Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g02800 Beta vulgaris HOM05D007414 ORTHO05D009482 1.6e-255 885.6 438 100.0
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 1.5e-192 676.4 439 80.0
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 6.7e-161 571.2 373 78.0
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 5.7e-144 515.0 437 63.6
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 1.4e-142 510.4 329 79.9
GSVIVG01013487001 Vitis vinifera HOM05D007414 ORTHO05D009482 5.7e-136 488.4 456 58.6
CiPaw.13G013700 Carya illinoinensis HOM05D007414 ORTHO05D009482 2.1e-130 469.9 459 56.9
Hma1.2p1_1202F.1_g266840 Hydrangea macrophylla HOM05D007414 ORTHO05D009482 2.3e-129 466.5 464 56.0
Hund13359 Selenicereus undatus HOM05D007414 ORTHO05D009482 3.9e-129 465.7 407 60.9
Nn7g36686 Nelumbo nucifera HOM05D007414 ORTHO05D009482 1.1e-128 464.2 427 59.0
TAR623G0974 Trochodendron aralioides HOM05D007414 ORTHO05D009482 1.1e-128 464.2 454 57.5
vmacro12698 Vaccinium macrocarpon HOM05D007414 ORTHO05D009482 1.1e-128 464.2 471 54.8
QL04p017831 Quercus lobata HOM05D007414 ORTHO05D009482 4.4e-128 462.2 470 54.9
MD02G1287000 Malus domestica HOM05D007414 ORTHO05D009482 9.7e-128 461.1 453 57.4
Duzib114G0511 Durio zibethinus HOM05D007414 ORTHO05D009482 6.3e-127 458.4 434 56.7
Atru.chr12.1333 Acer truncatum HOM05D007414 ORTHO05D009482 3.1e-126 456.1 460 55.2
COL.COLO4_20658 Corchorus olitorius HOM05D007414 ORTHO05D009482 5.3e-126 455.3 433 56.6
Dinv22037 Davidia involucrata HOM05D007414 ORTHO05D009482 1.2e-125 454.1 457 55.8
Solyc01g096400.4 Solanum lycopersicum HOM05D007414 ORTHO05D009482 4.5e-125 452.2 459 54.5
Thecc.10G154500 Theobroma cacao HOM05D007414 ORTHO05D009482 4.5e-125 452.2 463 54.2
Sopen01g040130 Solanum pennellii HOM05D007414 ORTHO05D009482 1.3e-124 450.7 463 54.0
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 1.3e-124 450.7 456 54.2
Actinidia02265 Actinidia chinensis HOM05D007414 ORTHO05D009482 6.5e-124 448.4 429 58.7
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 8.5e-124 448.0 455 55.6
CANSAT56G3550 Cannabis sativa HOM05D007414 ORTHO05D009482 1.5e-123 447.2 447 55.7
PGR031G2549 Punica granatum HOM05D007414 ORTHO05D009482 1.9e-123 446.8 460 55.4
Gohir.D10G192600 Gossypium hirsutum HOM05D007414 ORTHO05D009482 3.2e-123 446.0 443 55.8
Medtr3g014680 Medicago truncatula HOM05D007414 ORTHO05D009482 3.2e-123 446.0 435 56.3
VMungo1080G1369 Vigna mungo HOM05D007414 ORTHO05D009482 3.2e-123 446.0 430 55.8
RcHm_v2.0_Chr1g0324301 Rosa chinensis HOM05D007414 ORTHO05D009482 4.2e-123 445.7 422 58.1
Glyma.04G137000 Glycine max HOM05D007414 ORTHO05D009482 5.5e-123 445.3 438 55.3
Lalb_Chr25g0282101 Lupinus albus HOM05D007414 ORTHO05D009482 5.5e-123 445.3 410 56.6
Gohir.A10G185400 Gossypium hirsutum HOM05D007414 ORTHO05D009482 9.4e-123 444.5 458 54.6
Gorai.011G215300 Gossypium raimondii HOM05D007414 ORTHO05D009482 1.6e-122 443.7 439 55.8
Lj3g0021878 Lotus japonicus HOM05D007414 ORTHO05D009482 2.7e-122 443.0 413 56.7
Nitab4.5_0004955g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 4.7e-122 442.2 462 54.5
Glyma.11G155300 Glycine max HOM05D007414 ORTHO05D009482 1.8e-121 440.3 450 54.0
CSS0022385 Camellia sinensis var. sinensis HOM05D007414 ORTHO05D009482 2.3e-121 439.9 415 57.1
Cc02_g30210 Coffea canephora HOM05D007414 ORTHO05D009482 3.0e-121 439.5 453 53.9
Phvul.005G026400 Phaseolus vulgaris HOM05D007414 ORTHO05D009482 3.9e-121 439.1 453 54.5
