Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 1.9e-74 282.3 134 100.0
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 4.7e-49 198.0 135 73.3
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 2.0e-44 182.6 136 69.1
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 3.8e-43 178.3 169 58.0
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 3.6e-33 145.2 141 53.9
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 3.1e-32 142.1 135 55.6
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 8.9e-32 140.6 141 53.2
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 8.9e-32 140.6 138 55.8
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 4.4e-31 138.3 137 56.2
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 4.4e-31 138.3 134 53.0
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 9.8e-31 137.1 142 51.4
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 1.7e-30 136.3 135 55.6
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 2.2e-30 136.0 125 56.8
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 2.9e-30 135.6 118 60.2
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 4.9e-30 134.8 119 57.1
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 6.4e-30 134.4 123 57.7
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 6.4e-30 134.4 143 51.0
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 6.4e-30 134.4 143 51.0
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 8.3e-30 134.0 106 64.2
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 1.4e-29 133.3 139 52.5
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 1.4e-29 133.3 139 52.5
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 1.9e-29 132.9 143 50.3
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 4.1e-29 131.7 124 58.1
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 4.1e-29 131.7 119 57.1
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 5.4e-29 131.3 139 54.0
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 5.4e-29 131.3 137 51.8
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 7.0e-29 131.0 135 49.6
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 9.2e-29 130.6 120 54.2
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 9.2e-29 130.6 139 50.4
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 1.2e-28 130.2 112 59.8
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.2e-28 130.2 112 59.8
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 2.0e-28 129.4 127 55.9
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 2.0e-28 129.4 146 50.0
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 2.7e-28 129.0 117 57.3
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 3.5e-28 128.6 136 51.5
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 3.5e-28 128.6 118 55.1
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 3.5e-28 128.6 136 52.9
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 4.6e-28 128.3 126 51.6
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 6.0e-28 127.9 122 54.9
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 6.0e-28 127.9 129 56.6
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 6.0e-28 127.9 146 49.3
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 6.0e-28 127.9 142 50.0
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 6.0e-28 127.9 123 55.3
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 6.0e-28 127.9 137 51.8
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 6.0e-28 127.9 137 51.1
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 6.0e-28 127.9 104 60.6
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 7.8e-28 127.5 139 50.4
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 7.8e-28 127.5 124 54.0
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 7.8e-28 127.5 127 52.8
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 7.8e-28 127.5 120 54.2
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 7.8e-28 127.5 83 69.9
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 7.8e-28 127.5 137 50.4
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 7.8e-28 127.5 122 56.6
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 1.0e-27 127.1 148 48.6
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.0e-27 127.1 127 50.4
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 1.7e-27 126.3 116 54.3
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.7e-27 126.3 119 55.5
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.7e-27 126.3 112 58.0
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 2.3e-27 125.9 141 50.4
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 2.3e-27 125.9 124 51.6
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 2.3e-27 125.9 128 50.0
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 3.0e-27 125.6 136 52.2
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 3.0e-27 125.6 120 54.2
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 3.9e-27 125.2 136 50.0
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 3.9e-27 125.2 139 49.6
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 3.9e-27 125.2 117 57.3
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 5.0e-27 124.8 121 54.5
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 5.0e-27 124.8 124 50.8
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 5.0e-27 124.8 118 55.9
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 8.6e-27 124.0 119 55.5
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 8.6e-27 124.0 119 55.5
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 8.6e-27 124.0 143 49.0
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 8.6e-27 124.0 115 53.9
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 1.9e-26 122.9 123 56.1
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 3.3e-26 122.1 117 55.6
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 5.6e-26 121.3 105 58.1
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 9.5e-26 120.6 131 51.9
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 9.5e-26 120.6 130 49.2
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 1.2e-25 120.2 113 58.4
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.6e-25 118.6 122 47.5
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 3.6e-25 118.6 123 53.7
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 4.7e-25 118.2 127 52.0
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 6.2e-25 117.9 96 61.5
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 6.2e-25 117.9 112 54.5
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 8.1e-25 117.5 128 50.8
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 1.1e-24 117.1 131 49.6
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 1.4e-24 116.7 134 49.3
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 1.8e-24 116.3 143 48.3
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 2.3e-24 115.9 111 53.2
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 2.3e-24 115.9 111 53.2
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 3.1e-24 115.5 100 59.0
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 3.1e-24 115.5 132 48.5
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 4.0e-24 115.2 111 53.2
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 4.0e-24 115.2 100 59.0
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 4.0e-24 115.2 111 55.9
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 4.0e-24 115.2 116 51.7
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 5.2e-24 114.8 129 52.7
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 1.2e-23 113.6 132 48.5
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.5e-23 113.2 119 47.9
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 1.5e-23 113.2 141 46.8
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 3.4e-23 112.1 131 47.3
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 5.8e-23 111.3 111 57.7
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.8e-23 111.3 112 48.2
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.3e-22 110.2 66 71.2
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 1.3e-22 110.2 121 52.9
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 2.9e-22 109.0 64 73.4
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 2.9e-22 109.0 124 47.6
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 4.9e-22 108.2 108 52.8
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 4.9e-22 108.2 132 48.5
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 6.4e-22 107.8 188 37.8
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 8.3e-22 107.5 125 49.6
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 1.1e-21 107.1 122 50.0
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 1.9e-21 106.3 80 61.2
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.9e-21 106.3 122 44.3
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 2.4e-21 105.9 98 51.0
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 3.2e-21 105.5 87 58.6
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.2e-20 103.6 60 75.0
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 2.1e-20 102.8 125 48.0
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 4.6e-20 101.7 125 48.8
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 6.6e-19 97.8 94 56.4
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.9e-18 96.3 60 66.7
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 3.3e-18 95.5 106 50.9
EL10Ac2g02749 Beta vulgaris HOM05D001327 ORTHO05D002270 9.5e-18 94.0 109 51.4
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 9.5e-18 94.0 65 63.1
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.2e-17 93.6 133 43.6
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 2.1e-17 92.8 90 56.7
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 6.2e-17 91.3 171 35.7
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 1.4e-16 90.1 51 74.5
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.4e-16 90.1 108 50.9
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 1.3e-14 83.6 94 46.8
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 1.7e-14 83.2 112 46.4
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 2.9e-14 82.4 52 65.4
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 3.7e-14 82.0 120 44.2
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 3.7e-14 82.0 90 53.3
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 3.7e-14 82.0 90 53.3
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 3.2e-13 79.0 54 57.4
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 9.2e-13 77.4 114 43.0
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 2.1e-12 76.3 50 60.0
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 5.1e-11 71.6 69 52.2
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 6.6e-11 71.2 49 55.1
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 1.1e-10 70.5 85 50.6
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 1.5e-10 70.1 56 57.1
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 5.2e-08 61.6 71 42.3
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 6.8e-08 61.2 104 43.3
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 8.9e-08 60.8 132 35.6
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 3.4e-07 58.9 33 78.8
Ah.15g093720 Amaranthus hybridus HOM05D000143 ORTHO05D000072 6.4e-06 54.7 26 88.5


User provided reference genes

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