Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03214 Beta vulgaris HOM05D004726 ORTHO05D005986 0.0e+00 1745.7 819 100.0
AUR62018238 Chenopodium quinoa HOM05D004726 ORTHO05D005986 0.0e+00 1477.6 819 83.3
Ah.11g044820 Amaranthus hybridus HOM05D004726 ORTHO05D005986 0.0e+00 1461.0 826 81.7
AUR62037765 Chenopodium quinoa HOM05D004726 ORTHO05D005986 0.0e+00 1461.0 810 83.0
Hund13042 Selenicereus undatus HOM05D004726 ORTHO05D005986 0.0e+00 1364.4 871 73.7
Sc07g0004390 Simmondsia chinensis HOM05D004726 ORTHO05D005986 0.0e+00 1339.7 831 75.9
Ah.12g055330 Amaranthus hybridus HOM05D004726 ORTHO05D005986 0.0e+00 1271.9 742 79.1
Dinv33391 Davidia involucrata HOM05D004726 ORTHO05D005986 0.0e+00 1260.7 797 72.3
Lju41A46T85 Lonicera japonica HOM05D004726 ORTHO05D005986 0.0e+00 1259.6 810 71.6
Manes.17G107900 Manihot esculenta HOM05D004726 ORTHO05D005986 0.0e+00 1253.0 811 71.3
COL.COLO4_29260 Corchorus olitorius HOM05D004726 ORTHO05D005986 0.0e+00 1249.6 789 72.8
Nn4g22464 Nelumbo nucifera HOM05D004726 ORTHO05D005986 0.0e+00 1241.9 790 71.6
CSS0005841 Camellia sinensis var. sinensis HOM05D004726 ORTHO05D005986 0.0e+00 1241.1 790 72.2
Prupe.3G298800 Prunus persica HOM05D004726 ORTHO05D005986 0.0e+00 1240.7 793 71.1
Cfa007289 Carpinus fangiana HOM05D004726 ORTHO05D005986 0.0e+00 1240.3 784 72.2
CSS0026983 Camellia sinensis var. sinensis HOM05D004726 ORTHO05D005986 0.0e+00 1236.1 790 72.0
GSVIVG01003968001 Vitis vinifera HOM05D004726 ORTHO05D005986 0.0e+00 1236.1 788 72.2
QL02p073257 Quercus lobata HOM05D004726 ORTHO05D005986 0.0e+00 1234.6 791 71.4
Cpa.g.sc130.48 Carica papaya HOM05D004726 ORTHO05D005986 0.0e+00 1233.4 783 72.2
Potri.001G336400 Populus trichocarpa HOM05D004726 ORTHO05D005986 0.0e+00 1233.0 776 72.0
Gohir.A09G032200 Gossypium hirsutum HOM05D004726 ORTHO05D005986 0.0e+00 1231.1 812 70.1
FAN05G3820 Fragaria x ananassa HOM05D004726 ORTHO05D005986 0.0e+00 1230.7 810 69.9
Gohir.D09G032300 Gossypium hirsutum HOM05D004726 ORTHO05D005986 0.0e+00 1230.7 814 70.3
Sabra16G0217200 Salix brachista HOM05D004726 ORTHO05D005986 0.0e+00 1230.7 764 73.2
Gorai.006G037200 Gossypium raimondii HOM05D004726 ORTHO05D005986 0.0e+00 1229.9 814 70.0
Lalb_Chr21g0317631 Lupinus albus HOM05D004726 ORTHO05D005986 0.0e+00 1229.5 821 69.9
RcHm_v2.0_Chr2g0174041 Rosa chinensis HOM05D004726 ORTHO05D005986 0.0e+00 1229.5 787 71.5
THA.LOC104821108 Tarenaya hassleriana HOM05D004726 ORTHO05D005986 0.0e+00 1229.2 786 71.9
Duzib187G0212 Durio zibethinus HOM05D004726 ORTHO05D005986 0.0e+00 1228.0 787 72.3
MELO3C014786.2 Cucumis melo HOM05D004726 ORTHO05D005986 0.0e+00 1225.3 812 69.8
FvH4_6g52410 Fragaria vesca HOM05D004726 ORTHO05D005986 0.0e+00 1225.3 788 71.1
MD09G1018400 Malus domestica HOM05D004726 ORTHO05D005986 0.0e+00 1225.3 794 71.4
