Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 3.4e-60 235.0 131 100.0
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 1.4e-21 106.7 130 46.2
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 1.3e-14 83.6 92 44.6
AUR62032402 Chenopodium quinoa HOM05D000009 ORTHO05D000008 3.7e-14 82.0 41 87.8
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 3.7e-14 82.0 93 47.3
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 3.7e-14 82.0 93 45.2
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 8.2e-14 80.9 93 44.1
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.1e-13 80.5 93 44.1
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 1.4e-13 80.1 101 43.6
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 2.4e-13 79.3 92 45.7
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 4.1e-13 78.6 92 45.7
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 5.3e-13 78.2 94 45.7
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 5.3e-13 78.2 94 45.7
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 5.3e-13 78.2 94 45.7
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 5.3e-13 78.2 97 46.4
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 6.9e-13 77.8 89 47.2
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 9.0e-13 77.4 70 51.4
ClCG11G013950 Citrullus lanatus HOM05D003277 ORTHO05D003275 1.5e-12 76.6 92 44.6
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.0e-12 76.3 91 46.2
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 2.6e-12 75.9 88 47.7
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 3.4e-12 75.5 74 51.4
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 3.4e-12 75.5 76 50.0
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 3.4e-12 75.5 97 45.4
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 4.5e-12 75.1 132 37.9
Sed0006476 Sechium edule HOM05D003277 ORTHO05D003275 5.9e-12 74.7 92 42.4
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 7.6e-12 74.3 70 48.6
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 7.6e-12 74.3 70 52.9
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 1.0e-11 73.9 70 52.9
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 1.0e-11 73.9 73 45.2
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.3e-11 73.6 82 45.1
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 1.3e-11 73.6 92 44.6
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 2.2e-11 72.8 69 47.8
Eucgr.C02884 Eucalyptus grandis HOM05D003277 ORTHO05D003275 2.2e-11 72.8 124 36.3
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 2.2e-11 72.8 103 41.7
Oeu036629.1 Olea europaea HOM05D003277 ORTHO05D003275 2.2e-11 72.8 90 45.6
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 2.2e-11 72.8 129 37.2
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 2.2e-11 72.8 74 47.3
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 2.9e-11 72.4 70 52.9
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 5.0e-11 71.6 70 42.9
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 5.0e-11 71.6 70 42.9
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 5.0e-11 71.6 75 48.0
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 6.5e-11 71.2 82 43.9
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 6.5e-11 71.2 82 43.9
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 6.5e-11 71.2 72 52.8
CsaV3_1G030570 Cucumis sativus L. HOM05D003277 ORTHO05D003275 6.5e-11 71.2 82 43.9
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 6.5e-11 71.2 89 42.7
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 6.5e-11 71.2 70 42.9
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 8.4e-11 70.9 69 52.2
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 8.4e-11 70.9 75 49.3
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 8.4e-11 70.9 72 51.4
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 8.4e-11 70.9 72 51.4
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 8.4e-11 70.9 130 36.2
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.1e-10 70.5 80 43.8
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 1.1e-10 70.5 104 41.3
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 1.1e-10 70.5 99 45.5
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 1.1e-10 70.5 99 40.4
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.1e-10 70.5 75 45.3
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 1.1e-10 70.5 69 49.3
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 1.4e-10 70.1 104 39.4
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 1.4e-10 70.1 71 50.7
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 1.4e-10 70.1 126 33.3
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 1.4e-10 70.1 81 42.0
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 1.9e-10 69.7 73 45.2
