Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 7.3e-215 750.4 399 100.0
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.8e-160 569.7 413 78.5
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 2.2e-150 536.2 408 70.3
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 2.5e-130 469.5 400 62.5
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 2.3e-115 419.9 404 61.4
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 4.3e-114 415.6 403 58.8
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 6.2e-113 411.8 398 58.3
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 1.8e-112 410.2 409 56.5
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 6.8e-112 408.3 428 54.7
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 5.8e-111 405.2 398 60.1
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 9.8e-111 404.4 420 58.6
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 2.2e-110 403.3 365 60.8
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 4.1e-109 399.1 401 60.3
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 9.2e-109 397.9 398 57.0
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 2.0e-108 396.7 384 57.8
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 1.0e-107 394.4 370 59.7
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 8.6e-107 391.3 390 57.2
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 1.1e-106 391.0 368 60.9
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 1.1e-106 391.0 396 57.6
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 1.1e-106 391.0 390 57.2
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 1.5e-106 390.6 286 68.9
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 2.5e-106 389.8 376 57.2
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 1.6e-105 387.1 416 54.1
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 2.8e-105 386.3 395 57.0
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 1.4e-104 384.0 409 57.2
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 1.4e-104 384.0 378 57.7
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 5.2e-104 382.1 356 59.0
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 5.2e-104 382.1 366 59.8
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 6.8e-104 381.7 376 57.2
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 1.2e-103 380.9 267 70.0
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 2.6e-103 379.8 397 56.7
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 3.4e-103 379.4 397 57.4
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 3.4e-103 379.4 307 63.8
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 7.5e-103 378.3 373 57.9
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 7.5e-103 378.3 363 58.4
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 9.8e-103 377.9 367 57.5
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 9.8e-103 377.9 363 58.1
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.3e-102 377.5 383 56.9
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 1.7e-102 377.1 367 58.6
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 1.7e-102 377.1 386 55.4
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.7e-102 377.1 382 57.1
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 2.9e-102 376.3 367 57.2
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 4.9e-102 375.6 346 58.7
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 6.4e-102 375.2 357 57.1
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 6.4e-102 375.2 236 76.7
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 8.3e-102 374.8 250 75.2
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 8.3e-102 374.8 250 75.2
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 1.4e-101 374.0 244 74.2
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 1.9e-101 373.6 327 61.2
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 1.9e-101 373.6 244 74.6
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 2.4e-101 373.2 247 76.1
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 3.2e-101 372.9 275 73.1
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 3.2e-101 372.9 257 72.8
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 4.1e-101 372.5 253 75.5
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 5.4e-101 372.1 244 74.6
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 5.4e-101 372.1 348 58.3
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 5.4e-101 372.1 235 78.7
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 7.1e-101 371.7 233 76.8
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 9.2e-101 371.3 368 57.6
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 1.2e-100 370.9 244 73.8
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 1.2e-100 370.9 244 73.8
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 1.2e-100 370.9 244 73.8
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.6e-100 370.5 351 58.1
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 2.1e-100 370.2 335 60.3
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 2.1e-100 370.2 287 66.2
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 2.7e-100 369.8 243 74.1
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 2.7e-100 369.8 388 53.6
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 4.6e-100 369.0 282 67.4
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 6.0e-100 368.6 296 67.2
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 1.0e-99 367.9 333 61.3
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.0e-99 367.9 381 54.1
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 1.0e-99 367.9 372 56.7
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 1.3e-99 367.5 333 61.3
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 1.3e-99 367.5 261 71.6
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.7e-99 367.1 247 74.5
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 2.3e-99 366.7 332 59.0
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 3.0e-99 366.3 259 72.6
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 3.9e-99 365.9 238 74.4
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 3.9e-99 365.9 238 74.4
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 5.1e-99 365.5 261 69.7
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 5.1e-99 365.5 234 75.6
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 5.1e-99 365.5 365 56.2
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 6.6e-99 365.2 261 70.9
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 6.6e-99 365.2 261 70.9
