Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 8.9e-57 223.4 114 100.0
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.4e-30 135.6 86 79.1
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 4.1e-30 134.8 116 66.4
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 9.2e-30 133.7 116 63.8
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.2e-29 133.3 79 83.5
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.6e-29 132.9 111 65.8
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.7e-29 132.1 115 63.5
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 3.5e-29 131.7 116 62.1
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 3.5e-29 131.7 116 62.1
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 3.5e-29 131.7 113 61.1
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 3.5e-29 131.7 116 61.2
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 4.6e-29 131.3 110 67.3
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 4.6e-29 131.3 110 67.3
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 4.6e-29 131.3 110 67.3
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 6.0e-29 131.0 75 90.7
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 7.8e-29 130.6 116 63.8
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 1.0e-28 130.2 111 65.8
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 1.3e-28 129.8 116 65.5
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 1.7e-28 129.4 109 66.1
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 2.3e-28 129.0 126 60.3
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 3.0e-28 128.6 117 63.2
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 3.9e-28 128.3 111 64.0
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 3.9e-28 128.3 109 65.1
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 3.9e-28 128.3 111 64.0
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 3.9e-28 128.3 111 64.0
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 3.9e-28 128.3 111 65.8
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 5.1e-28 127.9 109 65.1
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 6.6e-28 127.5 79 81.0
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 6.6e-28 127.5 77 85.7
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 6.6e-28 127.5 112 65.2
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 8.6e-28 127.1 117 65.0
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 8.6e-28 127.1 112 67.9
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 1.1e-27 126.7 79 81.0
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 1.1e-27 126.7 79 81.0
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 1.1e-27 126.7 120 60.0
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.1e-27 126.7 113 64.6
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.5e-27 126.3 82 76.8
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 1.5e-27 126.3 123 59.3
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 1.9e-27 125.9 105 65.7
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 2.5e-27 125.6 116 62.9
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 2.5e-27 125.6 81 76.5
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 4.3e-27 124.8 114 64.0
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 4.3e-27 124.8 79 81.0
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 5.6e-27 124.4 111 64.9
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 5.6e-27 124.4 116 60.3
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 5.6e-27 124.4 95 68.4
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 5.6e-27 124.4 109 64.2
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 5.6e-27 124.4 114 61.4
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 7.3e-27 124.0 109 63.3
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 7.3e-27 124.0 103 64.1
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 7.3e-27 124.0 79 79.7
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 9.6e-27 123.6 75 81.3
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 9.6e-27 123.6 82 76.8
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 9.6e-27 123.6 113 63.7
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 1.2e-26 123.2 114 58.8
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 1.2e-26 123.2 113 62.8
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 1.6e-26 122.9 94 68.1
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.6e-26 122.9 111 64.9
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 2.1e-26 122.5 113 63.7
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 3.6e-26 121.7 77 79.2
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 3.6e-26 121.7 116 61.2
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 3.6e-26 121.7 111 60.4
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 3.6e-26 121.7 111 60.4
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 3.6e-26 121.7 106 61.3
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 3.6e-26 121.7 82 75.6
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 4.7e-26 121.3 112 60.7
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 6.2e-26 120.9 75 80.0
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 8.1e-26 120.6 109 60.6
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 8.1e-26 120.6 103 65.0
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 8.1e-26 120.6 84 69.0
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 8.1e-26 120.6 79 77.2
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.1e-25 120.2 76 77.6
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.1e-25 120.2 96 65.6
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.4e-25 119.8 75 78.7
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.4e-25 119.8 75 78.7
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 1.4e-25 119.8 75 78.7
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 1.4e-25 119.8 79 72.2
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 1.8e-25 119.4 109 58.7
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 1.8e-25 119.4 111 59.5
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 1.8e-25 119.4 112 58.0
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 2.4e-25 119.0 110 60.0
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 5.2e-25 117.9 76 77.6
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 5.2e-25 117.9 75 74.7
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 5.2e-25 117.9 77 74.0
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 8.9e-25 117.1 80 73.8
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 8.9e-25 117.1 115 53.9
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 1.2e-24 116.7 75 74.7
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 1.2e-24 116.7 116 56.0
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.2e-24 116.7 94 63.8
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.2e-24 116.7 94 63.8
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 1.5e-24 116.3 114 57.0
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 2.0e-24 115.9 80 72.5
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 2.0e-24 115.9 114 57.0
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 2.0e-24 115.9 107 57.0
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 2.6e-24 115.5 75 74.7
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 3.4e-24 115.2 108 63.9
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 5.8e-24 114.4 131 53.4
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 5.8e-24 114.4 116 58.6
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 7.6e-24 114.0 90 67.8
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 7.6e-24 114.0 80 71.2
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 9.9e-24 113.6 87 65.5
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 9.9e-24 113.6 120 55.8
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.3e-23 113.2 78 74.4
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 1.3e-23 113.2 114 55.3
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 2.2e-23 112.5 111 55.0
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 4.9e-23 111.3 74 74.3
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 4.9e-23 111.3 108 53.7
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 6.4e-23 110.9 73 76.7
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 1.1e-22 110.2 79 69.6
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.1e-22 110.2 79 69.6
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 5.4e-22 107.8 74 73.0
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 2.7e-21 105.5 123 52.8
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.7e-21 105.5 64 81.2
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.7e-20 102.8 98 56.1
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 2.3e-20 102.4 75 68.0
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 6.6e-20 100.9 73 68.5
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 6.6e-20 100.9 64 76.6
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.9e-19 99.4 105 54.3
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 2.5e-19 99.0 73 64.4
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 3.3e-19 98.6 107 55.1
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 5.6e-19 97.8 95 55.8
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.3e-18 96.7 64 78.1
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 2.4e-17 92.4 90 55.6
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 1.2e-16 90.1 97 54.6
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 1.3e-15 86.7 78 61.5
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 2.2e-15 85.9 59 71.2
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 8.4e-15 84.0 72 65.3
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 1.4e-14 83.2 83 55.4
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 9.3e-14 80.5 95 51.6
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 1.2e-13 80.1 73 57.5
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.7e-13 79.0 49 79.6
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 4.6e-13 78.2 45 80.0
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.8e-12 76.3 91 50.5
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 3.6e-10 68.6 85 51.8
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 3.6e-10 68.6 47 72.3
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 8.1e-10 67.4 132 42.4
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 7.6e-08 60.8 75 40.0
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 1.1e-06 57.0 85 38.8


User provided reference genes

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