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 5.2e-121 438.7 422 56.9
FAN06G2659 Fragaria x ananassa HOM05D007414 ORTHO05D009482 5.2e-121 438.7 422 56.9
Eucgr.G03234 Eucalyptus grandis HOM05D007414 ORTHO05D009482 1.1e-120 437.6 414 57.2
FAN03G2686 Fragaria x ananassa HOM05D007414 ORTHO05D009482 1.1e-120 437.6 422 56.6
Gorai.010G216100 Gossypium raimondii HOM05D007414 ORTHO05D009482 4.4e-120 435.6 435 55.2
CAN.G1045.37 Capsicum annuum HOM05D007414 ORTHO05D009482 5.7e-120 435.3 456 52.6
CsaV3_5G024500 Cucumis sativus L. HOM05D007414 ORTHO05D009482 1.3e-119 434.1 433 55.4
Sabra01G0020000 Salix brachista HOM05D007414 ORTHO05D009482 1.7e-119 433.7 408 58.1
FAN10G2712 Fragaria x ananassa HOM05D007414 ORTHO05D009482 2.2e-119 433.3 422 56.2
Rhsim01G0124300 Rhododendron simsii HOM05D007414 ORTHO05D009482 3.7e-119 432.6 385 60.3
arahy.Tifrunner.gnm1.ann1.GMDI7B Arachis hypogaea HOM05D007414 ORTHO05D009482 8.2e-119 431.4 428 55.1
MSTRG.20514 Avicennia marina HOM05D007414 ORTHO05D009482 8.2e-119 431.4 425 57.2
arahy.Tifrunner.gnm1.ann1.XZAR1L Arachis hypogaea HOM05D007414 ORTHO05D009482 7.0e-118 428.3 438 53.7
Nitab4.5_0000307g0260 Nicotiana tabacum HOM05D007414 ORTHO05D009482 7.0e-118 428.3 457 54.0
Ciclev10028543m.g Citrus clementina HOM05D007414 ORTHO05D009482 9.1e-118 427.9 437 54.5
Potri.001G027600 Populus trichocarpa HOM05D007414 ORTHO05D009482 3.5e-117 426.0 408 56.6
Lsat_1_v5_gn_4_29901 Lactuca sativa HOM05D007414 ORTHO05D009482 1.0e-116 424.5 448 53.3
TWI15G0498 Tripterygium wilfordii HOM05D007414 ORTHO05D009482 2.2e-116 423.3 415 55.9
HanXRQChr16g0525321 Helianthus annuus HOM05D007414 ORTHO05D009482 3.8e-116 422.5 447 53.0
DCAR_031835 Daucus carota HOM05D007414 ORTHO05D009482 3.2e-115 419.5 450 53.1
ClCG01G007530 Citrullus lanatus HOM05D007414 ORTHO05D009482 5.5e-115 418.7 426 54.0
ECA234G1800 Erigeron canadensis HOM05D007414 ORTHO05D009482 3.6e-114 416.0 446 53.8
MELO3C005149.2 Cucumis melo HOM05D007414 ORTHO05D009482 8.8e-113 411.4 448 51.8
PSO384G0147 Papaver somniferum HOM05D007414 ORTHO05D009482 9.1e-110 401.4 428 52.3
PSO339G0457 Papaver somniferum HOM05D007414 ORTHO05D009482 2.0e-109 400.2 428 52.1
Sed0006433 Sechium edule HOM05D007414 ORTHO05D009482 2.7e-106 389.8 358 56.1
Gohir.D06G184800 Gossypium hirsutum HOM05D007414 ORTHO05D009482 3.6e-106 389.4 373 56.6
Gohir.A06G174800 Gossypium hirsutum HOM05D007414 ORTHO05D009482 5.7e-104 382.1 373 55.5
Aqoxy1G00360 Aquilegia oxysepala HOM05D007414 ORTHO05D009482 1.1e-102 377.9 427 51.1
Haze_03038 Corylus avellana HOM05D007414 ORTHO05D009482 1.8e-102 377.1 458 49.8
Manes.15G192920 Manihot esculenta HOM05D007414 ORTHO05D009482 1.8e-102 377.1 429 51.0
Nn7g36678 Nelumbo nucifera HOM05D007414 ORTHO05D009482 1.8e-102 377.1 445 50.8
ATR0745G014 Amborella trichopoda HOM05D007414 ORTHO05D009482 2.0e-101 373.6 410 49.3
THA.LOC104826727 Tarenaya hassleriana HOM05D007414 ORTHO05D009482 1.3e-100 370.9 403 51.4
Peaxi162Scf00767g00524 Petunia axillaris HOM05D007414 ORTHO05D009482 2.9e-100 369.8 419 50.1
Potri.003G196200 Populus trichocarpa HOM05D007414 ORTHO05D009482 5.2e-97 359.0 452 46.7
Psat5g222240 Pisum sativum HOM05D007414 ORTHO05D009482 1.1e-86 324.7 320 53.1
Dinv32026 Davidia involucrata HOM05D007414 ORTHO05D009482 9.5e-83 311.6 341 51.3
SEGI_40936 Sequoiadendron giganteum HOM05D007414 ORTHO05D009482 8.3e-79 298.5 425 42.6
