Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03543 Beta vulgaris HOM05D004167 ORTHO05D005012 3.9e-114 414.8 215 100.0
EL10Ac2g04752 Beta vulgaris HOM05D004167 ORTHO05D005012 8.6e-61 237.7 199 68.3
Ah.16g102290 Amaranthus hybridus HOM05D004167 ORTHO05D005012 5.0e-53 211.8 199 61.3
AUR62039381 Chenopodium quinoa HOM05D004167 ORTHO05D005012 1.6e-51 206.8 200 59.5
Ca_07311_v3 Cicer arietinum L. HOM05D004167 ORTHO05D005012 1.5e-49 200.3 200 59.5
MD07G1198100 Malus domestica HOM05D004167 ORTHO05D005012 2.6e-49 199.5 198 58.1
Hund13759 Selenicereus undatus HOM05D004167 ORTHO05D005012 2.6e-49 199.5 199 59.3
GSVIVG01016551001 Vitis vinifera HOM05D004167 ORTHO05D005012 2.6e-49 199.5 200 57.5
Medtr7g026260 Medicago truncatula HOM05D004167 ORTHO05D005012 4.4e-49 198.7 199 58.8
CSS0037407 Camellia sinensis var. sinensis HOM05D004167 ORTHO05D005012 5.8e-49 198.4 199 57.8
ClCG09G019760 Citrullus lanatus HOM05D004167 ORTHO05D005012 7.5e-49 198.0 199 55.3
Thecc.10G042500 Theobroma cacao HOM05D004167 ORTHO05D005012 9.8e-49 197.6 200 57.5
Actinidia13047 Actinidia chinensis HOM05D004167 ORTHO05D005012 1.3e-48 197.2 199 58.3
Actinidia13878 Actinidia chinensis HOM05D004167 ORTHO05D005012 1.3e-48 197.2 199 58.3
Gohir.A05G301600 Gossypium hirsutum HOM05D004167 ORTHO05D005012 1.3e-48 197.2 200 57.5
Lj1g0019937 Lotus japonicus HOM05D004167 ORTHO05D005012 1.3e-48 197.2 200 58.5
MD01G1133900 Malus domestica HOM05D004167 ORTHO05D005012 1.3e-48 197.2 198 57.1
CiPaw.02G183800 Carya illinoinensis HOM05D004167 ORTHO05D005012 1.7e-48 196.8 200 58.0
Dinv03048 Davidia involucrata HOM05D004167 ORTHO05D005012 1.7e-48 196.8 200 57.5
Migut.F01510 Erythranthe guttata HOM05D004167 ORTHO05D005012 1.7e-48 196.8 199 58.3
Gorai.009G319400 Gossypium raimondii HOM05D004167 ORTHO05D005012 1.7e-48 196.8 200 57.5
CiPaw.01G287300 Carya illinoinensis HOM05D004167 ORTHO05D005012 2.2e-48 196.4 200 57.0
Gohir.D10G228300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 2.2e-48 196.4 199 57.3
SalBow6G7174 Salvia bowleyana HOM05D004167 ORTHO05D005012 2.2e-48 196.4 200 57.0
Gorai.011G260700 Gossypium raimondii HOM05D004167 ORTHO05D005012 2.9e-48 196.1 199 57.3
Lalb_Chr10g0091651 Lupinus albus HOM05D004167 ORTHO05D005012 4.9e-48 195.3 200 57.0
Oeu064381.1 Olea europaea HOM05D004167 ORTHO05D005012 4.9e-48 195.3 200 57.0
Oeu064382.1 Olea europaea HOM05D004167 ORTHO05D005012 4.9e-48 195.3 200 57.0
RcHm_v2.0_Chr1g0367061 Rosa chinensis HOM05D004167 ORTHO05D005012 4.9e-48 195.3 200 56.5
TPR.G1356 Trifolium pratense HOM05D004167 ORTHO05D005012 4.9e-48 195.3 199 57.8
FvH4_7g22450 Fragaria vesca HOM05D004167 ORTHO05D005012 6.4e-48 194.9 199 57.3