CsaV3_3G027570 Cucumis sativus L. HOM05D004726 ORTHO05D005986 0.0e+00 1224.5 812 69.7
TWI56G1181 Tripterygium wilfordii HOM05D004726 ORTHO05D005986 0.0e+00 1224.5 780 72.4
Ciclev10014283m.g Citrus clementina HOM05D004726 ORTHO05D005986 0.0e+00 1223.0 794 70.8
Thecc.04G026000 Theobroma cacao HOM05D004726 ORTHO05D005986 0.0e+00 1222.2 784 71.7
Thhalv10020079m.g Eutrema salsugineum HOM05D004726 ORTHO05D005986 0.0e+00 1219.1 791 70.3
MD17G1018800 Malus domestica HOM05D004726 ORTHO05D005986 0.0e+00 1216.8 793 70.7
Aa31LG5G10860 Aethionema arabicum HOM05D004726 ORTHO05D005986 0.0e+00 1216.4 791 69.9
arahy.Tifrunner.gnm1.ann1.2353RE Arachis hypogaea HOM05D004726 ORTHO05D005986 0.0e+00 1216.4 817 68.9
arahy.Tifrunner.gnm1.ann1.Q8ZL0R Arachis hypogaea HOM05D004726 ORTHO05D005986 0.0e+00 1216.1 804 69.5
PSO017G0372 Papaver somniferum HOM05D004726 ORTHO05D005986 0.0e+00 1214.9 819 69.0
CiPaw.03G049600 Carya illinoinensis HOM05D004726 ORTHO05D005986 0.0e+00 1211.4 780 72.1
PSO478G3762 Papaver somniferum HOM05D004726 ORTHO05D005986 0.0e+00 1211.4 819 68.7
AT3G01720 Arabidopsis thaliana HOM05D004726 ORTHO05D005986 0.0e+00 1209.9 802 68.7
Oeu048592.1 Olea europaea HOM05D004726 ORTHO05D005986 0.0e+00 1209.9 804 69.3
DCAR_002964 Daucus carota HOM05D004726 ORTHO05D005986 0.0e+00 1209.1 789 70.5
AL3G10420 Arabidopsis lyrata HOM05D004726 ORTHO05D005986 0.0e+00 1208.7 778 70.8
Carub.0003s0033 Capsella rubella HOM05D004726 ORTHO05D005986 0.0e+00 1208.0 789 69.7
FAN02G2743 Fragaria x ananassa HOM05D004726 ORTHO05D005986 0.0e+00 1207.2 758 72.7
FAN14G5799 Fragaria x ananassa HOM05D004726 ORTHO05D005986 0.0e+00 1205.7 786 70.5
Sed0012188 Sechium edule HOM05D004726 ORTHO05D005986 0.0e+00 1204.1 822 67.8
Cc07_g00350 Coffea canephora HOM05D004726 ORTHO05D005986 0.0e+00 1202.6 795 69.8
PGR083G2241 Punica granatum HOM05D004726 ORTHO05D005986 0.0e+00 1202.6 782 71.1
Sed0019499 Sechium edule HOM05D004726 ORTHO05D005986 0.0e+00 1202.6 813 68.1
Aqoxy5G03586 Aquilegia oxysepala HOM05D004726 ORTHO05D005986 0.0e+00 1201.8 783 71.3
BraA03t12409Z Brassica rapa HOM05D004726 ORTHO05D005986 0.0e+00 1201.4 778 69.8
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 0.0e+00 1201.0 784 70.2
A03p32390 Brassica napus HOM05D004726 ORTHO05D005986 0.0e+00 1200.3 778 69.8
HanXRQChr14g0451431 Helianthus annuus HOM05D004726 ORTHO05D005986 0.0e+00 1198.7 783 71.1
BolC3t16213H Brassica oleracea HOM05D004726 ORTHO05D005986 0.0e+00 1198.0 778 69.8
Oeu033801.1 Olea europaea HOM05D004726 ORTHO05D005986 0.0e+00 1198.0 830 67.2
Lj2g0016129 Lotus japonicus HOM05D004726 ORTHO05D005986 0.0e+00 1197.6 814 69.3
Glyma.05G072300 Glycine max HOM05D004726 ORTHO05D005986 0.0e+00 1197.2 784 69.3
C03p39450 Brassica napus HOM05D004726 ORTHO05D005986 0.0e+00 1196.8 779 69.7
Sp3g00330 Schrenkiella parvula HOM05D004726 ORTHO05D005986 0.0e+00 1196.8 791 68.9
