Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 2.0e-115 419.1 206 100.0
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 3.8e-98 361.7 205 84.9
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 8.7e-95 350.5 206 82.0
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.1e-94 350.1 205 81.5
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 2.0e-83 312.8 200 74.0
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 2.0e-83 312.8 200 73.5
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 1.7e-82 309.7 200 71.0
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 3.8e-82 308.5 200 71.5
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 6.5e-82 307.8 200 73.0
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.4e-81 306.6 200 70.5
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 2.5e-81 305.8 200 71.0
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 3.2e-81 305.4 203 70.0
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 4.2e-81 305.1 200 69.0
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 7.1e-81 304.3 200 71.0
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 7.1e-81 304.3 200 70.0
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 9.3e-81 303.9 200 70.0
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 1.6e-80 303.1 200 72.0
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.7e-80 302.4 200 71.5
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.7e-80 302.4 200 71.5
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 2.7e-80 302.4 200 71.5
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 3.5e-80 302.0 200 71.0
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 3.5e-80 302.0 200 70.0
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 4.6e-80 301.6 200 69.0
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 6.0e-80 301.2 200 71.5
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 7.9e-80 300.8 254 60.2
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 1.0e-79 300.4 200 68.5
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 1.3e-79 300.1 200 73.0
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.0e-79 298.9 200 71.0
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.0e-79 298.9 200 71.0
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 3.9e-79 298.5 201 70.1
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 3.9e-79 298.5 200 69.5
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 5.1e-79 298.1 200 69.0
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 8.7e-79 297.4 200 69.5
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 8.7e-79 297.4 200 69.5
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 8.7e-79 297.4 200 70.0
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 8.7e-79 297.4 200 71.0
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 1.1e-78 297.0 200 68.5
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 1.9e-78 296.2 200 65.5
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 2.5e-78 295.8 200 69.5
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 3.3e-78 295.4 200 70.5
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 4.3e-78 295.0 200 69.0
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 4.3e-78 295.0 200 68.5
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.3e-78 295.0 207 68.6
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 9.7e-78 293.9 200 67.5
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.3e-77 293.5 206 68.0
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 2.1e-77 292.7 200 68.5
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 2.1e-77 292.7 200 66.0
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 2.1e-77 292.7 200 70.5
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 4.8e-77 291.6 200 68.0
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 6.3e-77 291.2 200 68.5
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 6.3e-77 291.2 202 69.8
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 6.3e-77 291.2 200 67.5
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 8.2e-77 290.8 200 70.0
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 1.1e-76 290.4 200 67.5
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 1.4e-76 290.0 200 69.0
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 1.4e-76 290.0 200 67.5
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 1.8e-76 289.7 200 67.0
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 4.1e-76 288.5 200 65.5
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 4.1e-76 288.5 200 65.5
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 5.3e-76 288.1 200 66.5
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 5.3e-76 288.1 200 67.5
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 5.3e-76 288.1 200 68.5
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 5.3e-76 288.1 200 66.5
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 9.0e-76 287.3 200 66.0
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 1.2e-75 287.0 200 66.5
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.2e-75 287.0 201 67.7
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 1.2e-75 287.0 233 59.2
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 1.2e-75 287.0 216 63.0
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 2.0e-75 286.2 201 64.7
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 3.4e-75 285.4 200 66.5
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 4.5e-75 285.0 241 57.3
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 5.9e-75 284.6 200 66.0
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 5.9e-75 284.6 201 68.7
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.0e-74 283.9 200 66.0
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 1.0e-74 283.9 200 65.5
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 2.2e-74 282.7 200 64.5
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 2.9e-74 282.3 200 64.0
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 3.8e-74 282.0 201 64.2
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 8.5e-74 280.8 200 64.5
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.4e-73 280.0 200 65.5
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 1.9e-73 279.6 200 63.5
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 3.2e-73 278.9 200 63.0
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 3.2e-73 278.9 200 63.0