FAN01G0242 Fragaria x ananassa HOM05D004167 ORTHO05D005012 6.4e-48 194.9 199 57.3
FAN06G2439 Fragaria x ananassa HOM05D004167 ORTHO05D005012 6.4e-48 194.9 199 57.3
FAN06G3201 Fragaria x ananassa HOM05D004167 ORTHO05D005012 6.4e-48 194.9 199 57.3
HanXRQChr14g0457931 Helianthus annuus HOM05D004167 ORTHO05D005012 6.4e-48 194.9 199 57.3
TAR633G1670 Trochodendron aralioides HOM05D004167 ORTHO05D005012 6.4e-48 194.9 200 55.5
Cfa001475 Carpinus fangiana HOM05D004167 ORTHO05D005012 8.3e-48 194.5 200 57.5
FAN01G1831 Fragaria x ananassa HOM05D004167 ORTHO05D005012 8.3e-48 194.5 199 56.8
Rhsim09G0165800 Rhododendron simsii HOM05D004167 ORTHO05D005012 8.3e-48 194.5 199 57.8
ECA238G2661 Erigeron canadensis HOM05D004167 ORTHO05D005012 1.1e-47 194.1 199 57.3
Gohir.D05G301300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 1.4e-47 193.7 200 57.0
TWI15G0568 Tripterygium wilfordii HOM05D004167 ORTHO05D005012 1.4e-47 193.7 200 56.5
CANSAT56G0736 Cannabis sativa HOM05D004167 ORTHO05D005012 2.4e-47 193.0 200 55.0
Lj8A84T90 Lonicera japonica HOM05D004167 ORTHO05D005012 2.4e-47 193.0 207 55.6
Potri.008G055700 Populus trichocarpa HOM05D004167 ORTHO05D005012 3.2e-47 192.6 200 57.0
Ciclev10032053m.g Citrus clementina HOM05D004167 ORTHO05D005012 4.1e-47 192.2 202 56.4
FAN03G2888 Fragaria x ananassa HOM05D004167 ORTHO05D005012 5.4e-47 191.8 199 57.3
FAN10G4113 Fragaria x ananassa HOM05D004167 ORTHO05D005012 5.4e-47 191.8 199 57.3
Potri.010G204000 Populus trichocarpa HOM05D004167 ORTHO05D005012 5.4e-47 191.8 200 57.5
Prupe.2G235200 Prunus persica HOM05D004167 ORTHO05D005012 5.4e-47 191.8 199 56.8
QL08p059807 Quercus lobata HOM05D004167 ORTHO05D005012 5.4e-47 191.8 200 56.0
Sc11g0007950 Simmondsia chinensis HOM05D004167 ORTHO05D005012 5.4e-47 191.8 200 58.0
MELO3C021632.2 Cucumis melo HOM05D004167 ORTHO05D005012 7.0e-47 191.4 199 54.8
Hund16089 Selenicereus undatus HOM05D004167 ORTHO05D005012 7.0e-47 191.4 203 56.2
DCAR_011694 Daucus carota HOM05D004167 ORTHO05D005012 9.2e-47 191.0 199 56.3
PSO210G3999 Papaver somniferum HOM05D004167 ORTHO05D005012 9.2e-47 191.0 199 54.8
THA.LOC104824275 Tarenaya hassleriana HOM05D004167 ORTHO05D005012 1.2e-46 190.7 200 56.5
Nn5g26919 Nelumbo nucifera HOM05D004167 ORTHO05D005012 1.6e-46 190.3 200 56.0
AT2G39630 Arabidopsis thaliana HOM05D004167 ORTHO05D005012 2.0e-46 189.9 200 56.5
arahy.Tifrunner.gnm1.ann1.A8V5RI Arachis hypogaea HOM05D004167 ORTHO05D005012 2.0e-46 189.9 204 53.9
arahy.Tifrunner.gnm1.ann1.TM884Y Arachis hypogaea HOM05D004167 ORTHO05D005012 2.0e-46 189.9 204 53.9
Duzib114G0485 Durio zibethinus HOM05D004167 ORTHO05D005012 2.0e-46 189.9 200 55.5
Atru.chr12.475 Acer truncatum HOM05D004167 ORTHO05D005012 2.7e-46 189.5 200 55.5
