c2_34940 Physcomitrium patens HOM05D000470 ORTHO05D000348 3.0e-06 55.1 49 59.2
GSVIVG01000745001 Vitis vinifera HOM05D000470 ORTHO05D000348 3.0e-06 55.1 48 64.6
BcaB05g21536 Brassica carinata HOM05D000470 ORTHO05D000348 4.0e-06 54.7 48 64.6
BcaC03g13272 Brassica carinata HOM05D000470 ORTHO05D000348 4.0e-06 54.7 48 64.6
C02p04020 Brassica napus HOM05D000470 ORTHO05D000348 4.0e-06 54.7 48 64.6
BolC2t06364H Brassica oleracea HOM05D000470 ORTHO05D000348 4.0e-06 54.7 48 64.6
DCAR_018454 Daucus carota HOM05D000470 ORTHO05D000348 4.0e-06 54.7 48 62.5
MBI04_g44869_MAGBIO Magnolia biondii HOM05D000470 ORTHO05D000348 4.0e-06 54.7 43 69.8
HPP92_015884 Vanilla planifolia HOM05D000470 ORTHO05D000348 4.0e-06 54.7 47 63.8
Gohir.D01G022300 Gossypium hirsutum HOM05D000470 ORTHO05D000348 5.2e-06 54.3 47 66.0
Gorai.002G024800 Gossypium raimondii HOM05D000470 ORTHO05D000348 5.2e-06 54.3 47 66.0
TPR.G18946 Trifolium pratense HOM05D000470 ORTHO05D000348 5.2e-06 54.3 41 70.7
TPR.G39450 Trifolium pratense HOM05D000470 ORTHO05D000348 5.2e-06 54.3 47 63.8
Actinidia24944 Actinidia chinensis HOM05D000470 ORTHO05D000348 6.8e-06 53.9 48 64.6
Cc01_g18770 Coffea canephora HOM05D000470 ORTHO05D000348 6.8e-06 53.9 48 64.6
ECA233G2738 Erigeron canadensis HOM05D000470 ORTHO05D000348 6.8e-06 53.9 48 64.6
HanXRQChr09g0262601 Helianthus annuus HOM05D000470 ORTHO05D000348 6.8e-06 53.9 48 64.6
HanXRQChr12g0382131 Helianthus annuus HOM05D000470 ORTHO05D000348 6.8e-06 53.9 48 64.6
HanXRQChr15g0468651 Helianthus annuus HOM05D000470 ORTHO05D000348 6.8e-06 53.9 48 64.6
Lsat_1_v5_gn_5_66821 Lactuca sativa HOM05D000470 ORTHO05D000348 6.8e-06 53.9 48 64.6
Manes.05G085100 Manihot esculenta HOM05D000470 ORTHO05D000348 6.8e-06 53.9 48 64.6
Actinidia40092 Actinidia chinensis HOM05D000470 ORTHO05D000348 8.8e-06 53.5 48 62.5
CSS0039513 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 8.8e-06 53.5 48 64.6
Ca_08649_v3 Cicer arietinum L. HOM05D000470 ORTHO05D000348 8.8e-06 53.5 48 62.5
Lj1g0026844 Lotus japonicus HOM05D000470 ORTHO05D000348 8.8e-06 53.5 48 62.5
Medtr7g096170 Medicago truncatula HOM05D000470 ORTHO05D000348 8.8e-06 53.5 48 62.5
unitig_0.g2730 Utricularia gibba HOM05D000470 ORTHO05D000348 8.8e-06 53.5 48 60.4
VMungo1215G2156 Vigna mungo HOM05D001218 ORTHO05D012808 8.8e-06 53.5 54 53.7


User provided reference genes

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