Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 0.0e+00 2500.7 1299 100.0
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 0.0e+00 1253.0 1399 56.1
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 0.0e+00 1246.1 1403 55.6
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 3.9e-302 1042.0 1331 51.2
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 6.2e-263 911.8 1366 46.4
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 4.4e-160 570.1 1355 36.2
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 6.9e-129 466.5 1455 31.6
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 1.9e-126 458.4 1401 31.8
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 9.3e-126 456.1 1398 30.7
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 2.7e-125 454.5 1391 31.2
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 5.1e-124 450.3 1334 32.2
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 1.1e-123 449.1 1403 31.1
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 4.0e-121 440.7 1421 30.4
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 6.9e-121 439.9 1444 30.6
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 1.1e-118 432.6 1420 30.8
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 6.0e-117 426.8 1359 29.7
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 4.3e-115 420.6 1380 30.3
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 1.3e-114 419.1 1413 30.4
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 3.6e-114 417.5 1493 28.8
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 4.0e-113 414.1 1343 29.8
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 2.6e-112 411.4 1468 29.8
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 5.8e-112 410.2 1386 30.2
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 3.5e-109 401.0 1410 28.4
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 3.1e-105 387.9 1306 29.5
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 4.0e-105 387.5 1376 29.5
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 1.0e-103 382.9 1305 30.0
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 1.0e-103 382.9 1488 29.4
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 2.1e-101 375.2 1404 28.5
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 1.3e-100 372.5 1371 29.1
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 1.8e-100 372.1 1369 28.8
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 1.1e-99 369.4 1419 28.8
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 6.3e-98 363.6 1364 29.0
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 1.4e-97 362.5 1407 29.4
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 7.6e-96 356.7 1412 29.1
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 1.0e-95 356.3 1362 28.8
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 1.7e-95 355.5 1342 28.1
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 2.2e-95 355.1 1391 28.3
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 4.2e-94 350.9 1393 26.9
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 1.2e-93 349.4 1392 27.5
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 2.3e-92 345.1 1391 27.9
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 5.1e-92 344.0 1433 27.4
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 8.7e-92 343.2 1348 28.0
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 1.9e-91 342.0 1386 28.3
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.4e-89 335.9 1382 27.9
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 1.4e-89 335.9 1434 27.3
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 1.8e-89 335.5 1328 28.1
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 2.4e-89 335.1 1201 29.1
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.2e-88 332.8 1385 28.4
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.2e-87 328.6 1369 27.8
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 5.0e-87 327.4 1381 27.7
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 5.1e-84 317.4 1375 28.2
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 9.7e-83 313.2 1322 27.5
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 6.3e-82 310.5 1377 27.7
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 2.4e-81 308.5 1412 27.5
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 5.3e-81 307.4 1255 28.2
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 1.2e-80 306.2 1332 26.3
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 3.4e-80 304.7 1320 27.1
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 7.7e-80 303.5 1320 28.3
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 3.2e-78 298.1 1320 27.4
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 3.2e-78 298.1 1320 27.4
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 7.2e-78 297.0 1331 28.1
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 6.7e-76 290.4 1321 26.0
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 6.7e-76 290.4 1321 26.0
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 6.7e-76 290.4 955 29.9
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 1.1e-75 289.7 1418 27.9
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 9.1e-73 280.0 1323 26.2
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 2.2e-71 275.4 1325 26.0
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 1.1e-70 273.1 1317 25.7
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 3.2e-70 271.6 1412 27.1
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 2.1e-69 268.9 1554 25.9
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 3.6e-69 268.1 1333 25.0
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 2.3e-68 265.4 1341 26.1
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 3.0e-68 265.0 1191 26.2
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 7.5e-67 260.4 1234 25.0
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 1.3e-66 259.6 1334 25.9
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 2.0e-64 252.3 1318 25.0
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 2.7e-64 251.9 1312 25.8
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 1.9e-62 245.7 1391 25.2
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 4.2e-62 244.6 1243 26.1
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 9.4e-62 243.4 1331 26.1
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 9.8e-59 233.4 457 34.8
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 9.8e-59 233.4 1563 23.7
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 2.2e-58 232.3 477 32.7
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 2.8e-58 231.9 954 25.7
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 8.3e-58 230.3 944 26.2
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 9.1e-57 226.9 786 29.8
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 2.0e-56 225.7 1359 24.3
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 2.0e-56 225.7 1359 25.9
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 1.5e-54 219.5 1380 24.9
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 9.5e-54 216.9 422 33.4
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 9.5e-54 216.9 348 35.1
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 6.1e-53 214.2 1294 24.9
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 8.0e-53 213.8 1442 23.4
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 4.1e-49 201.4 508 30.9
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 5.4e-49 201.1 418 32.3
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.2e-48 199.9 494 30.4
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 7.8e-48 197.2 1136 25.8
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 2.9e-47 195.3 1566 23.5
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 1.8e-44 186.0 491 30.1
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 3.0e-44 185.3 1366 24.8
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 1.5e-43 183.0 1326 24.1
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 2.7e-40 172.2 437 28.6
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 3.9e-39 168.3 407 30.2
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 6.2e-37 161.0 1293 22.2
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 5.2e-36 157.9 279 35.8
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 1.2e-35 156.8 1298 22.6
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 3.4e-35 155.2 77 93.5
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 7.5e-35 154.1 1311 22.3
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 1.4e-33 149.8 252 44.8
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 8.6e-31 140.6 263 31.6
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 3.3e-30 138.7 282 37.6
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 3.3e-30 138.7 310 31.0
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 1.1e-28 133.7 370 33.0
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 1.4e-28 133.3 413 32.7
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 8.3e-26 124.0 149 45.6
EL10Ac1g01838 Beta vulgaris HOM05D000625 ORTHO05D006343 4.1e-25 121.7 65 92.3
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.1e-22 113.6 539 25.6
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 5.6e-22 111.3 255 36.9
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 5.2e-20 104.8 252 34.9
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 6.4e-18 97.8 118 42.4
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 2.4e-17 95.9 129 41.9
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 1.0e-15 90.5 145 31.7
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 9.6e-14 84.0 84 48.8
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 3.8e-10 72.0 145 28.3
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 8.4e-10 70.9 110 41.8
Cpa.g.c43179 Carica papaya HOM05D005171 ORTHO05D006343 1.6e-08 66.6 128 43.8
Cpa.g.sc136.58 Carica papaya HOM05D005171 ORTHO05D006343 1.6e-08 66.6 141 40.4
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 1.6e-08 66.6 110 32.7
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 2.1e-08 66.2 87 43.7
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.7e-08 65.9 125 44.0
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 4.6e-08 65.1 70 48.6
SEGI_11604 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 6.0e-08 64.7 101 32.7
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.3e-07 62.8 125 44.0
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 3.9e-07 62.0 271 28.0
SalBow7G0566 Salvia bowleyana HOM05D005171 ORTHO05D006343 9.6e-06 57.4 105 44.8


User provided reference genes

Program Settings