PSO017G1160 Papaver somniferum HOM05D004726 ORTHO05D005986 0.0e+00 1196.0 818 67.8
SGA_v2.0_scaffold135G34934 Striga asiatica HOM05D004726 ORTHO05D005986 0.0e+00 1194.1 795 69.2
SalBow2G0243 Salvia bowleyana HOM05D004726 ORTHO05D005986 0.0e+00 1192.2 838 66.3
Ca_04399_v3 Cicer arietinum L. HOM05D004726 ORTHO05D005986 0.0e+00 1189.9 820 67.6
PGSC0003DMG400030549 Solanum tuberosum HOM05D004726 ORTHO05D005986 0.0e+00 1188.7 898 63.6
VMungo0464G1053 Vigna mungo HOM05D004726 ORTHO05D005986 0.0e+00 1187.6 811 67.1
Solyc05g008260.3 Solanum lycopersicum HOM05D004726 ORTHO05D005986 0.0e+00 1184.1 875 64.3
Nitab4.5_0004776g0030 Nicotiana tabacum HOM05D004726 ORTHO05D005986 0.0e+00 1182.9 863 64.3
Sopen05g004100 Solanum pennellii HOM05D004726 ORTHO05D005986 0.0e+00 1182.5 880 64.0
Phvul.004G058000 Phaseolus vulgaris HOM05D004726 ORTHO05D005986 0.0e+00 1177.5 808 67.3
Lsat_1_v5_gn_2_93500 Lactuca sativa HOM05D004726 ORTHO05D005986 0.0e+00 1175.6 800 69.1
CANSAT64G1163 Cannabis sativa HOM05D004726 ORTHO05D005986 0.0e+00 1175.2 786 68.1
TPR.G7511 Trifolium pratense HOM05D004726 ORTHO05D005986 0.0e+00 1175.2 838 65.3
Psat1g083400 Pisum sativum HOM05D004726 ORTHO05D005986 0.0e+00 1169.8 812 66.3
ATR0824G115 Amborella trichopoda HOM05D004726 ORTHO05D005986 0.0e+00 1169.1 695 75.4
Glyma.16G063900 Glycine max HOM05D004726 ORTHO05D005986 0.0e+00 1161.0 804 67.7
Lj1g0014024 Lotus japonicus HOM05D004726 ORTHO05D005986 0.0e+00 1160.2 800 67.6
Phvul.008G146800 Phaseolus vulgaris HOM05D004726 ORTHO05D005986 0.0e+00 1157.1 771 69.5
PSO386G0103 Papaver somniferum HOM05D004726 ORTHO05D005986 0.0e+00 1154.4 805 67.0
Migut.G00516 Erythranthe guttata HOM05D004726 ORTHO05D005986 0.0e+00 1151.7 846 64.2
Lalb_Chr22g0360561 Lupinus albus HOM05D004726 ORTHO05D005986 0.0e+00 1148.7 778 67.4
Medtr0044s0180 Medicago truncatula HOM05D004726 ORTHO05D005986 0.0e+00 1147.9 814 66.3
ClCG05G012910 Citrullus lanatus HOM05D004726 ORTHO05D005986 0.0e+00 1147.5 790 67.6
Psat0s1369g0120 Pisum sativum HOM05D004726 ORTHO05D005986 0.0e+00 1145.2 803 66.9
Rhsim05G0094900 Rhododendron simsii HOM05D004726 ORTHO05D005986 0.0e+00 1142.1 864 63.3
TPR.G9063 Trifolium pratense HOM05D004726 ORTHO05D005986 0.0e+00 1140.6 807 67.2
HPP92_015461 Vanilla planifolia HOM05D004726 ORTHO05D005986 0.0e+00 1134.0 777 67.1
Ca_03877_v3 Cicer arietinum L. HOM05D004726 ORTHO05D005986 0.0e+00 1129.8 706 72.2
Nn3g16582 Nelumbo nucifera HOM05D004726 ORTHO05D005986 0.0e+00 1125.5 802 67.2
Medtr6g022320 Medicago truncatula HOM05D004726 ORTHO05D005986 0.0e+00 1119.4 961 57.1
BcaC01g04537 Brassica carinata HOM05D004726 ORTHO05D005986 0.0e+00 1119.0 779 66.2
Os01g0904500 Oryza sativa ssp. japonica HOM05D004726 ORTHO05D005986 0.0e+00 1118.2 819 63.7