CsaV3_5G026660 Cucumis sativus L. HOM05D004167 ORTHO05D005012 2.7e-46 189.5 199 53.8
PSO210G2827 Papaver somniferum HOM05D004167 ORTHO05D005012 2.7e-46 189.5 199 54.3
Atru.chr12.453 Acer truncatum HOM05D004167 ORTHO05D005012 4.6e-46 188.7 200 55.5
AL4G37040 Arabidopsis lyrata HOM05D004167 ORTHO05D005012 4.6e-46 188.7 207 55.6
MSTRG.303 Avicennia marina HOM05D004167 ORTHO05D005012 4.6e-46 188.7 199 54.8
Lsat_1_v5_gn_9_65421 Lactuca sativa HOM05D004167 ORTHO05D005012 4.6e-46 188.7 199 55.8
SGA_v2.0_scaffold108G31010 Striga asiatica HOM05D004167 ORTHO05D005012 4.6e-46 188.7 204 56.9
Dinv26013 Davidia involucrata HOM05D004167 ORTHO05D005012 7.8e-46 188.0 200 55.0
PGR142G3800 Punica granatum HOM05D004167 ORTHO05D005012 7.8e-46 188.0 200 54.5
Cpa.g.sc1.403 Carica papaya HOM05D004167 ORTHO05D005012 1.0e-45 187.6 208 54.8
Manes.07G116100 Manihot esculenta HOM05D004167 ORTHO05D005012 1.0e-45 187.6 200 56.5
Duzib106G0246 Durio zibethinus HOM05D004167 ORTHO05D005012 1.7e-45 186.8 200 55.5
Glyma.18G291100 Glycine max HOM05D004167 ORTHO05D005012 1.7e-45 186.8 204 55.9
VMungo1383G2822 Vigna mungo HOM05D004167 ORTHO05D005012 1.7e-45 186.8 204 55.9
ClCG07G003290 Citrullus lanatus HOM05D004167 ORTHO05D005012 2.3e-45 186.4 199 54.8
Carub.0004s2167 Capsella rubella HOM05D004167 ORTHO05D005012 3.0e-45 186.0 200 55.5
Nitab4.5_0006489g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 3.0e-45 186.0 201 55.2
Nitab4.5_0010256g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 3.0e-45 186.0 200 55.5
unitig_899.g15067 Utricularia gibba HOM05D004167 ORTHO05D005012 3.9e-45 185.7 199 54.3
Thhalv10016901m.g Eutrema salsugineum HOM05D004167 ORTHO05D005012 5.0e-45 185.3 200 56.0
Sp4g21890 Schrenkiella parvula HOM05D004167 ORTHO05D005012 5.0e-45 185.3 200 55.5
Aa31LG5G20010 Aethionema arabicum HOM05D004167 ORTHO05D005012 6.6e-45 184.9 201 56.2
Peaxi162Scf00015g01117 Petunia axillaris HOM05D004167 ORTHO05D005012 6.6e-45 184.9 200 55.5
A05p06810 Brassica napus HOM05D004167 ORTHO05D005012 8.6e-45 184.5 200 55.5
BraA03t11449Z Brassica rapa HOM05D004167 ORTHO05D005012 8.6e-45 184.5 200 56.5
Cc02_g07870 Coffea canephora HOM05D004167 ORTHO05D005012 8.6e-45 184.5 200 53.5
Eucgr.G02933 Eucalyptus grandis HOM05D004167 ORTHO05D005012 8.6e-45 184.5 200 55.0
Nn2g10367 Nelumbo nucifera HOM05D004167 ORTHO05D005012 8.6e-45 184.5 200 55.5
C03p26250 Brassica napus HOM05D004167 ORTHO05D005012 1.1e-44 184.1 200 56.5
BolC3t15010H Brassica oleracea HOM05D004167 ORTHO05D005012 1.1e-44 184.1 200 56.5
ECA232G2013 Erigeron canadensis HOM05D004167 ORTHO05D005012 1.1e-44 184.1 199 55.3
