Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 3.7e-203 711.4 394 100.0
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 5.2e-157 558.1 393 77.9
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 6.6e-152 541.2 416 71.9
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 1.9e-146 523.1 415 71.8
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.4e-125 453.8 352 71.9
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 1.9e-119 433.3 392 61.7
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 6.3e-118 428.3 395 62.0
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 1.4e-117 427.2 395 61.0
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 6.9e-117 424.9 407 60.2
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 2.0e-116 423.3 401 61.1
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 2.6e-116 422.9 400 60.8
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 5.9e-116 421.8 400 61.0
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 5.9e-116 421.8 394 60.4
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 1.0e-115 421.0 396 59.6
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.7e-115 420.2 395 60.0
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 3.8e-115 419.1 400 61.0
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 8.5e-115 417.9 397 61.2
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 8.5e-115 417.9 393 60.6
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 1.4e-114 417.2 400 60.2
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.9e-114 416.8 398 61.1
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 4.2e-114 415.6 391 60.6
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 9.4e-114 414.5 397 60.5
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 9.4e-114 414.5 396 59.8
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 1.2e-113 414.1 391 60.4
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 1.2e-113 414.1 394 59.6
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 7.9e-113 411.4 375 62.1
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 8.8e-112 407.9 395 60.0
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.1e-111 407.5 396 61.4
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 1.1e-111 407.5 394 59.9
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 1.1e-111 407.5 398 59.3
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 3.3e-111 406.0 402 60.0
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 9.7e-111 404.4 392 60.2
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 4.1e-109 399.1 399 58.4
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 6.9e-109 398.3 399 58.6
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.2e-108 397.5 398 56.8
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.5e-108 397.1 399 58.4
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 1.5e-108 397.1 398 58.3
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 1.5e-108 397.1 416 55.8
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 1.0e-107 394.4 389 59.6
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.0e-107 394.4 399 58.1
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.3e-107 394.0 399 60.4
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.5e-106 389.8 396 56.8
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 3.2e-106 389.4 396 57.6
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 4.2e-106 389.0 408 58.3
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 6.1e-105 385.2 396 58.3
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 8.0e-105 384.8 369 60.2
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 8.0e-105 384.8 426 54.9
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 1.4e-104 384.0 392 58.7
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 5.2e-104 382.1 399 57.9
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 8.8e-104 381.3 423 55.6
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 2.6e-103 379.8 397 57.9
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 7.4e-103 378.3 393 57.0
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 9.7e-103 377.9 393 56.7
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 9.7e-103 377.9 396 56.1
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 9.1e-101 371.3 404 57.2
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 9.1e-101 371.3 370 58.4
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 3.5e-100 369.4 394 56.1
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.5e-100 369.4 313 70.6
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 4.5e-100 369.0 395 55.2
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 5.9e-100 368.6 399 55.9
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 7.7e-100 368.2 371 59.8
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 7.7e-100 368.2 397 55.7
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 1.7e-99 367.1 432 53.7
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.9e-99 366.3 395 57.2
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 5.0e-99 365.5 376 57.7
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 8.5e-99 364.8 395 57.2
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 1.1e-98 364.4 404 55.4
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 5.5e-98 362.1 399 54.4
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 7.2e-98 361.7 468 49.6
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 7.2e-98 361.7 446 51.6
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 7.2e-98 361.7 389 55.5
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 2.1e-97 360.1 385 55.8
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 4.7e-97 359.0 402 54.2
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 2.3e-96 356.7 400 54.8
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 4.0e-96 355.9 393 55.2
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 8.8e-96 354.8 409 53.5
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.2e-95 354.4 399 52.9
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.6e-95 353.2 399 52.6
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 4.4e-95 352.4 370 56.8
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 9.7e-95 351.3 391 55.0
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.3e-94 350.9 400 55.8
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 1.7e-94 350.5 390 55.6
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 2.8e-94 349.7 388 57.5
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 4.8e-94 349.0 372 56.2
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 4.8e-94 349.0 396 54.5
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 6.3e-94 348.6 395 56.2
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 4.1e-93 345.9 401 53.4
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 5.3e-93 345.5 396 53.3
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 1.2e-92 344.4 397 52.4
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 2.7e-92 343.2 372 54.8
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 3.5e-92 342.8 403 54.8
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 7.7e-92 341.7 403 53.8
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 8.5e-91 338.2 391 54.7
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 8.5e-91 338.2 391 54.7
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 9.4e-90 334.7 404 51.7
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 2.1e-89 333.6 396 52.5
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 6.1e-89 332.0 399 52.9
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 6.8e-88 328.6 394 53.8
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 5.7e-87 325.5 399 50.9
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 1.8e-85 320.5 407 49.9
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 2.3e-83 313.5 392 52.0
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 5.0e-83 312.4 402 48.5
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 5.5e-82 308.9 246 68.7
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 2.8e-81 306.6 321 59.2
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 1.4e-80 304.3 377 51.2
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 1.3e-78 297.7 389 49.6
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 7.0e-77 292.0 400 48.0
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 2.3e-75 287.0 397 48.9
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 8.6e-75 285.0 313 55.9
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 2.5e-74 283.5 397 50.1
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 2.6e-71 273.5 396 47.7
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 4.1e-69 266.2 191 75.4
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 3.5e-68 263.1 212 68.9
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 1.3e-62 244.6 304 52.0
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 7.8e-60 235.3 265 53.6
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 3.0e-59 233.4 332 47.3
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 8.1e-57 225.3 164 71.3
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 2.0e-55 220.7 310 48.7
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.2e-52 211.5 275 51.6
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 2.1e-52 210.7 396 39.6
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 4.6e-52 209.5 266 51.1
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 1.5e-50 204.5 272 51.8
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 9.5e-50 201.8 241 53.9
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 1.6e-49 201.1 272 51.5
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 3.6e-49 199.9 268 50.0
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.8e-48 197.6 135 71.9
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 2.2e-46 190.7 269 49.4
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 3.8e-46 189.9 134 70.9
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 8.4e-46 188.7 406 36.7
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 9.2e-45 185.3 184 60.9
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 4.6e-44 183.0 263 49.0
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 4.3e-42 176.4 261 47.5
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 9.6e-42 175.3 394 37.8
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 2.8e-41 173.7 260 48.1
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 4.4e-39 166.4 177 54.2
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 6.4e-38 162.5 428 35.0
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 4.6e-36 156.4 138 61.6
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 4.6e-36 156.4 131 65.6
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 3.9e-35 153.3 198 49.5
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 5.1e-35 152.9 397 37.0
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 6.6e-35 152.5 115 71.3
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 2.9e-30 137.1 115 60.9
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 5.6e-26 122.9 442 31.4
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 4.2e-21 106.7 123 54.5
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 1.1e-13 82.0 146 39.7
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 1.5e-07 61.6 38 73.7
BolC8t52058H Brassica oleracea HOM05D005050 ORTHO05D006198 2.6e-07 60.8 34 82.4
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 6.5e-06 56.2 36 72.2


User provided reference genes

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