SHI03847 Sapria himalayana HOM05D004726 ORTHO05D005986 0.0e+00 1113.2 815 64.9
vmacro05911 Vaccinium macrocarpon HOM05D004726 ORTHO05D005986 0.0e+00 1108.6 774 66.8
Duzib147G0777 Durio zibethinus HOM05D004726 ORTHO05D005986 0.0e+00 1098.2 785 66.2
Haze_14803 Corylus avellana HOM05D004726 ORTHO05D005986 0.0e+00 1090.9 784 65.4
Glyma.19G055500 Glycine max HOM05D004726 ORTHO05D005986 0.0e+00 1078.2 724 68.4
Actinidia36156 Actinidia chinensis HOM05D004726 ORTHO05D005986 5.6e-312 1073.9 726 68.6
vmacro05915 Vaccinium macrocarpon HOM05D004726 ORTHO05D005986 1.1e-311 1072.8 654 74.2
SMO117G0207 Selaginella moellendorffii HOM05D004726 ORTHO05D005986 9.2e-297 1023.5 797 60.4
Eucgr.J02276 Eucalyptus grandis HOM05D004726 ORTHO05D005986 6.8e-292 1007.3 780 61.5
AagrBONN_evm.TU.Sc2ySwM_344.876 Anthoceros agrestis HOM05D004726 ORTHO05D005986 1.9e-286 989.2 780 60.4
Pp3c10_20040 Physcomitrium patens HOM05D004726 ORTHO05D005986 6.2e-285 984.2 804 58.5
Mapoly0014s0026 Marchantia polymorpha HOM05D004726 ORTHO05D005986 6.8e-284 980.7 849 55.2
Peaxi162Scf00205g00121 Petunia axillaris HOM05D004726 ORTHO05D005986 1.5e-283 979.5 831 56.8
Oeu054664.1 Olea europaea HOM05D004726 ORTHO05D005986 6.7e-247 857.8 707 57.9
TAR374G1052 Trochodendron aralioides HOM05D004726 ORTHO05D005986 2.1e-240 836.3 590 66.6
Oeu050441.1 Olea europaea HOM05D004726 ORTHO05D005986 5.1e-239 831.6 618 62.9
Pp3c3_33250 Physcomitrium patens HOM05D004726 ORTHO05D005986 8.2e-205 718.0 638 55.6
VMungo1383G2700 Vigna mungo HOM05D004726 ORTHO05D005986 1.6e-203 713.8 434 73.5
Atru.BG.103.p Acer truncatum HOM05D004726 ORTHO05D005986 2.1e-184 650.2 398 74.1
Atru.chr3.2443 Acer truncatum HOM05D004726 ORTHO05D005986 1.7e-178 630.6 435 67.4
CARHR075200 Cardamine hirsuta HOM05D004726 ORTHO05D005986 6.6e-162 575.5 417 65.2
TAR622G0871 Trochodendron aralioides HOM05D004726 ORTHO05D005986 5.8e-158 562.4 389 68.4
Atru.chr3.1245 Acer truncatum HOM05D004726 ORTHO05D005986 1.0e-146 525.0 277 81.2
Gohir.D07G232450 Gossypium hirsutum HOM05D004726 ORTHO05D005986 4.3e-137 493.0 633 45.0
Gorai.001G267700 Gossypium raimondii HOM05D004726 ORTHO05D005986 6.9e-135 485.7 633 44.5
VMungo1383G3734 Vigna mungo HOM05D004726 ORTHO05D005986 2.2e-117 427.6 340 60.9
Zm00001eb144300 Zea mays HOM05D004726 ORTHO05D005986 4.8e-104 383.3 238 73.9
Cre12.g520450 Chlamydomonas reinhardtii HOM05D004726 ORTHO05D005986 1.3e-93 348.6 735 30.9
Zm00001eb344270 Zea mays HOM05D004726 ORTHO05D005986 7.2e-84 316.2 180 75.0
unitig_37.g12422 Utricularia gibba HOM05D004726 ORTHO05D005986 9.4e-84 315.8 359 45.7
Psat5g191640 Pisum sativum HOM05D004726 ORTHO05D005986 5.9e-78 296.6 178 75.8
MD04G1153000 Malus domestica HOM05D004726 ORTHO05D005986 2.2e-72 278.1 171 72.5
Zm00001eb350950 Zea mays HOM05D004726 ORTHO05D005986 3.5e-70 270.8 174 67.8
