Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 6.9e-284 979.9 487 100.0
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 4.9e-221 771.2 494 79.1
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 9.2e-220 766.9 452 82.5
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.5e-217 759.6 464 80.0
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 5.6e-209 731.1 488 74.4
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 3.6e-208 728.4 493 75.3
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 8.9e-207 723.8 476 74.4
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 8.9e-207 723.8 487 76.2
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 1.5e-206 723.0 476 74.2
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 5.8e-206 721.1 487 74.3
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 7.6e-206 720.7 492 73.6
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 9.9e-206 720.3 490 72.7
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 2.2e-205 719.2 469 75.9
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 6.4e-205 717.6 494 72.9
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 1.1e-204 716.8 489 72.8
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 3.2e-204 715.3 471 73.9
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 4.1e-204 714.9 494 72.9
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 9.2e-204 713.8 490 73.3
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 1.2e-203 713.4 490 73.1
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 1.6e-203 713.0 458 76.4
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 3.5e-203 711.8 487 72.7
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 7.8e-203 710.7 428 80.1
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 1.0e-202 710.3 494 72.7
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 8.6e-202 707.2 455 75.6
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 1.5e-201 706.4 454 76.2
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 1.5e-201 706.4 495 71.9
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 1.5e-201 706.4 498 72.3
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 2.5e-201 705.7 495 73.1
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 3.3e-201 705.3 434 77.0
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 9.6e-201 703.7 433 76.9
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 9.6e-201 703.7 493 71.4
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 9.6e-201 703.7 455 75.4
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 1.6e-200 703.0 462 74.5
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 1.6e-200 703.0 436 77.3
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 2.1e-200 702.6 422 79.9
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 2.1e-200 702.6 488 72.1
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 3.6e-200 701.8 467 74.1
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 3.6e-200 701.8 491 71.7
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 4.7e-200 701.4 460 75.0
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 8.1e-200 700.7 460 75.2
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 1.8e-199 699.5 488 71.1
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 2.4e-199 699.1 425 78.6
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 6.8e-199 697.6 455 73.6
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 8.9e-199 697.2 491 71.5
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 8.9e-199 697.2 486 72.2
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 2.6e-198 695.7 487 70.8
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 2.6e-198 695.7 427 78.2
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 3.4e-198 695.3 433 75.8
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 7.6e-198 694.1 487 70.8
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 1.7e-197 693.0 485 71.8
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 4.9e-197 691.4 495 70.1
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 4.9e-197 691.4 492 69.9
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 8.4e-197 690.6 487 70.0
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 8.4e-197 690.6 487 70.2
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 1.1e-196 690.3 491 70.5
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 2.4e-196 689.1 486 70.2
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 2.4e-196 689.1 486 70.2
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 2.4e-196 689.1 426 76.5
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 3.2e-196 688.7 486 70.6
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 1.2e-195 686.8 490 70.4
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 1.6e-195 686.4 425 77.6
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 1.6e-195 686.4 435 76.3
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 2.7e-195 685.6 488 69.9
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 4.6e-195 684.9 491 70.9
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 4.6e-195 684.9 495 71.5
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 2.3e-194 682.6 487 70.4
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 2.3e-194 682.6 487 70.4
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 3.0e-194 682.2 495 70.5
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 5.1e-194 681.4 490 70.6
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 5.1e-194 681.4 425 76.0
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 5.1e-194 681.4 455 74.3
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.5e-193 679.9 493 70.2
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 2.5e-193 679.1 425 77.4
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 4.3e-193 678.3 489 69.9
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 5.6e-193 677.9 429 76.7
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 7.3e-193 677.6 494 67.6
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 4.0e-191 671.8 425 76.9
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 1.2e-190 670.2 440 73.4
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 9.9e-190 667.2 488 69.3
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 1.3e-189 666.8 429 76.2
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 3.8e-189 665.2 446 73.1
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 6.4e-189 664.5 456 71.1
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 3.5e-187 658.7 448 73.9
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 4.6e-187 658.3 404 78.0
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 1.7e-186 656.4 493 66.9
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 1.9e-185 652.9 433 73.4
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 3.1e-183 645.6 402 76.6
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 2.6e-182 642.5 394 79.7
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 1.1e-180 637.1 484 66.1
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 2.4e-180 636.0 406 74.4
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.0e-178 630.6 475 66.3
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 2.1e-176 622.9 471 68.2
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 8.1e-176 620.9 379 78.6
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 8.1e-176 620.9 420 72.1
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 1.8e-175 619.8 425 71.3
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.8e-168 595.9 415 70.6
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 4.8e-168 595.1 480 65.2
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 4.1e-167 592.0 469 65.7
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 1.5e-166 590.1 443 66.4
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 2.0e-166 589.7 379 74.4
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 8.5e-165 584.3 479 64.1
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 5.9e-158 561.6 458 61.1
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 7.7e-158 561.2 491 60.7
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 9.4e-156 554.3 391 69.1
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 1.8e-154 550.1 342 76.9
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 1.5e-150 537.0 379 69.9
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 7.7e-150 534.6 404 66.8
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 3.2e-148 529.3 503 54.3
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 2.6e-142 509.6 449 58.8
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 7.7e-142 508.1 378 66.7
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 4.4e-137 492.3 458 54.6
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 1.2e-134 484.2 327 73.4
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.2e-115 421.0 257 79.0
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 2.7e-110 403.3 298 67.1
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 2.7e-110 403.3 298 67.1
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 2.5e-108 396.7 349 59.0
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 2.1e-107 393.7 388 52.1
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 1.1e-100 371.3 296 62.8
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 3.4e-97 359.8 286 62.9
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 2.7e-94 350.1 265 66.8
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 2.7e-94 350.1 271 65.7
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 2.5e-92 343.6 295 61.0
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 8.1e-91 338.6 380 46.1
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 5.4e-79 299.3 216 68.1
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.0e-77 295.0 236 66.9
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 1.2e-73 281.6 333 45.9
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 1.0e-69 268.5 580 32.4
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 1.2e-65 255.0 250 52.8
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 6.9e-50 202.6 458 32.8
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 3.1e-42 177.2 111 77.5
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 6.1e-38 162.9 113 73.5
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 1.7e-35 154.8 82 85.4
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.8e-35 154.1 112 65.2
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 1.6e-30 138.3 89 77.5
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 7.5e-20 102.8 74 68.9
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 1.4e-18 98.6 92 57.6
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 1.4e-18 98.6 61 68.9
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 2.4e-18 97.8 69 71.0
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 3.1e-18 97.4 68 72.1
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 3.1e-18 97.4 69 71.0
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 4.1e-18 97.1 69 72.5
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 4.1e-18 97.1 70 70.0
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 7.0e-18 96.3 69 69.6
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 7.0e-18 96.3 69 69.6
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 1.2e-17 95.5 69 69.6
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 2.0e-17 94.7 69 68.1
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 2.7e-17 94.4 68 69.1
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 2.9e-16 90.9 53 71.7
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.0e-13 82.4 69 62.3
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 2.4e-10 71.2 66 60.6
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 5.9e-09 66.6 45 71.1
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 1.0e-08 65.9 86 44.2
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 1.6e-06 58.5 43 62.8


User provided reference genes

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