Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 9.5e-84 313.5 167 100.0
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 2.4e-50 202.6 155 74.8
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 5.1e-45 184.9 168 66.1
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 6.7e-45 184.5 168 66.1
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 1.9e-39 166.4 169 59.8
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 4.1e-26 122.1 125 57.6
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 1.7e-24 116.7 187 43.9
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 8.5e-24 114.4 197 42.1
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 4.7e-22 108.6 199 40.2
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.0e-21 107.5 185 41.1
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 2.3e-21 106.3 204 40.7
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 3.9e-21 105.5 178 38.8
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 3.9e-21 105.5 190 41.6
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 5.2e-21 105.1 183 40.4
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 1.1e-20 104.0 193 40.9
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.1e-20 104.0 172 41.3
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 2.0e-20 103.2 185 39.5
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.6e-20 102.8 183 38.3
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 3.3e-20 102.4 185 39.5
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.7e-20 101.7 185 40.0
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 7.4e-20 101.3 178 39.9
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 9.7e-20 100.9 195 39.5
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 1.7e-19 100.1 198 40.4
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.2e-19 99.8 185 39.5
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.2e-19 99.8 185 40.0
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.2e-19 99.8 199 37.7
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.2e-19 99.8 183 38.3
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 2.2e-19 99.8 193 40.4
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 2.8e-19 99.4 182 39.6
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.7e-19 99.0 185 40.0
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 3.7e-19 99.0 175 40.0
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.8e-19 98.6 198 38.4
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.8e-19 98.6 174 40.8
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.8e-19 98.6 185 38.9
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 8.2e-19 97.8 200 38.0
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 8.2e-19 97.8 183 38.8
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.1e-18 97.4 188 36.2
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 1.1e-18 97.4 174 39.7
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 1.1e-18 97.4 190 38.4
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 1.4e-18 97.1 190 38.9
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 1.4e-18 97.1 180 37.2
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 3.1e-18 95.9 189 40.2
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 3.1e-18 95.9 189 40.2
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 3.1e-18 95.9 185 38.4
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 5.3e-18 95.1 187 42.2
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 7.0e-18 94.7 190 36.8
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 7.0e-18 94.7 188 38.8
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 1.2e-17 94.0 188 38.8
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.2e-17 94.0 184 39.1
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 1.2e-17 94.0 192 40.6
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 1.6e-17 93.6 200 38.5
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.6e-17 93.6 186 40.9
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.6e-17 93.6 186 40.9
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 2.0e-17 93.2 193 38.9
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 2.0e-17 93.2 189 39.7
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 2.6e-17 92.8 224 35.3
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 3.5e-17 92.4 200 39.0
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 4.5e-17 92.0 187 42.8
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 5.9e-17 91.7 149 39.6
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 5.9e-17 91.7 183 35.0
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 5.9e-17 91.7 189 36.0
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 7.7e-17 91.3 193 36.8
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 2.2e-16 89.7 188 39.4
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 2.2e-16 89.7 174 37.9
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 2.2e-16 89.7 206 41.3
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 3.8e-16 89.0 190 35.8
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 5.0e-16 88.6 186 36.0
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.0e-16 88.6 173 38.7
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 5.0e-16 88.6 193 37.8
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 6.5e-16 88.2 169 37.9
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 8.5e-16 87.8 230 33.5
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 8.5e-16 87.8 190 35.8
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 8.5e-16 87.8 191 37.2
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 8.5e-16 87.8 190 35.8
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 1.1e-15 87.4 166 38.0
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 1.1e-15 87.4 145 42.8
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 1.5e-15 87.0 128 43.0
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 2.5e-15 86.3 202 36.1
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 3.2e-15 85.9 185 35.7
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 4.2e-15 85.5 150 39.3
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 4.2e-15 85.5 190 36.8
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 9.4e-15 84.3 194 35.1
