Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03598 Beta vulgaris HOM05D000470 ORTHO05D089220 2.3e-28 128.3 67 100.0
EL10Ac2g03600 Beta vulgaris HOM05D000470 ORTHO05D088594 1.3e-10 69.3 50 74.0
EL10Ac2g03599 Beta vulgaris HOM05D000470 ORTHO05D088704 8.2e-10 66.6 38 86.8
DCAR_017061 Daucus carota HOM05D000470 ORTHO05D000348 2.6e-08 61.6 65 58.5
Rhsim05G0160000 Rhododendron simsii HOM05D011344 ORTHO05D016379 1.0e-07 59.7 36 83.3
arahy.Tifrunner.gnm1.ann1.2ZN6A3 Arachis hypogaea HOM05D000470 ORTHO05D000348 1.7e-07 58.9 56 60.7
arahy.Tifrunner.gnm1.ann1.WBNY1K Arachis hypogaea HOM05D000470 ORTHO05D000348 1.7e-07 58.9 56 60.7
Sp2g27630 Schrenkiella parvula HOM05D000470 ORTHO05D000348 2.2e-07 58.5 65 58.5
VMungo0720G2562 Vigna mungo HOM05D000470 ORTHO05D000348 2.2e-07 58.5 56 60.7
AUR62003660 Chenopodium quinoa HOM05D000470 ORTHO05D000348 2.9e-07 58.2 64 54.7
AUR62017969 Chenopodium quinoa HOM05D000470 ORTHO05D000348 2.9e-07 58.2 64 54.7
AUR62019715 Chenopodium quinoa HOM05D000470 ORTHO05D000348 2.9e-07 58.2 64 54.7
AUR62043745 Chenopodium quinoa HOM05D000470 ORTHO05D000348 2.9e-07 58.2 64 54.7
Ah.06g187510 Amaranthus hybridus HOM05D000470 ORTHO05D000348 3.8e-07 57.8 64 56.2
EL10Ac2g03597 Beta vulgaris HOM05D000470 ORTHO05D000348 3.8e-07 57.8 40 77.5
Hund24919 Selenicereus undatus HOM05D000470 ORTHO05D000348 3.8e-07 57.8 64 56.2
GSVIVG01018104001 Vitis vinifera HOM05D000470 ORTHO05D000348 3.8e-07 57.8 40 75.0
Glyma.20G210300 Glycine max HOM05D000470 ORTHO05D000348 4.9e-07 57.4 40 75.0
Lj5g0007360 Lotus japonicus HOM05D000470 ORTHO05D000348 4.9e-07 57.4 40 75.0
Lalb_Chr02g0150071 Lupinus albus HOM05D000470 ORTHO05D000348 4.9e-07 57.4 62 59.7
Lalb_Chr06g0169021 Lupinus albus HOM05D000470 ORTHO05D000348 4.9e-07 57.4 40 75.0
Medtr1g076210 Medicago truncatula HOM05D000470 ORTHO05D000348 4.9e-07 57.4 40 75.0
Medtr1g093280 Medicago truncatula HOM05D000470 ORTHO05D000348 4.9e-07 57.4 40 75.0
Phvul.007G084900 Phaseolus vulgaris HOM05D000470 ORTHO05D000348 4.9e-07 57.4 40 75.0
Psat6g139360 Pisum sativum HOM05D000470 ORTHO05D000348 4.9e-07 57.4 40 75.0
RhsimUnG0183100 Rhododendron simsii HOM05D000470 ORTHO05D009609 4.9e-07 57.4 35 82.9
VMungo0720G2319 Vigna mungo HOM05D000470 ORTHO05D000348 4.9e-07 57.4 40 75.0
EL10Ac2g02479 Beta vulgaris HOM05D000470 ORTHO05D000348 6.5e-07 57.0 64 54.7
EL10Ac4g08479 Beta vulgaris HOM05D000470 ORTHO05D000348 6.5e-07 57.0 64 54.7
Eucgr.F02186 Eucalyptus grandis HOM05D000470 ORTHO05D000348 6.5e-07 57.0 51 66.7
Eucgr.H00212 Eucalyptus grandis HOM05D000470 ORTHO05D000348 6.5e-07 57.0 51 66.7
Eucgr.H00214 Eucalyptus grandis HOM05D000470 ORTHO05D000348 6.5e-07 57.0 51 66.7
Rhsim06G0124800 Rhododendron simsii HOM05D000470 ORTHO05D000348 6.5e-07 57.0 43 72.1