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.5e-98 364.0 239 75.3
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 1.5e-98 364.0 230 77.8
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 3.3e-98 362.8 263 68.8
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 4.3e-98 362.5 259 69.1
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 9.5e-98 361.3 259 68.7
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 2.8e-97 359.8 390 53.1
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 6.2e-97 358.6 363 55.6
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 6.2e-97 358.6 363 55.6
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 1.4e-96 357.5 226 76.1
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 1.4e-96 357.5 310 60.6
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 5.2e-96 355.5 230 76.1
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 2.6e-95 353.2 259 67.6
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 1.3e-94 350.9 252 69.0
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 1.9e-93 347.1 229 74.2
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 1.9e-93 347.1 234 73.1
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 1.9e-93 347.1 281 62.3
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 7.1e-93 345.1 259 64.9
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 2.1e-92 343.6 242 69.4
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 2.7e-92 343.2 361 51.8
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 6.6e-91 338.6 353 52.7
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 1.4e-88 330.9 214 73.4
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 5.2e-88 328.9 303 58.4
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 1.5e-87 327.4 196 81.6
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.7e-86 323.9 268 60.8
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 4.9e-86 322.4 243 66.7
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 3.0e-83 313.2 247 62.3
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 4.3e-82 309.3 238 66.4
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 7.3e-82 308.5 268 58.6
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 1.1e-80 304.7 179 83.8
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 2.0e-79 300.4 177 83.6
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 7.6e-79 298.5 227 70.5
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.7e-78 297.4 232 71.1
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 8.4e-78 295.0 181 81.8
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.4e-77 294.3 239 63.2
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.2e-77 293.1 239 60.7
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.2e-77 293.1 238 60.9
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 5.4e-77 292.4 182 89.6
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 6.2e-73 278.9 223 61.9
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 1.4e-72 277.7 238 61.8
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.4e-72 277.7 313 53.4
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 1.5e-71 274.2 177 75.1
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 2.1e-65 253.8 193 69.9
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 1.4e-64 251.1 154 83.1
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.3e-59 234.6 159 77.4
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 4.3e-58 229.6 153 73.2
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 4.1e-56 223.0 403 40.2
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.8e-51 207.6 220 46.8
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 5.1e-51 206.1 220 46.4
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 4.5e-47 193.0 377 39.0
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 2.2e-46 190.7 258 46.9
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 3.0e-43 180.3 273 37.7
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 3.3e-42 176.8 131 66.4
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 3.3e-42 176.8 131 67.2
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 5.7e-42 176.0 342 37.1
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 2.2e-41 174.1 131 65.6
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 2.2e-41 174.1 131 65.6
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 6.3e-41 172.6 131 64.9
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 6.3e-41 172.6 131 64.9
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 2.0e-39 167.5 252 38.5
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 7.7e-39 165.6 108 73.1
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 3.8e-38 163.3 108 72.2
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 3.2e-37 160.2 102 74.5
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 3.2e-37 160.2 102 74.5
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 4.2e-37 159.8 108 71.3
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.3e-35 154.1 148 58.8
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 1.8e-32 144.4 91 75.8
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 1.6e-31 141.4 197 47.7
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.1e-29 135.2 219 43.4
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 3.2e-29 133.7 102 66.7
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 3.2e-29 133.7 102 66.7
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 3.2e-29 133.7 224 41.1
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 2.1e-28 131.0 102 65.7
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 3.0e-27 127.1 108 61.1
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 2.6e-26 124.0 125 56.8
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 1.8e-24 117.9 183 39.9
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 7.0e-24 115.9 82 65.9
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 2.6e-18 97.4 84 54.8
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 4.4e-18 96.7 270 27.4
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 7.5e-18 95.9 60 78.3
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 9.8e-18 95.5 63 69.8
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 4.5e-15 86.7 78 53.8
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 5.0e-14 83.2 58 79.3
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 4.7e-12 76.6 53 71.7
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 9.8e-10 68.9 71 52.1


User provided reference genes

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