Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 3.0e-148 528.5 266 100.0
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.1e-137 493.4 266 93.6
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 3.6e-133 478.4 293 85.0
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 1.8e-129 466.1 267 89.9
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 5.3e-129 464.5 290 83.4
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 2.6e-123 445.7 268 85.1
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 2.2e-122 442.6 267 84.6
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 8.2e-122 440.7 267 84.6
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 5.3e-121 438.0 260 86.2
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 4.5e-120 434.9 268 82.8
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.3e-119 433.3 267 82.4
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.3e-119 433.3 263 84.8
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 1.7e-119 433.0 262 83.6
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 2.2e-119 432.6 267 82.4
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 2.2e-119 432.6 268 82.1
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 2.2e-119 432.6 262 83.6
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 2.9e-119 432.2 267 83.5
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.8e-119 431.8 262 83.6
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 3.8e-119 431.8 267 82.0
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 8.5e-119 430.6 268 83.6
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 1.1e-118 430.3 268 82.5
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 1.9e-118 429.5 268 82.8
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 3.2e-118 428.7 267 82.8
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 4.2e-118 428.3 268 81.7
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 4.2e-118 428.3 268 83.2
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 5.5e-118 427.9 262 84.4
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 5.5e-118 427.9 261 83.5
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 7.2e-118 427.6 269 82.5
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 7.2e-118 427.6 262 83.6
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 9.4e-118 427.2 260 82.3
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 1.2e-117 426.8 262 82.1
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.2e-117 426.8 262 82.8
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.2e-117 426.8 261 82.8
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 1.6e-117 426.4 268 82.1
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.6e-117 426.4 268 81.0
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 2.1e-117 426.0 268 82.1
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.6e-117 425.2 268 81.3
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 3.6e-117 425.2 268 82.1
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 6.1e-117 424.5 263 82.5
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 1.4e-116 423.3 261 82.4
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 1.8e-116 422.9 268 80.6
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.0e-116 422.2 268 81.0
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 5.2e-116 421.4 261 81.2
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 6.8e-116 421.0 269 81.0
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 8.8e-116 420.6 267 80.9
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 8.8e-116 420.6 268 80.2
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 8.8e-116 420.6 262 82.8
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.2e-115 420.2 261 82.0
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 5.7e-115 417.9 269 80.3
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 5.7e-115 417.9 267 81.6
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.7e-114 416.4 268 82.1
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 1.7e-114 416.4 275 80.4
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.8e-114 415.6 262 80.5
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.7e-114 415.2 252 82.9
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 4.8e-114 414.8 275 79.3
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 4.8e-114 414.8 262 80.9
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 4.8e-114 414.8 261 82.4
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 6.3e-114 414.5 268 79.9
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.1e-113 413.7 263 78.3
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.8e-113 412.9 261 80.1
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.8e-113 412.9 257 82.1
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 3.1e-113 412.1 267 79.4
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 4.1e-113 411.8 268 81.3
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 4.1e-113 411.8 268 78.7
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 7.0e-113 411.0 261 79.7
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 7.0e-113 411.0 261 80.8
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 7.0e-113 411.0 267 78.7
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 9.1e-113 410.6 267 80.1
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 1.2e-112 410.2 253 83.0
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.6e-112 409.8 261 80.5
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.6e-112 409.8 267 80.1
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 1.6e-112 409.8 267 79.8
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.0e-112 409.5 261 80.1
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 2.7e-112 409.1 261 79.3
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 3.5e-112 408.7 267 79.0
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 3.5e-112 408.7 261 79.7
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 2.2e-111 406.0 265 79.2
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.8e-111 405.2 267 78.3
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 5.0e-111 404.8 251 81.7
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 8.5e-111 404.1 267 79.8
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.1e-110 403.7 261 77.8
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 1.5e-110 403.3 269 78.8
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.1e-109 399.4 262 77.1
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 6.1e-109 397.9 308 68.8
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 6.1e-109 397.9 252 80.2
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.8e-108 396.4 262 78.2
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 5.2e-108 394.8 261 78.5