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 1.6e-14 83.6 187 41.2
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 2.1e-14 83.2 177 39.0
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 2.1e-14 83.2 187 41.7
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 3.6e-14 82.4 192 37.5
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 1.4e-13 80.5 157 40.1
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 1.4e-13 80.5 192 37.5
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 1.8e-13 80.1 176 36.4
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 1.8e-13 80.1 176 36.4
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 2.3e-13 79.7 195 34.4
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.0e-13 79.3 130 40.0
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.0e-13 79.3 130 40.0
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 5.2e-13 78.6 162 35.2
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 5.2e-13 78.6 144 36.1
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 1.2e-12 77.4 170 35.3
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 1.5e-12 77.0 118 39.8
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 2.0e-12 76.6 205 34.1
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 2.6e-12 76.3 118 39.8
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 2.6e-12 76.3 118 39.8
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 3.3e-12 75.9 122 40.2
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 3.3e-12 75.9 164 34.8
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 5.7e-12 75.1 165 34.5
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 5.7e-12 75.1 118 39.8
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 5.7e-12 75.1 165 34.5
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 1.3e-11 73.9 170 35.3
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 1.3e-11 73.9 170 35.3
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 1.7e-11 73.6 80 53.8
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 1.7e-11 73.6 164 34.8
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 2.2e-11 73.2 81 49.4
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 2.8e-11 72.8 114 43.9
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 2.8e-11 72.8 152 38.8
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 2.8e-11 72.8 196 36.2
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 3.7e-11 72.4 193 33.2
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 3.7e-11 72.4 176 34.7
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 4.8e-11 72.0 169 36.1
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 8.2e-11 71.2 170 34.7
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 1.1e-10 70.9 172 36.0
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 1.1e-10 70.9 197 31.5
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 1.1e-10 70.9 173 33.5
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.4e-10 70.5 177 36.2
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 1.4e-10 70.5 148 35.1
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 3.1e-10 69.3 138 37.0
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 3.1e-10 69.3 196 33.2
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 5.3e-10 68.6 153 34.6
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 5.3e-10 68.6 172 31.4
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 5.3e-10 68.6 147 37.4
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 5.3e-10 68.6 185 32.4
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 1.2e-09 67.4 180 36.1
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 1.6e-09 67.0 160 34.4
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 2.0e-09 66.6 160 32.5
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 2.0e-09 66.6 160 32.5
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.7e-09 66.2 178 34.8
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 2.7e-09 66.2 185 31.9
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 4.5e-09 65.5 152 30.9
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 4.5e-09 65.5 90 47.8
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 7.7e-09 64.7 148 33.1
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 1.0e-08 64.3 167 31.7
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 1.7e-08 63.5 137 35.8
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 6.5e-08 61.6 91 46.2
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 8.5e-08 61.2 157 32.5
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 1.1e-07 60.8 171 31.6
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 1.1e-07 60.8 165 32.1
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 1.9e-07 60.1 168 32.1
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.5e-07 59.7 58 44.8
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.5e-07 59.7 58 44.8
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 2.5e-07 59.7 229 27.5
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 2.5e-07 59.7 133 30.8
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 3.2e-07 59.3 172 30.8
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 4.2e-07 58.9 162 30.2
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 4.2e-07 58.9 90 44.4
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 5.5e-07 58.5 160 31.2
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 7.2e-07 58.2 131 33.6
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 9.4e-07 57.8 147 31.3
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 9.4e-07 57.8 147 31.3
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 1.2e-06 57.4 170 31.8
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 2.1e-06 56.6 161 30.4
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 2.1e-06 56.6 167 31.1
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 2.1e-06 56.6 171 29.8
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 2.7e-06 56.2 167 31.1
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 2.7e-06 56.2 167 31.1
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 4.7e-06 55.5 69 47.8
VMungo1309G1209 Vigna mungo HOM05D033454 ORTHO05D050263 6.1e-06 55.1 68 42.6


User provided reference genes

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