Prupe.2G036300 Prunus persica HOM05D007414 ORTHO05D009482 1.4e-78 297.7 315 53.0
Migut.O00949 Erythranthe guttata HOM05D007414 ORTHO05D009482 8.1e-66 255.4 273 53.1
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 6.4e-63 245.7 484 35.3
MBI19_g25612_MAGBIO Magnolia biondii HOM05D007414 ORTHO05D009482 7.1e-62 242.3 233 56.2
Mapoly0007s0139 Marchantia polymorpha HOM05D007414 ORTHO05D009482 3.6e-58 229.9 468 34.8
Pp3c11_910 Physcomitrium patens HOM05D007414 ORTHO05D009482 7.6e-56 222.2 422 36.3
Zm00001eb128490 Zea mays HOM05D007414 ORTHO05D009482 3.6e-50 203.4 206 52.9
Os01g0272800 Oryza sativa ssp. japonica HOM05D007414 ORTHO05D009482 1.1e-46 191.8 245 48.2
DCAR_000332 Daucus carota HOM05D007414 ORTHO05D009482 1.8e-41 174.5 163 57.7
Migut.B01233 Erythranthe guttata HOM05D007414 ORTHO05D009482 1.5e-35 154.8 119 65.5
TPR.G1409 Trifolium pratense HOM05D007414 ORTHO05D009482 5.7e-35 152.9 153 55.6
Nitab4.5_0008639g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 1.3e-31 141.7 121 61.2
MCO02G191 Micromonas commoda HOM05D007414 ORTHO05D009482 5.5e-14 83.2 362 25.4
Lsat_1_v5_gn_0_2021 Lactuca sativa HOM05D007414 ORTHO05D009482 3.9e-12 77.0 77 48.1
PRCOL_00005884 Prasinoderma coloniale HOM05D007414 ORTHO05D009482 6.7e-12 76.3 296 28.4
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 3.7e-10 70.5 406 23.2
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 4.8e-10 70.1 381 24.9
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 8.2e-10 69.3 377 24.9
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 1.1e-09 68.9 426 25.1
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 1.4e-09 68.6 374 23.3
Lsat_1_v5_gn_3_3821 Lactuca sativa HOM05D007414 ORTHO05D009482 1.4e-09 68.6 51 60.8
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 1.4e-09 68.6 415 23.4
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 2.4e-09 67.8 454 23.6
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 3.1e-09 67.4 408 23.5
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 4.1e-09 67.0 402 23.4
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 4.1e-09 67.0 386 23.6
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 5.3e-09 66.6 402 23.4
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 7.0e-09 66.2 283 25.1
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 7.0e-09 66.2 404 24.0
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 9.1e-09 65.9 409 24.2
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 9.1e-09 65.9 432 24.3
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 1.2e-08 65.5 373 22.8
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 1.2e-08 65.5 432 24.3
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 2.0e-08 64.7 444 23.2
SEGI_36011 Sequoiadendron giganteum HOM05D007414 ORTHO05D009482 2.0e-08 64.7 71 49.3
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 3.5e-08 63.9 410 23.4
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 3.5e-08 63.9 403 24.3
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 4.5e-08 63.5 406 23.9
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 4.5e-08 63.5 288 25.0
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 4.5e-08 63.5 288 24.7
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 4.5e-08 63.5 291 26.8
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 5.9e-08 63.2 293 24.9
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 5.9e-08 63.2 371 23.2