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 6.8e-108 394.4 268 75.7
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 1.5e-107 393.3 267 75.3
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 1.5e-107 393.3 255 78.8
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 2.6e-107 392.5 260 78.1
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 3.4e-107 392.1 261 77.0
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 3.7e-106 388.7 267 74.5
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 1.1e-105 387.1 262 76.3
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.1e-105 387.1 261 77.4
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 3.1e-105 385.6 251 78.1
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 5.4e-105 384.8 267 73.8
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 1.2e-104 383.6 274 74.5
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.6e-104 383.3 271 73.1
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 3.5e-104 382.1 320 65.6
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 4.5e-104 381.7 260 76.5
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 4.5e-104 381.7 283 73.1
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 8.6e-103 377.5 252 77.8
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 1.9e-102 376.3 239 80.8
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 5.6e-102 374.8 252 77.4
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 9.5e-102 374.0 259 72.6
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 9.5e-102 374.0 259 72.6
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 4.7e-101 371.7 257 75.9
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.8e-100 369.8 268 71.6
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.5e-99 366.7 266 71.1
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 4.4e-99 365.2 263 70.7
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.3e-98 363.6 263 71.1
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 1.4e-97 360.1 264 70.8
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.4e-97 359.4 263 69.6
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.4e-97 359.4 261 72.0
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 3.2e-97 359.0 263 70.0
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 3.2e-97 359.0 266 72.9
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 4.1e-97 358.6 263 69.2
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 4.1e-97 358.6 263 69.2
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 1.6e-96 356.7 267 68.9
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.6e-96 356.7 261 70.1
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 4.6e-96 355.1 276 70.7
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 5.9e-96 354.8 263 69.2
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 7.8e-96 354.4 263 69.6
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 7.8e-96 354.4 263 69.6
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 7.8e-96 354.4 259 69.9
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 1.0e-95 354.0 264 69.7
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.7e-95 353.2 260 69.6
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 3.0e-95 352.4 263 69.2
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.0e-95 352.4 227 80.2
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 6.6e-95 351.3 264 69.3
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 2.5e-94 349.4 263 69.2
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 2.5e-94 349.4 259 70.3
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 2.8e-93 345.9 263 69.2
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 3.6e-93 345.5 236 76.7
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 1.1e-92 344.0 282 65.6
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.1e-92 344.0 252 70.2
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 7.5e-91 337.8 263 68.8
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 4.9e-90 335.1 262 66.4
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 6.0e-88 328.2 265 63.8
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 1.7e-87 326.6 207 82.1
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 2.3e-87 326.2 198 85.4
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 2.1e-85 319.7 263 63.1
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 1.4e-84 317.0 264 63.3
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 4.4e-83 312.0 198 80.8
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.7e-82 310.1 241 67.2
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 4.9e-82 308.5 264 61.7
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 3.2e-81 305.8 264 61.4
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 3.5e-80 302.4 263 60.5
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.1e-78 297.4 191 79.6
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.1e-71 271.9 144 91.0
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.6e-59 233.0 168 72.0
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 8.4e-42 174.9 217 49.3
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 1.1e-41 174.5 188 53.2
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.8e-39 167.2 239 43.1
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 4.3e-38 162.5 205 45.4
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.6e-32 144.1 122 68.9
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 4.6e-32 142.5 117 65.0
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.1e-31 139.0 74 94.6
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.1e-30 137.9 93 73.1
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 6.9e-28 128.6 209 41.6
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 3.8e-26 122.9 76 80.3
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.4e-23 114.4 91 64.8
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 4.1e-20 102.8 180 39.4
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 2.5e-17 93.6 117 41.9
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 3.1e-12 76.6 40 82.5
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.6e-11 74.3 40 80.0
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.2e-10 70.5 40 77.5
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 6.5e-10 68.9 120 41.7
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 3.2e-09 66.6 138 34.1
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 5.5e-09 65.9 43 62.8
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 5.2e-07 59.3 86 33.7
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 8.8e-07 58.5 32 90.6


User provided reference genes

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