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 1.2e-72 276.9 204 63.2
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.2e-72 276.9 234 58.1
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 1.2e-72 276.9 175 73.1
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 1.6e-72 276.6 216 59.7
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.6e-72 276.6 234 57.7
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 2.7e-72 275.8 219 58.9
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 3.6e-72 275.4 239 55.6
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 4.6e-72 275.0 200 62.5
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 7.9e-72 274.2 200 64.0
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 8.7e-71 270.8 200 63.5
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 5.7e-70 268.1 200 63.0
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.6e-69 266.5 172 70.3
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 8.2e-69 264.2 188 64.4
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 1.5e-67 260.0 173 68.8
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 3.4e-67 258.8 178 68.5
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.3e-66 256.9 201 59.7
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 4.6e-64 248.4 172 66.3
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 6.1e-64 248.1 182 62.6
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 6.1e-64 248.1 200 58.5
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 2.0e-62 243.0 193 58.0
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 3.7e-61 238.8 200 57.5
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 6.3e-61 238.0 200 56.0
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 1.1e-60 237.3 157 70.1
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 4.1e-60 235.3 200 59.0
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 1.2e-59 233.8 163 66.9
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 8.8e-55 217.6 169 60.9
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 4.4e-54 215.3 200 48.0
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 1.3e-53 213.8 200 49.5
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 2.0e-51 206.5 202 48.0
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 2.6e-51 206.1 147 64.6
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 2.2e-50 203.0 137 67.9
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 2.1e-48 196.4 193 48.2
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 9.7e-46 187.6 143 58.0
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 3.1e-44 182.6 144 62.5
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 7.7e-43 177.9 132 59.1
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 1.3e-42 177.2 187 50.8
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 2.9e-42 176.0 162 48.8
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 2.9e-42 176.0 116 65.5
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 3.2e-41 172.6 126 58.7
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 9.4e-41 171.0 132 62.9
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 4.7e-40 168.7 114 69.3
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 3.4e-38 162.5 145 53.1
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 1.0e-34 151.0 112 64.3
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 2.9e-34 149.4 145 48.3
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.3e-33 146.0 116 55.2
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 5.5e-33 145.2 116 55.2
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 2.0e-30 136.7 126 54.8
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 1.7e-29 133.7 88 61.4
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 3.5e-27 125.9 81 72.8
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 1.7e-26 123.6 77 75.3
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 2.3e-26 123.2 142 40.8
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 1.2e-24 117.5 77 74.0
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 6.1e-24 115.2 77 71.4
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 8.9e-23 111.3 83 65.1
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 2.0e-22 110.2 77 67.5
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 5.8e-22 108.6 77 68.8
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 7.5e-22 108.2 77 66.2
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 7.5e-22 108.2 77 66.2
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 2.2e-21 106.7 77 57.1
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 3.7e-21 105.9 98 55.1
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.1e-20 104.4 77 62.3
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 2.4e-20 103.2 57 77.2
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 1.6e-19 100.5 69 68.1
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 7.8e-19 98.2 55 78.2
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 6.6e-18 95.1 75 60.0
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 2.5e-17 93.2 141 41.1
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 2.5e-17 93.2 72 61.1
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 3.3e-17 92.8 99 44.4
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 1.4e-15 87.4 61 65.6
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 2.2e-13 80.1 56 58.9
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 3.7e-13 79.3 193 24.9
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 6.4e-13 78.6 63 52.4
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 6.4e-13 78.6 64 60.9
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 1.4e-12 77.4 57 59.6
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 7.0e-12 75.1 57 57.9
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 6.0e-11 72.0 53 62.3
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 6.0e-11 72.0 46 71.7
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 1.1e-09 67.8 121 32.2
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 1.9e-09 67.0 61 44.3
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 2.8e-08 63.2 51 56.9
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 5.2e-07 58.9 73 45.2
VMungo0540G1689 Vigna mungo HOM05D004322 ORTHO05D005033 8.9e-07 58.2 188 29.3
Lsat_1_v5_gn_4_104380 Lactuca sativa HOM05D001722 ORTHO05D048310 7.5e-06 55.1 36 50.0


User provided reference genes

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