Atru.chr4.2267 Acer truncatum HOM05D000470 ORTHO05D000348 8.4e-07 56.6 64 54.7
CSS0010923 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
Carub.0008s2536 Capsella rubella HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
CARHR278530 Cardamine hirsuta HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
Cpa.g.sc14.77 Carica papaya HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
Ciclev10005128m.g Citrus clementina HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
Dinv44620 Davidia involucrata HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
FvH4_4g02330 Fragaria vesca HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
Hma1.2p1_0893F.1_g233590 Hydrangea macrophylla HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
MD16G1207000 Malus domestica HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
Manes.03G169600 Manihot esculenta HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
Potri.008G161400 Populus trichocarpa HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
Potri.010G077900 Populus trichocarpa HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
PGR142G0024 Punica granatum HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
RcHm_v2.0_Chr4g0389661 Rosa chinensis HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
Sabra10G0065200 Salix brachista HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
THA.LOC104799566 Tarenaya hassleriana HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
TWI09G0792 Tripterygium wilfordii HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
TWI53G0990 Tripterygium wilfordii HOM05D000470 ORTHO05D000348 8.4e-07 56.6 40 75.0
BcaC04g23311 Brassica carinata HOM05D000470 ORTHO05D000348 1.1e-06 56.2 65 56.9
A09p08710 Brassica napus HOM05D000470 ORTHO05D000348 1.1e-06 56.2 65 56.9
C09p09840 Brassica napus HOM05D000470 ORTHO05D000348 1.1e-06 56.2 65 56.9
BolC9t53892H Brassica oleracea HOM05D000470 ORTHO05D000348 1.1e-06 56.2 65 56.9
BraA09t36519Z Brassica rapa HOM05D000470 ORTHO05D000348 1.1e-06 56.2 65 56.9
CANSAT78G1971 Cannabis sativa HOM05D000470 ORTHO05D000348 1.1e-06 56.2 68 52.9
CiPaw.02G117000 Carya illinoinensis HOM05D000470 ORTHO05D000348 1.1e-06 56.2 40 75.0
Thhalv10004289m.g Eutrema salsugineum HOM05D000470 ORTHO05D000348 1.1e-06 56.2 66 54.5
Manes.15G036500 Manihot esculenta HOM05D000470 ORTHO05D000348 1.1e-06 56.2 40 75.0
TPR.G2851 Trifolium pratense HOM05D000470 ORTHO05D000348 1.1e-06 56.2 40 72.5
vmacro08405 Vaccinium macrocarpon HOM05D000470 ORTHO05D000348 1.1e-06 56.2 36 77.8
Eucgr.H00210 Eucalyptus grandis HOM05D000470 ORTHO05D000348 1.4e-06 55.8 51 64.7
Glyma.10G180200 Glycine max HOM05D000470 ORTHO05D000348 1.4e-06 55.8 40 72.5
Phvul.003G138304 Phaseolus vulgaris HOM05D000470 ORTHO05D000348 1.4e-06 55.8 40 72.5