PRCOL_00002880 Prasinoderma coloniale HOM05D004726 ORTHO05D005986 3.6e-67 260.8 325 42.8
CBR_g52139 Chara braunii HOM05D000019 ORTHO05D000002 4.9e-64 250.4 257 45.1
Zm00001eb128230 Zea mays HOM05D004726 ORTHO05D005986 1.5e-57 228.8 120 80.0
Zm00001eb389090 Zea mays HOM05D004726 ORTHO05D005986 1.3e-56 225.7 120 78.3
PRCOL_00003197 Prasinoderma coloniale HOM05D004726 ORTHO05D005986 3.2e-55 221.1 342 37.7
Zm00001eb128240 Zea mays HOM05D004726 ORTHO05D005986 1.7e-53 215.3 123 78.0
Zm00001eb311070 Zea mays HOM05D004726 ORTHO05D005986 8.1e-51 206.5 107 80.4
MCO03G447 Micromonas commoda HOM05D004726 ORTHO05D005986 2.5e-44 184.9 343 34.1
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 3.0e-29 134.8 79 75.9
RcHm_v2.0_Chr2g0174051 Rosa chinensis HOM05D004726 ORTHO05D005986 3.0e-29 134.8 145 46.2
CAN.G1334.7 Capsicum annuum HOM05D004726 ORTHO05D005986 2.8e-27 128.3 71 76.1
TAR622G0354 Trochodendron aralioides HOM05D004726 ORTHO05D005986 2.8e-27 128.3 66 84.8
HanXRQChr17g0562941 Helianthus annuus HOM05D004726 ORTHO05D005986 8.1e-19 100.1 114 42.1
Psat2g089280 Pisum sativum HOM05D004726 ORTHO05D005986 1.8e-18 99.0 103 50.5
Psat1g035560 Pisum sativum HOM05D000639 ORTHO05D003485 6.9e-18 97.1 78 59.0
HanXRQChr13g0417601 Helianthus annuus HOM05D004726 ORTHO05D005986 3.4e-17 94.7 51 80.4
MD04G1152900 Malus domestica HOM05D004726 ORTHO05D005986 3.9e-13 81.3 46 69.6
Ciclev10001569m.g Citrus clementina HOM05D001570 ORTHO05D001566 1.9e-12 79.0 291 23.7
Psat0s3806g0040 Pisum sativum HOM05D001570 ORTHO05D001566 5.6e-12 77.4 275 23.6
TPR.G15852 Trifolium pratense HOM05D001570 ORTHO05D001566 1.6e-11 75.9 274 23.7
Pp3c14_17200 Physcomitrium patens HOM05D001570 ORTHO05D001566 2.8e-11 75.1 280 23.9
Migut.E01821 Erythranthe guttata HOM05D001570 ORTHO05D001566 4.8e-11 74.3 293 23.5
Lsat_1_v5_gn_7_31821 Lactuca sativa HOM05D001570 ORTHO05D001566 6.2e-11 73.9 274 23.7
Medtr5g089520 Medicago truncatula HOM05D001570 ORTHO05D001566 6.2e-11 73.9 281 23.5
Ca_06210_v3 Cicer arietinum L. HOM05D001570 ORTHO05D001566 2.4e-10 72.0 274 23.0
Cc00_g04420 Coffea canephora HOM05D001570 ORTHO05D001566 4.0e-10 71.2 284 22.5
Migut.N01850 Erythranthe guttata HOM05D001570 ORTHO05D001566 6.9e-10 70.5 242 24.4
vmacro17548 Vaccinium macrocarpon HOM05D004726 ORTHO05D005986 1.2e-09 69.7 60 53.3
PRCOL_00006929 Prasinoderma coloniale HOM05D001570 ORTHO05D022356 7.6e-09 67.0 267 24.7
TPR.G30445 Trifolium pratense HOM05D001570 ORTHO05D001566 7.6e-09 67.0 212 25.5
CAN.G1285.3 Capsicum annuum HOM05D004726 ORTHO05D005986 1.4e-07 62.8 46 58.7
PRCOL_00000161 Prasinoderma coloniale HOM05D001570 ORTHO05D001566 5.5e-07 60.8 259 24.3
PRCOL_00001236 Prasinoderma coloniale HOM05D001570 ORTHO05D001566 3.5e-06 58.2 244 23.8


User provided reference genes

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