Phvul.008G010800 Phaseolus vulgaris HOM05D004167 ORTHO05D005012 1.1e-44 184.1 204 54.4
Sed0007402 Sechium edule HOM05D004167 ORTHO05D005012 1.1e-44 184.1 199 53.3
CAN.G1013.26 Capsicum annuum HOM05D004167 ORTHO05D005012 1.5e-44 183.7 200 53.5
Lsat_1_v5_gn_2_119101 Lactuca sativa HOM05D004167 ORTHO05D005012 1.5e-44 183.7 199 53.3
Solyc05g054460.3 Solanum lycopersicum HOM05D004167 ORTHO05D005012 1.5e-44 183.7 200 53.5
Sopen05g032950 Solanum pennellii HOM05D004167 ORTHO05D005012 1.5e-44 183.7 200 53.5
PGSC0003DMG400023531 Solanum tuberosum HOM05D004167 ORTHO05D005012 1.5e-44 183.7 200 53.5
Sed0027549 Sechium edule HOM05D004167 ORTHO05D005012 1.9e-44 183.3 199 55.8
BcaB02g09101 Brassica carinata HOM05D004167 ORTHO05D005012 3.3e-44 182.6 200 55.0
Glyma.02G091700 Glycine max HOM05D004167 ORTHO05D005012 3.3e-44 182.6 204 54.4
MBI14_g20108_MAGBIO Magnolia biondii HOM05D004167 ORTHO05D005012 4.3e-44 182.2 200 53.5
BraA05t19647Z Brassica rapa HOM05D004167 ORTHO05D005012 5.6e-44 181.8 200 54.5
TAR623G0075 Trochodendron aralioides HOM05D004167 ORTHO05D005012 5.6e-44 181.8 200 54.5
Zm00001eb062720 Zea mays HOM05D004167 ORTHO05D005012 5.6e-44 181.8 199 51.8
CsaV3_5G008030 Cucumis sativus L. HOM05D004167 ORTHO05D005012 7.3e-44 181.4 199 54.3
Sabra10G0157600 Salix brachista HOM05D004167 ORTHO05D005012 7.3e-44 181.4 147 68.0
Gohir.A10G218700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 9.5e-44 181.0 190 56.3
BcaC02g12089 Brassica carinata HOM05D004167 ORTHO05D005012 1.2e-43 180.6 200 54.5
C04p07990 Brassica napus HOM05D004167 ORTHO05D005012 1.2e-43 180.6 200 54.5
BolC4t22416H Brassica oleracea HOM05D004167 ORTHO05D005012 1.2e-43 180.6 200 54.5
Os03g0821800 Oryza sativa ssp. japonica HOM05D004167 ORTHO05D005012 1.6e-43 180.3 199 50.3
MELO3C023850.2 Cucumis melo HOM05D004167 ORTHO05D005012 4.7e-43 178.7 199 52.8
Aqoxy5G03379 Aquilegia oxysepala HOM05D004167 ORTHO05D005012 1.4e-42 177.2 199 52.3
Manes.10G030400 Manihot esculenta HOM05D004167 ORTHO05D005012 1.2e-41 174.1 146 63.7
Sabra08G0040300 Salix brachista HOM05D004167 ORTHO05D005012 9.8e-41 171.0 163 60.1
HPP92_020200 Vanilla planifolia HOM05D004167 ORTHO05D005012 1.1e-39 167.5 202 49.0
ATR0559G365 Amborella trichopoda HOM05D004167 ORTHO05D005012 2.4e-39 166.4 200 49.0
EL10Ac8g19589 Beta vulgaris HOM05D004167 ORTHO05D005012 5.4e-39 165.2 204 52.0
SEGI_18748 Sequoiadendron giganteum HOM05D004167 ORTHO05D005012 5.4e-39 165.2 208 46.6
CDE09G1012 Ceratophyllum demersum HOM05D004167 ORTHO05D005012 1.7e-37 160.2 199 47.7
EL10Ac3g06649 Beta vulgaris HOM05D004167 ORTHO05D005012 1.5e-36 157.1 117 75.2
AUR62012082 Chenopodium quinoa HOM05D004167 ORTHO05D005012 5.6e-36 155.2 156 57.7
