Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 2.0e-214 748.8 371 100.0
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 3.6e-139 498.8 340 72.6
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.0e-125 454.1 306 73.9
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 7.5e-121 438.0 306 73.5
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 1.4e-103 380.6 343 56.0
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 2.4e-95 353.2 344 52.9
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 1.7e-93 347.1 348 52.9
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.2e-89 334.3 343 50.7
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 7.5e-89 331.6 343 51.0
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 1.7e-88 330.5 344 51.2
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.9e-87 327.0 344 49.1
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 3.2e-87 326.2 343 50.1
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 7.0e-87 325.1 343 49.0
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.7e-86 323.2 350 49.1
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 2.7e-86 323.2 344 49.4
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 4.6e-86 322.4 345 50.1
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.3e-85 320.9 349 49.0
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.7e-85 320.5 343 49.0
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 2.3e-85 320.1 344 48.5
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 5.0e-85 318.9 351 47.9
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 6.6e-85 318.5 339 50.1
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.1e-84 317.8 343 48.7
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.3e-84 316.2 345 50.7
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 4.3e-84 315.8 344 48.8
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 4.3e-84 315.8 354 48.9
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.2e-83 314.3 345 48.1
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 1.2e-83 314.3 351 47.0
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 1.1e-82 311.2 344 48.0
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 1.1e-82 311.2 354 46.9
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 4.0e-82 309.3 344 47.1
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.5e-81 307.4 342 48.8
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 4.4e-81 305.8 344 47.1
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 2.2e-80 303.5 343 49.6
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.1e-79 301.2 343 46.6
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.1e-79 301.2 343 46.6
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.4e-79 300.8 348 45.7
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.4e-79 300.8 348 45.7
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 2.4e-79 300.1 346 49.1
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 5.4e-79 298.9 348 45.4
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 1.6e-78 297.4 343 48.4
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 2.1e-78 297.0 330 50.9
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.7e-78 296.6 357 44.5
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 2.3e-77 293.5 279 53.0
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 3.0e-77 293.1 344 47.4
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 5.1e-77 292.4 345 45.2
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 8.6e-77 291.6 343 48.1
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.9e-76 290.4 344 45.6
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 2.5e-76 290.0 348 46.0
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.3e-76 289.7 345 47.0
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 4.3e-76 289.3 344 46.8
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 9.5e-76 288.1 344 45.9
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 9.5e-76 288.1 323 49.8
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 4.7e-75 285.8 346 45.7
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 4.7e-75 285.8 320 48.4
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 1.4e-74 284.3 343 43.4
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 1.8e-74 283.9 348 45.7
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.3e-74 283.5 344 43.6
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.1e-74 283.1 345 46.1
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 5.2e-74 282.3 344 43.9
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 6.8e-74 282.0 346 45.1
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 9.9e-73 278.1 346 46.5
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 2.9e-72 276.6 306 49.7
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.9e-72 275.8 344 42.4
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 4.9e-72 275.8 314 46.8
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 1.1e-71 274.6 344 45.1
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.4e-71 274.2 344 43.9
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 5.4e-71 272.3 331 43.8
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 1.2e-70 271.2 344 44.5
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 2.1e-70 270.4 344 43.6
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 4.6e-70 269.2 331 42.3
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 1.0e-69 268.1 324 44.1
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 3.0e-69 266.5 345 44.1
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 1.5e-68 264.2 345 43.8
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 3.3e-68 263.1 343 42.6
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 4.3e-68 262.7 344 42.7
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.6e-67 260.8 344 43.0
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 2.1e-67 260.4 343 41.4
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 2.8e-67 260.0 343 42.3
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 4.7e-67 259.2 346 40.8
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 4.7e-67 259.2 351 41.3
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 6.2e-67 258.8 346 39.3
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 1.1e-66 258.1 352 45.5
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 1.1e-66 258.1 345 43.5
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 1.4e-66 257.7 359 40.7
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.8e-66 257.3 344 41.3
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 3.1e-66 256.5 345 42.0
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 4.0e-66 256.1 346 42.5
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 5.2e-66 255.8 349 41.0
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 5.2e-66 255.8 343 41.4
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 6.9e-66 255.4 346 39.9
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.2e-65 254.6 340 44.7
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 3.4e-65 253.1 346 41.3
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 5.8e-65 252.3 325 44.3
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 5.8e-65 252.3 346 42.5
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 7.6e-65 251.9 344 41.0
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 1.7e-64 250.8 330 44.8
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 2.9e-64 250.0 346 39.0
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 2.9e-64 250.0 335 45.4
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 3.8e-64 249.6 381 38.8
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 3.8e-64 249.6 342 43.0
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 1.4e-63 247.7 346 38.4
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.9e-63 247.3 348 41.7
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 4.2e-63 246.1 348 41.4
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 9.3e-63 245.0 346 39.9
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 2.1e-62 243.8 343 40.8
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 2.7e-62 243.4 343 38.8
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 3.5e-62 243.0 327 42.2
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 2.3e-61 240.4 345 39.4
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 2.3e-61 240.4 343 39.7
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 3.9e-61 239.6 282 45.0
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 6.6e-61 238.8 319 42.3
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 8.7e-61 238.4 346 40.8
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 3.3e-60 236.5 350 39.4
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 3.3e-60 236.5 259 49.8
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.6e-59 234.2 300 44.0
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.6e-59 234.2 319 42.3
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 2.1e-59 233.8 281 44.5
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 2.8e-59 233.4 343 41.7
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 4.8e-59 232.6 351 40.2
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 6.2e-59 232.3 344 40.4
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 6.2e-59 232.3 278 47.1
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 3.1e-58 229.9 350 39.1
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 4.0e-58 229.6 326 38.3
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 5.3e-58 229.2 339 39.5
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 1.5e-57 227.6 351 39.3
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 3.4e-57 226.5 344 37.5
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.9e-55 220.7 282 40.8
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 4.2e-55 219.5 286 43.4
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 3.5e-54 216.5 342 38.6
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 3.0e-53 213.4 334 39.2
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 7.4e-52 208.8 347 38.0
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 8.1e-51 205.3 331 37.2
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 4.0e-50 203.0 198 53.5
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.9e-47 194.1 137 66.4
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 6.0e-46 189.1 344 34.3
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 6.7e-45 185.7 347 36.3
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.8e-43 180.3 137 62.8
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 4.8e-43 179.5 129 65.1
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.4e-41 173.3 243 39.9
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 1.0e-40 171.8 210 40.5
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 8.4e-40 168.7 255 39.2
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 7.1e-39 165.6 293 35.8
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 2.4e-34 150.6 319 34.2
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 1.1e-28 131.7 342 29.2
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 2.2e-24 117.5 103 54.4
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 6.3e-11 72.8 206 26.7
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 5.9e-09 66.2 202 25.7
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.6e-06 58.2 39 66.7


User provided reference genes

Program Settings