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 1.9e-10 69.7 72 50.0
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 1.9e-10 69.7 71 49.3
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 2.5e-10 69.3 69 49.3
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 2.5e-10 69.3 69 50.7
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 2.5e-10 69.3 89 40.4
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 3.2e-10 68.9 73 49.3
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 3.2e-10 68.9 73 43.8
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 3.2e-10 68.9 74 43.2
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 3.2e-10 68.9 79 48.1
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 4.2e-10 68.6 74 47.3
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 4.2e-10 68.6 93 43.0
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 5.5e-10 68.2 72 51.4
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 5.5e-10 68.2 70 50.0
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 7.2e-10 67.8 74 41.9
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 7.2e-10 67.8 72 47.2
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 7.2e-10 67.8 74 48.6
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 7.2e-10 67.8 69 50.7
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 7.2e-10 67.8 74 48.6
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 7.2e-10 67.8 77 44.2
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 7.2e-10 67.8 73 45.2
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 9.3e-10 67.4 74 48.6
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 9.3e-10 67.4 69 47.8
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 9.3e-10 67.4 69 49.3
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.2e-09 67.0 75 45.3
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 1.2e-09 67.0 93 41.9
Ciclev10009982m.g Citrus clementina HOM05D003277 ORTHO05D003275 1.6e-09 66.6 91 39.6
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 1.6e-09 66.6 90 42.2
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 1.6e-09 66.6 90 42.2
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.6e-09 66.6 70 50.0
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.6e-09 66.6 70 50.0
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 1.6e-09 66.6 70 51.4
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 1.6e-09 66.6 91 44.0
MELO3C029688.2 Cucumis melo HOM05D003277 ORTHO05D003275 2.1e-09 66.2 82 42.7
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 2.1e-09 66.2 130 34.6
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 2.1e-09 66.2 75 45.3
CANSAT56G1808 Cannabis sativa HOM05D003277 ORTHO05D003275 2.7e-09 65.9 74 51.4
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.7e-09 65.9 71 50.7
TPR.G27852 Trifolium pratense HOM05D003277 ORTHO05D003275 2.7e-09 65.9 78 43.6
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.5e-09 65.5 130 34.6
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 3.5e-09 65.5 69 46.4
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 3.5e-09 65.5 72 45.8
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 4.6e-09 65.1 76 47.4
Glyma.09G189600 Glycine max HOM05D003277 ORTHO05D003275 4.6e-09 65.1 68 50.0
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 6.1e-09 64.7 130 34.6
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 6.1e-09 64.7 69 49.3
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 6.1e-09 64.7 97 43.3
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 6.1e-09 64.7 97 43.3
RhsimUnG0085500 Rhododendron simsii HOM05D003277 ORTHO05D003275 6.1e-09 64.7 69 49.3
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 6.1e-09 64.7 69 47.8
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 7.9e-09 64.3 100 40.0
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 7.9e-09 64.3 100 40.0
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 1.3e-08 63.5 69 43.5
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 1.3e-08 63.5 81 42.0
Sopen03g039050 Solanum pennellii HOM05D003277 ORTHO05D003275 1.3e-08 63.5 70 47.1
Sopen12g003020 Solanum pennellii HOM05D003277 ORTHO05D003275 1.3e-08 63.5 74 44.6
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 1.8e-08 63.2 100 40.0
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 1.8e-08 63.2 100 40.0
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.8e-08 63.2 70 47.1
Nitab4.5_0003537g0060 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.8e-08 63.2 80 42.5
QL12p026142 Quercus lobata HOM05D003277 ORTHO05D003275 1.8e-08 63.2 95 42.1
Rhsim07G0155500 Rhododendron simsii HOM05D003277 ORTHO05D003275 1.8e-08 63.2 90 41.1
Solyc03g120170.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.8e-08 63.2 70 45.7
