Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 0.0e+00 3238.0 1671 100.0
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 0.0e+00 2130.9 1679 69.6
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 0.0e+00 2078.9 1622 69.9
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 0.0e+00 1599.7 1776 53.5
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 0.0e+00 1096.6 1784 40.8
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 0.0e+00 1087.4 1262 50.6
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 6.0e-303 1045.0 1811 40.0
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 7.8e-303 1044.6 1794 39.9
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 2.3e-302 1043.1 1715 40.8
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 8.7e-302 1041.2 1801 39.5
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 1.5e-298 1030.4 1801 40.3
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 9.9e-290 1001.1 1744 39.3
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 5.1e-286 988.8 1812 38.4
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 1.1e-283 981.1 1745 39.1
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 4.6e-279 965.7 1745 39.4
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 3.7e-276 956.1 1766 39.1
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 1.6e-271 940.6 1834 37.6
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 9.7e-269 931.4 1702 39.0
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 1.6e-268 930.6 1753 38.7
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 1.1e-267 927.9 1791 37.6
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 4.5e-266 922.5 1875 36.6
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 6.5e-265 918.7 1614 39.4
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.4e-262 911.0 1771 36.8
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 7.4e-261 905.2 1765 36.8
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 4.8e-260 902.5 1780 38.1
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 6.3e-260 902.1 1774 36.8
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 6.9e-259 898.7 1809 37.4
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 2.6e-258 896.7 1805 37.3
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 4.5e-258 896.0 1782 36.3
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 7.7e-258 895.2 1764 36.4
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 7.7e-258 895.2 1772 36.6
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 2.2e-257 893.6 1809 37.0
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 1.0e-254 884.8 1774 37.2
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 1.8e-254 884.0 1730 37.4
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 1.9e-248 864.0 1794 36.2
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 4.2e-248 862.8 1710 37.6
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 4.2e-248 862.8 2084 33.1
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 7.0e-243 845.5 1731 36.9
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 7.0e-243 845.5 1693 36.4
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 1.2e-242 844.7 1272 42.8
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 1.2e-242 844.7 1735 36.9
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 4.7e-239 832.8 1700 36.8
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 4.7e-239 832.8 1700 36.8
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 1.7e-236 824.3 1392 39.1
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 3.7e-236 823.2 1773 35.8
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 8.3e-236 822.0 1686 37.0
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 2.4e-235 820.5 1736 36.4
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 1.1e-232 811.6 1728 35.6
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 1.5e-232 811.2 1793 35.2
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 3.6e-231 806.6 1764 35.4
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 1.0e-225 788.5 1586 35.9
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 3.8e-225 786.6 1572 36.3
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 8.6e-225 785.4 1798 34.9
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 1.9e-224 784.3 1780 33.8
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 7.3e-224 782.3 1724 35.6
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 1.2e-223 781.6 1734 34.3
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 6.1e-223 779.2 1787 34.6
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 6.8e-222 775.8 1781 33.7
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 7.5e-221 772.3 1727 35.0
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 1.3e-217 761.5 1276 39.8
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 1.2e-215 755.0 1735 35.2
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 3.6e-215 753.4 1273 39.1
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 1.3e-212 745.0 1839 32.7
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 6.0e-210 736.1 1570 34.3
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 3.1e-206 723.8 1787 34.4
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 1.5e-205 721.5 1863 32.6
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 1.2e-202 711.8 1343 36.2
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 3.5e-202 710.3 1853 32.5
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 4.3e-200 703.4 1717 32.8
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 2.7e-194 684.1 1703 32.8
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 6.0e-194 682.9 1296 36.6
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 3.3e-192 677.2 1692 32.3
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 2.1e-191 674.5 1730 33.1
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 2.1e-191 674.5 1700 32.1
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 1.2e-189 668.7 1710 31.9
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 8.4e-188 662.5 1715 32.5
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 1.4e-187 661.8 1703 31.7
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 1.5e-184 651.7 1774 31.3
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 3.3e-184 650.6 1711 32.4
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 3.8e-180 637.1 1721 31.7
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 5.4e-179 633.3 1717 32.0
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 2.7e-178 630.9 810 44.4
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 7.9e-178 629.4 1707 31.3
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.6e-175 621.7 1478 34.2
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.2e-173 615.5 847 41.4
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 2.0e-165 588.2 689 45.4
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 3.0e-161 574.3 1328 32.1
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 4.3e-160 570.5 1766 30.7
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 3.2e-155 554.3 675 45.6
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 1.1e-152 545.8 647 47.1
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 3.1e-150 537.7 762 41.7
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 1.5e-149 535.4 1643 30.1
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 3.8e-148 530.8 1752 28.5
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 1.9e-139 501.9 1716 28.7
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 3.9e-137 494.2 1370 32.8
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 6.8e-121 440.3 794 41.9
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 3.8e-116 424.5 997 30.2
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.8e-98 365.2 433 45.0
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 9.5e-91 340.1 1093 30.3
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 3.2e-86 325.1 660 33.0
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 1.4e-81 309.7 910 28.0
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 3.1e-81 308.5 1185 29.6
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 2.7e-77 295.4 530 36.4
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 2.9e-71 275.4 456 34.2
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 1.2e-69 270.0 542 31.7
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.6e-66 259.6 821 30.8
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 3.8e-63 248.4 598 35.3
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 3.2e-62 245.4 866 27.9
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 4.3e-59 235.0 857 27.2
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 7.6e-48 197.6 640 34.7
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 7.1e-46 191.0 671 26.4
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 5.1e-44 184.9 1463 23.6
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 3.7e-26 125.6 318 34.9
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 3.1e-25 122.5 128 45.3
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 8.8e-20 104.4 410 30.7
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 4.4e-19 102.1 418 29.2
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 4.4e-19 102.1 511 27.0
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 1.8e-17 96.7 280 35.7
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 1.1e-14 87.4 129 38.0
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 1.4e-12 80.5 312 28.2
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 4.4e-11 75.5 59 69.5
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 2.8e-10 72.8 95 44.2
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 3.1e-09 69.3 210 30.0
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 9.1e-09 67.8 41 63.4
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 5.5e-06 58.5 297 29.3


User provided reference genes

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