Rhsim04G0193400 Rhododendron simsii HOM05D000470 ORTHO05D000348 1.4e-06 55.8 35 80.0
RcHm_v2.0_Chr4g0389711 Rosa chinensis HOM05D000470 ORTHO05D000348 1.4e-06 55.8 51 66.7
SEGI_40324 Sequoiadendron giganteum HOM05D000470 ORTHO05D000348 1.4e-06 55.8 56 58.9
THA.LOC104819320 Tarenaya hassleriana HOM05D000470 ORTHO05D000348 1.4e-06 55.8 65 56.9
Actinidia04487 Actinidia chinensis HOM05D000470 ORTHO05D000348 1.9e-06 55.5 40 72.5
Aa31LG1G17370 Aethionema arabicum HOM05D000446 ORTHO05D000321 1.9e-06 55.5 66 53.0
CsaV3_2G013190 Cucumis sativus L. HOM05D000470 ORTHO05D000348 1.9e-06 55.5 40 72.5
DCAR_024207 Daucus carota HOM05D000470 ORTHO05D000348 1.9e-06 55.5 40 72.5
MD13G1205200 Malus domestica HOM05D000470 ORTHO05D000348 1.9e-06 55.5 40 72.5
Sabra08G0123200 Salix brachista HOM05D000470 ORTHO05D000348 1.9e-06 55.5 40 72.5
TAR365G0227 Trochodendron aralioides HOM05D000470 ORTHO05D000348 1.9e-06 55.5 40 72.5
BcaB04g19974 Brassica carinata HOM05D000470 ORTHO05D000348 2.5e-06 55.1 65 55.4
BcaC01g06911 Brassica carinata HOM05D000470 ORTHO05D000348 2.5e-06 55.1 65 56.9
C03p61680 Brassica napus HOM05D000470 ORTHO05D000348 2.5e-06 55.1 65 56.9
BolC3t18431H Brassica oleracea HOM05D000470 ORTHO05D000348 2.5e-06 55.1 65 56.9
CiPaw.01G192100 Carya illinoinensis HOM05D000470 ORTHO05D000348 2.5e-06 55.1 40 72.5
Hma1.2p1_1193F.1_g265560 Hydrangea macrophylla HOM05D000470 ORTHO05D000348 2.5e-06 55.1 65 55.4
AL8G41950 Arabidopsis lyrata HOM05D000470 ORTHO05D000348 3.2e-06 54.7 70 50.0
AT5G64560 Arabidopsis thaliana HOM05D000470 ORTHO05D000348 3.2e-06 54.7 40 72.5
BcaC03g18429 Brassica carinata HOM05D000470 ORTHO05D000348 3.2e-06 54.7 66 56.1
ClCG06G006640 Citrullus lanatus HOM05D000470 ORTHO05D000348 3.2e-06 54.7 64 53.1
Dinv14081 Davidia involucrata HOM05D000470 ORTHO05D000348 3.2e-06 54.7 60 60.0
Sed0024346 Sechium edule HOM05D000470 ORTHO05D000348 3.2e-06 54.7 64 50.0
Sc13g0004950 Simmondsia chinensis HOM05D000470 ORTHO05D000348 3.2e-06 54.7 40 72.5
Sc19g0003830 Simmondsia chinensis HOM05D000470 ORTHO05D000348 3.2e-06 54.7 40 72.5
Cfa008392 Carpinus fangiana HOM05D000470 ORTHO05D000348 4.2e-06 54.3 40 72.5
Cfa011467 Carpinus fangiana HOM05D000470 ORTHO05D000348 4.2e-06 54.3 40 72.5
Haze_11277 Corylus avellana HOM05D000470 ORTHO05D000348 4.2e-06 54.3 40 72.5
Haze_24053 Corylus avellana HOM05D000470 ORTHO05D000348 4.2e-06 54.3 40 72.5
FAN12G1303 Fragaria x ananassa HOM05D000470 ORTHO05D000348 4.2e-06 54.3 40 72.5
Gorai.002G024800 Gossypium raimondii HOM05D000470 ORTHO05D000348 4.2e-06 54.3 65 55.4
PSO017G7262 Papaver somniferum HOM05D000470 ORTHO05D000348 4.2e-06 54.3 40 72.5
PSO170G5112 Papaver somniferum HOM05D000470 ORTHO05D000348 4.2e-06 54.3 40 72.5
Prupe.1G027800 Prunus persica HOM05D000470 ORTHO05D000348 4.2e-06 54.3 40 70.0
