Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 4479.9 2254 100.0
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 3439.4 2193 79.3
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 3434.4 2193 79.2
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 3055.0 2206 70.3
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2847.4 2219 66.8
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2614.3 2232 62.5
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2576.2 2233 61.5
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2555.4 2226 60.6
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2553.1 2224 61.0
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2548.9 2229 60.9
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2529.6 2241 60.3
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2518.4 2233 60.6
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2515.0 2232 59.9
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2510.7 2227 60.5
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2495.3 2232 59.4
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2490.3 2236 59.5
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2478.7 2229 58.6
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2473.4 2223 58.8
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2472.2 2229 58.4
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2469.5 2255 59.0
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2467.6 2221 59.7
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2461.0 2231 58.6
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2461.0 2223 58.6
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2457.6 2207 58.7
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2455.2 2243 58.7
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2454.9 2233 58.7
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2438.7 2240 58.8
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2429.1 2246 58.6
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2423.7 2217 58.7
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2419.0 2217 58.8
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2394.0 2246 57.6
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2393.2 2227 57.3
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2380.1 2231 57.6
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2379.0 2226 57.9
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2373.6 2226 58.0
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2370.5 2235 56.6
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2359.7 2229 56.3
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2357.8 2229 57.5
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2357.0 2246 56.7
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2355.5 2238 57.4
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2354.7 2227 56.4
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2351.2 2227 57.4
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2348.5 2226 57.1
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2347.4 2216 56.5
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2343.9 2226 57.1
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2340.5 2216 56.9
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2338.9 2225 56.6
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2334.7 2245 56.9
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2322.4 2236 56.9
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2319.7 2227 56.4
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2309.6 2223 56.9
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2304.2 2223 55.5
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2301.2 2267 55.8
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2299.6 2230 56.5
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2298.9 2232 55.9
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2293.5 2213 56.3
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2289.2 2228 56.3
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2288.8 2242 56.5
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2285.8 2220 56.5
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2278.8 2219 56.2
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2276.5 2227 56.4
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2274.2 2203 55.9
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2269.2 2236 55.1
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2264.6 2215 55.7
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2262.3 2225 56.0
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2257.6 2224 55.4
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2254.6 2224 54.9
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2249.6 2210 56.0
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2249.2 2209 55.5
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2238.4 2225 54.8
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2238.4 2201 55.4
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2238.4 2201 55.4
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2237.6 2211 55.5
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2232.2 2205 55.0
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2232.2 2205 55.0
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2219.9 2211 55.2
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2147.1 2213 54.0
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2118.6 2205 53.3
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2088.9 2040 56.0
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2086.2 1883 59.3
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2074.3 1828 60.2
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2057.3 2243 50.6
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2057.0 1818 60.5
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2051.6 1825 59.8
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2051.2 2324 49.8
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2038.1 2307 49.5
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 2035.8 2214 51.2
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 1919.4 1708 59.8
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1815.4 2205 49.0
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1768.1 2385 44.2
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1718.4 1423 63.7
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1533.9 1698 50.3
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1426.4 2359 39.4
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1416.0 2363 38.9
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1360.5 1359 55.9
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1265.4 2246 36.9
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1259.2 2180 38.5
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1228.8 1128 59.4
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1211.1 1024 61.2
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1115.5 944 61.9
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1109.4 1198 52.5
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 2.5e-296 1023.5 1402 44.0
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 4.8e-287 992.6 1060 52.1
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 1.7e-255 887.9 785 61.0
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 8.2e-255 885.6 3048 27.4
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 3.4e-253 880.2 1018 50.1
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 1.5e-216 758.4 843 49.0
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 5.2e-209 733.4 736 54.1
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 2.9e-207 727.6 1352 36.8
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 2.4e-153 548.5 984 37.5
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 2.0e-147 528.9 2448 24.9
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 4.4e-107 394.8 440 48.0
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 4.0e-100 371.7 377 53.1
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 3.3e-78 298.9 331 48.9
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 3.2e-73 282.3 287 56.8
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.2e-67 263.8 314 45.9
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 6.6e-63 248.1 732 28.1
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 3.6e-61 242.3 326 42.9
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 2.1e-56 226.5 236 50.0
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 4.5e-51 208.8 177 66.1
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 4.2e-49 202.2 234 46.2
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 4.8e-45 188.7 282 40.1
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 3.0e-39 169.5 139 61.9
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.7e-34 153.7 233 39.1
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 8.5e-34 151.4 94 79.8
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 4.1e-28 132.5 171 40.9
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 6.9e-28 131.7 290 32.1
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 4.5e-27 129.0 108 56.5
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 2.3e-23 116.7 148 44.6
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 1.7e-21 110.5 107 57.9
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 1.7e-21 110.5 101 63.4
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 7.2e-17 95.1 808 21.2
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 2.2e-13 83.6 110 40.0


User provided reference genes

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