PGSC0003DMG400005684 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.8e-08 63.2 70 47.1
DCAR_021143 Daucus carota HOM05D003277 ORTHO05D003275 2.3e-08 62.8 77 41.6
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 2.3e-08 62.8 129 34.9
ATR1120G074 Amborella trichopoda HOM05D003277 ORTHO05D003275 3.0e-08 62.4 85 42.4
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 3.0e-08 62.4 75 41.3
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 3.9e-08 62.0 93 40.9
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 3.9e-08 62.0 101 35.6
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 3.9e-08 62.0 89 40.4
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 5.1e-08 61.6 74 45.9
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 5.1e-08 61.6 74 47.3
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 5.1e-08 61.6 75 44.0
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 5.1e-08 61.6 71 45.1
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 6.7e-08 61.2 69 44.9
CAN.G438.69 Capsicum annuum HOM05D003277 ORTHO05D003275 8.7e-08 60.8 70 47.1
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 8.7e-08 60.8 73 41.1
Migut.A00248 Erythranthe guttata HOM05D003277 ORTHO05D003275 8.7e-08 60.8 88 39.8
FAN28G0377 Fragaria x ananassa HOM05D000750 ORTHO05D000714 8.7e-08 60.8 99 39.4
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 8.7e-08 60.8 69 44.9
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 8.7e-08 60.8 69 44.9
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 1.1e-07 60.5 73 41.1
Lj3g0000153 Lotus japonicus HOM05D003277 ORTHO05D003275 1.1e-07 60.5 67 46.3
Solyc12g007040.3 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.1e-07 60.5 74 43.2
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.5e-07 60.1 77 36.4
Nitab4.5_0014613g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.5e-07 60.1 70 44.3
Rhsim08G0221600 Rhododendron simsii HOM05D003277 ORTHO05D003275 1.5e-07 60.1 73 45.2
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 1.5e-07 60.1 73 43.8
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 1.9e-07 59.7 68 45.6
RcHm_v2.0_Chr2g0137921 Rosa chinensis HOM05D003277 ORTHO05D003275 1.9e-07 59.7 72 44.4
PGSC0003DMG400000320 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.9e-07 59.7 73 41.1
CANSAT56G3518 Cannabis sativa HOM05D003277 ORTHO05D003275 2.5e-07 59.3 89 39.3
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 3.3e-07 58.9 76 40.8
Sopen12g003040 Solanum pennellii HOM05D003277 ORTHO05D003275 3.3e-07 58.9 73 41.1
SGA_v2.0_scaffold27G11531 Striga asiatica HOM05D003277 ORTHO05D003275 3.3e-07 58.9 92 37.0
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 4.3e-07 58.5 73 37.0
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 4.3e-07 58.5 72 45.8
Ciclev10010574m.g Citrus clementina HOM05D003277 ORTHO05D003275 5.7e-07 58.2 76 42.1
PGSC0003DMG400000318 Solanum tuberosum HOM05D003277 ORTHO05D003275 5.7e-07 58.2 73 39.7
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 7.4e-07 57.8 100 40.0
Glyma.07G006000 Glycine max HOM05D003277 ORTHO05D003275 1.3e-06 57.0 69 42.0
CARHR115510 Cardamine hirsuta HOM05D012534 ORTHO05D003275 1.6e-06 56.6 90 41.1
Peaxi162Scf00560g00019 Petunia axillaris HOM05D003277 ORTHO05D003275 1.6e-06 56.6 75 38.7
CSS0013613 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 2.2e-06 56.2 75 46.7
THA.LOC104803771 Tarenaya hassleriana HOM05D012534 ORTHO05D003275 2.2e-06 56.2 69 43.5
DCAR_010449 Daucus carota HOM05D003277 ORTHO05D003275 2.8e-06 55.8 75 37.3
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 2.8e-06 55.8 75 44.0
vmacro18909 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 2.8e-06 55.8 69 42.0
Lalb_Chr04g0262701 Lupinus albus HOM05D003277 ORTHO05D003275 3.7e-06 55.5 70 42.9
arahy.Tifrunner.gnm1.ann1.YJAD7Q Arachis hypogaea HOM05D003277 ORTHO05D003275 4.8e-06 55.1 69 44.9
Medtr4g012460 Medicago truncatula HOM05D003277 ORTHO05D003275 4.8e-06 55.1 69 46.4
Os01g0182300 Oryza sativa ssp. japonica HOM05D003277 ORTHO05D003275 4.8e-06 55.1 78 44.9
TPR.G39760 Trifolium pratense HOM05D003277 ORTHO05D003275 4.8e-06 55.1 69 46.4
CSS0048107 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 6.3e-06 54.7 75 46.7
PSO210G7254 Papaver somniferum HOM05D002095 ORTHO05D002058 6.3e-06 54.7 84 38.1
Psat7g252200 Pisum sativum HOM05D003277 ORTHO05D003275 6.3e-06 54.7 72 43.1
arahy.Tifrunner.gnm1.ann1.RIWW0V Arachis hypogaea HOM05D003277 ORTHO05D003275 8.2e-06 54.3 74 37.8
Lsat_1_v5_gn_5_130221 Lactuca sativa HOM05D003277 ORTHO05D003275 8.2e-06 54.3 67 38.8
Lalb_Chr04g0262721 Lupinus albus HOM05D003277 ORTHO05D003275 8.2e-06 54.3 80 40.0
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 8.2e-06 54.3 71 40.8


User provided reference genes

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