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 5.9e-08 63.2 286 25.9
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 7.7e-08 62.8 386 23.3
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 7.7e-08 62.8 449 23.8
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 1.0e-07 62.4 299 25.4
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.3e-07 62.0 369 22.8
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 1.3e-07 62.0 402 22.6
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 1.3e-07 62.0 284 25.4
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.7e-07 61.6 370 23.8
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 2.2e-07 61.2 296 24.3
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 2.2e-07 61.2 449 22.5
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 2.2e-07 61.2 403 24.1
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 2.9e-07 60.8 373 23.9
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 2.9e-07 60.8 410 24.4
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 2.9e-07 60.8 374 24.1
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 5.0e-07 60.1 397 23.4
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 5.0e-07 60.1 399 22.1
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 5.0e-07 60.1 299 25.4
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 5.0e-07 60.1 294 24.1
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 5.0e-07 60.1 370 23.0
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 6.5e-07 59.7 288 26.0
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 6.5e-07 59.7 394 22.6
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 6.5e-07 59.7 429 22.4
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 8.5e-07 59.3 437 24.0
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 8.5e-07 59.3 439 23.5
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 8.5e-07 59.3 380 22.4
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 8.5e-07 59.3 281 24.2
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 8.5e-07 59.3 299 25.1
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.5e-06 58.5 367 22.3
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 1.9e-06 58.2 400 23.2
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 2.5e-06 57.8 438 23.1
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 2.5e-06 57.8 405 21.7
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 2.5e-06 57.8 408 24.0
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 3.2e-06 57.4 292 25.3
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 3.2e-06 57.4 292 24.0
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 4.2e-06 57.0 287 25.1
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 4.2e-06 57.0 287 25.1
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 5.5e-06 56.6 364 23.6
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 7.2e-06 56.2 378 22.0
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 7.2e-06 56.2 413 22.8
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 7.2e-06 56.2 366 23.0
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 7.2e-06 56.2 299 24.4
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 9.4e-06 55.8 292 24.3
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 9.4e-06 55.8 410 22.9


User provided reference genes

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