QL06p015266 Quercus lobata HOM05D000470 ORTHO05D000348 4.2e-06 54.3 40 72.5
TAR365G1131 Trochodendron aralioides HOM05D000470 ORTHO05D000348 4.2e-06 54.3 65 49.2
ATR0665G250 Amborella trichopoda HOM05D000470 ORTHO05D000348 5.5e-06 53.9 65 53.8
CANSAT01G2466 Cannabis sativa HOM05D000470 ORTHO05D000348 5.5e-06 53.9 60 55.0
COL.COLO4_15776 Corchorus olitorius HOM05D000470 ORTHO05D000348 5.5e-06 53.9 40 72.5
Gohir.A10G123900 Gossypium hirsutum HOM05D000470 ORTHO05D000348 5.5e-06 53.9 40 72.5
Gohir.D01G022300 Gossypium hirsutum HOM05D000470 ORTHO05D000348 5.5e-06 53.9 65 53.8
Gohir.D10G152400 Gossypium hirsutum HOM05D000470 ORTHO05D000348 5.5e-06 53.9 40 72.5
Gorai.011G170800 Gossypium raimondii HOM05D000470 ORTHO05D000348 5.5e-06 53.9 40 72.5
MBI04_g33204_MAGBIO Magnolia biondii HOM05D000470 ORTHO05D000348 5.5e-06 53.9 40 72.5
Sed0027938 Sechium edule HOM05D000470 ORTHO05D000348 5.5e-06 53.9 65 50.8
TPR.G22643 Trifolium pratense HOM05D000470 ORTHO05D000348 5.5e-06 53.9 57 56.1
C02p63450 Brassica napus HOM05D000470 ORTHO05D000348 7.1e-06 53.5 65 55.4
BolC2t12412H Brassica oleracea HOM05D000470 ORTHO05D000348 7.1e-06 53.5 65 55.4
CSS0008811 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 7.1e-06 53.5 40 70.0
CSS0009510 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 7.1e-06 53.5 63 52.4
Duzib151G0945 Durio zibethinus HOM05D000470 ORTHO05D000348 7.1e-06 53.5 40 72.5
Pp3c2_34940 Physcomitrium patens HOM05D000470 ORTHO05D000348 7.1e-06 53.5 47 63.8
Thecc.04G245100 Theobroma cacao HOM05D000470 ORTHO05D000348 7.1e-06 53.5 40 72.5
TPR.G39450 Trifolium pratense HOM05D000470 ORTHO05D000348 7.1e-06 53.5 40 70.0
TAR636G0368 Trochodendron aralioides HOM05D000470 ORTHO05D000348 7.1e-06 53.5 51 62.7
BcaB05g21535 Brassica carinata HOM05D000470 ORTHO05D000348 9.3e-06 53.1 40 70.0
A02p43360 Brassica napus HOM05D000470 ORTHO05D000348 9.3e-06 53.1 65 55.4
A06p31290 Brassica napus HOM05D000470 ORTHO05D000348 9.3e-06 53.1 65 55.4
BraA02t09262Z Brassica rapa HOM05D000470 ORTHO05D000348 9.3e-06 53.1 65 55.4
BraA06t26068Z Brassica rapa HOM05D000470 ORTHO05D000348 9.3e-06 53.1 65 55.4
Ca_09873_v3 Cicer arietinum L. HOM05D000470 ORTHO05D000348 9.3e-06 53.1 40 70.0
Manes.15G036400 Manihot esculenta HOM05D000470 ORTHO05D000348 9.3e-06 53.1 40 70.0
Os03g0742400 Oryza sativa ssp. japonica HOM05D000470 ORTHO05D000348 9.3e-06 53.1 40 70.0
SMO117G0243 Selaginella moellendorffii HOM05D000470 ORTHO05D000348 9.3e-06 53.1 40 70.0
Hund04623 Selenicereus undatus HOM05D000470 ORTHO05D000348 9.3e-06 53.1 53 56.6
HPP92_015884 Vanilla planifolia HOM05D000470 ORTHO05D000348 9.3e-06 53.1 66 53.0
HPP92_021279 Vanilla planifolia HOM05D000470 ORTHO05D000348 9.3e-06 53.1 40 70.0


User provided reference genes

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