Gohir.A09G052700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 1.8e-34 150.2 178 49.4
SMO367G0757 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 1.5e-33 147.1 198 46.0
Pp3c6_19470 Physcomitrium patens HOM05D004167 ORTHO05D005012 2.6e-33 146.4 199 44.2
Mapoly0005s0180 Marchantia polymorpha HOM05D004167 ORTHO05D005012 3.4e-33 146.0 199 43.7
TAR381G1570 Trochodendron aralioides HOM05D004167 ORTHO05D005012 1.4e-31 140.6 195 46.2
CARHR134470 Cardamine hirsuta HOM05D004167 ORTHO05D005012 7.1e-31 138.3 155 53.5
AagrBONN_evm.TU.Sc2ySwM_344.1330 Anthoceros agrestis HOM05D004167 ORTHO05D005012 1.2e-30 137.5 200 41.5
AagrBONN_evm.TU.Sc2ySwM_117.3937 Anthoceros agrestis HOM05D004167 ORTHO05D005012 1.6e-30 137.1 200 41.5
BcaC01g05486 Brassica carinata HOM05D004167 ORTHO05D005012 3.5e-30 136.0 154 54.5
vmacro10234 Vaccinium macrocarpon HOM05D004167 ORTHO05D005012 3.9e-29 132.5 120 62.5
Pp3c3_37810 Physcomitrium patens HOM05D004167 ORTHO05D005012 6.6e-29 131.7 203 42.4
Psat3g163360 Pisum sativum HOM05D004167 ORTHO05D005012 8.6e-29 131.3 120 62.5
BraA02t07167Z Brassica rapa HOM05D004167 ORTHO05D005012 4.3e-28 129.0 153 52.9
Sed0025003 Sechium edule HOM05D004167 ORTHO05D005012 2.8e-27 126.3 122 59.0
TAR627G1156 Trochodendron aralioides HOM05D004167 ORTHO05D005012 8.1e-27 124.8 191 41.9
Hma1.2p1_0683F.1_g202820 Hydrangea macrophylla HOM05D004167 ORTHO05D005012 9.9e-25 117.9 147 49.0
SHI22567 Sapria himalayana HOM05D004167 ORTHO05D005012 1.4e-23 114.0 154 44.8
PSO079G0067 Papaver somniferum HOM05D004167 ORTHO05D005012 5.4e-23 112.1 114 57.0
Cre16.g652850 Chlamydomonas reinhardtii HOM05D004167 ORTHO05D005012 3.3e-20 102.8 199 34.7
EL10Ac5g11485 Beta vulgaris HOM05D004167 ORTHO05D089766 4.5e-17 92.4 144 46.5
Nitab4.5_0000065g0040 Nicotiana tabacum HOM05D004167 ORTHO05D005012 9.9e-17 91.3 111 49.5
arahy.Tifrunner.gnm1.ann1.I9KCKB Arachis hypogaea HOM05D001644 ORTHO05D001641 1.2e-14 84.3 140 44.3
AUR62014580 Chenopodium quinoa HOM05D004167 ORTHO05D005012 6.0e-14 82.0 135 42.2
Haze_27280 Corylus avellana HOM05D004167 ORTHO05D005012 1.3e-13 80.9 146 32.2
EL10Ac5g11410 Beta vulgaris HOM05D004167 ORTHO05D005012 6.7e-13 78.6 101 49.5
PRCOL_00006983 Prasinoderma coloniale HOM05D004167 ORTHO05D005012 1.1e-12 77.8 203 29.6
CBR_g12000 Chara braunii HOM05D004167 ORTHO05D005012 2.5e-12 76.6 74 52.7
vmacro10235 Vaccinium macrocarpon HOM05D004167 ORTHO05D005012 1.4e-10 70.9 81 50.6
SMO142G0075 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 4.5e-09 65.9 194 29.4
SMO142G0035 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 5.5e-07 58.9 150 26.7


User provided reference genes

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