Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 5.7e-228 793.9 395 100.0
AUR62031740 Chenopodium quinoa HOM05D007266 ORTHO05D005982 2.3e-112 409.8 412 58.3
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 3.8e-107 392.5 389 57.6
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 1.0e-88 331.3 337 59.1
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 6.3e-86 322.0 386 50.8
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 1.3e-62 244.6 416 43.0
Sc11g0006320 Simmondsia chinensis HOM05D007266 ORTHO05D005982 5.3e-24 116.3 182 41.2
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 9.0e-24 115.5 376 32.7
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 1.2e-23 115.2 375 30.1
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.4e-23 113.6 393 30.5
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 1.0e-22 112.1 354 33.3
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.3e-22 111.7 393 30.0
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 1.7e-22 111.3 371 30.7
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.7e-22 111.3 394 31.7
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 2.9e-22 110.5 342 29.5
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 3.8e-22 110.2 348 33.6
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 8.4e-22 109.0 384 30.5
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 8.4e-22 109.0 364 32.4
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.9e-21 107.8 393 30.0
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 2.5e-21 107.5 393 29.5
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 3.2e-21 107.1 409 29.6
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 4.2e-21 106.7 346 30.3
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 7.1e-21 105.9 350 32.6
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 1.6e-20 104.8 362 30.4
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 6.1e-20 102.8 356 31.7
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 1.3e-19 101.7 393 31.8
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 1.3e-19 101.7 403 31.3
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 3.0e-19 100.5 415 27.5
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 5.1e-19 99.8 337 32.3
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 5.1e-19 99.8 406 29.1
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 6.7e-19 99.4 342 31.6
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 1.1e-18 98.6 401 27.9
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 1.1e-18 98.6 355 29.9
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 5.7e-18 96.3 340 29.7
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 1.3e-17 95.1 328 27.7
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 1.3e-17 95.1 328 27.7
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 1.3e-17 95.1 334 30.8
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 3.7e-17 93.6 415 27.2
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 3.1e-16 90.5 391 27.9
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 6.9e-16 89.4 284 30.6
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 1.5e-15 88.2 487 25.5
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 2.0e-15 87.8 342 29.5
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 1.7e-14 84.7 332 29.5
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 6.5e-14 82.8 330 26.1
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 8.5e-14 82.4 335 25.7
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 8.5e-14 82.4 191 34.0
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 1.9e-13 81.3 396 26.5
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 1.9e-13 81.3 335 25.4
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 5.5e-13 79.7 329 27.7
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 7.2e-13 79.3 326 26.1
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 1.2e-12 78.6 332 29.5
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 2.1e-12 77.8 393 27.0
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 2.7e-12 77.4 385 27.5
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 3.6e-12 77.0 396 26.5
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 4.6e-12 76.6 392 25.5
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 4.6e-12 76.6 311 30.5
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 4.6e-12 76.6 291 28.2
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 6.1e-12 76.3 149 36.2
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 7.9e-12 75.9 337 27.3
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.0e-11 75.5 338 26.9
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 1.0e-11 75.5 383 26.9
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 2.3e-11 74.3 386 27.5
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 6.7e-11 72.8 328 25.3
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 8.8e-11 72.4 327 29.1
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 8.8e-11 72.4 384 26.0
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 8.8e-11 72.4 326 25.5
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 1.1e-10 72.0 286 30.4
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 2.0e-10 71.2 405 26.9
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 3.3e-10 70.5 337 28.5
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 1.7e-09 68.2 98 44.9
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 1.7e-09 68.2 114 36.8
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 1.7e-09 68.2 131 36.6
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 1.7e-09 68.2 131 36.6
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 2.8e-09 67.4 107 38.3
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 2.8e-09 67.4 339 28.0
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 6.3e-09 66.2 143 35.0
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 8.2e-09 65.9 404 25.7
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 8.2e-09 65.9 355 26.8
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 1.8e-08 64.7 310 26.5
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.8e-08 64.7 384 24.7
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 1.8e-08 64.7 173 34.1
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 2.4e-08 64.3 165 32.7
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 2.4e-08 64.3 200 34.5
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 3.1e-08 63.9 193 34.2
QL04p021455 Quercus lobata HOM05D007266 ORTHO05D005982 3.1e-08 63.9 193 35.2
QL07p029255 Quercus lobata HOM05D007266 ORTHO05D005982 3.1e-08 63.9 193 35.2
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 4.1e-08 63.5 388 24.7
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 5.3e-08 63.2 103 38.8
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 1.2e-07 62.0 101 39.6
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 1.5e-07 61.6 100 38.0
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 1.5e-07 61.6 403 26.3
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 2.0e-07 61.2 124 35.5
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 2.6e-07 60.8 338 24.9
EL10Ac2g02826 Beta vulgaris HOM05D004414 ORTHO05D001824 2.6e-07 60.8 143 30.8
TAR633G1473 Trochodendron aralioides HOM05D004414 ORTHO05D001824 2.6e-07 60.8 194 30.4
CSS0040931 Camellia sinensis var. sinensis HOM05D007266 ORTHO05D005982 3.4e-07 60.5 222 30.6
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 5.9e-07 59.7 113 37.2
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 7.7e-07 59.3 113 37.2
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 7.7e-07 59.3 333 27.6
Sed0007735 Sechium edule HOM05D004414 ORTHO05D001824 1.0e-06 58.9 150 29.3
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 1.3e-06 58.5 100 37.0
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 1.3e-06 58.5 102 37.3
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 1.7e-06 58.2 246 28.5
SGA_v2.0_scaffold124G33637 Striga asiatica HOM05D004414 ORTHO05D001824 1.7e-06 58.2 105 40.0
CANSAT56G3557 Cannabis sativa HOM05D004414 ORTHO05D001824 2.2e-06 57.8 210 29.5
CDE12G0797 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 2.2e-06 57.8 110 30.0
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 2.9e-06 57.4 342 27.2
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 2.9e-06 57.4 103 37.9
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 2.9e-06 57.4 103 37.9
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 2.9e-06 57.4 103 37.9
Actinidia06255 Actinidia chinensis HOM05D004414 ORTHO05D001824 3.8e-06 57.0 142 33.1
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 3.8e-06 57.0 128 37.5
arahy.Tifrunner.gnm1.ann1.9W20Y7 Arachis hypogaea HOM05D003662 ORTHO05D001824 3.8e-06 57.0 100 37.0
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 5.0e-06 56.6 255 28.2
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 5.0e-06 56.6 255 28.2
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 5.0e-06 56.6 218 28.9
Psat1g216760 Pisum sativum HOM05D003662 ORTHO05D001824 5.0e-06 56.6 95 40.0
TWI23G0811 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 5.0e-06 56.6 125 36.0
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 8.5e-06 55.8 99 38.4
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 8.5e-06 55.8 185 29.2
Hma1.2p1_1251F.1_g270410 Hydrangea macrophylla HOM05D004414 ORTHO05D001824 8.5e-06 55.8 124 32.3
MD07G1036600 Malus domestica HOM05D004414 ORTHO05D001824 8.5e-06 55.8 156 28.8
PSO541G6545 Papaver somniferum HOM05D003662 ORTHO05D001824 8.5e-06 55.8 223 27.4
SEGI_03595 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 8.5e-06 55.8 146 32.9
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 8.5e-06 55.8 336 27.4
TPR.G13626 Trifolium pratense HOM05D003662 ORTHO05D001824 8.5e-06 55.8 132 34.1


User provided reference genes

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