Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 1.3e-119 433.0 208 100.0
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 1.5e-91 339.7 202 81.7
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 4.5e-91 338.2 202 81.7
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 1.7e-69 266.5 163 71.8
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 2.8e-69 265.8 195 64.1
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 7.0e-68 261.2 172 69.8
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 3.5e-67 258.8 203 61.1
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 3.5e-67 258.8 204 62.7
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 4.5e-67 258.5 200 60.5
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 1.3e-66 256.9 205 60.0
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 1.7e-66 256.5 203 65.5
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 2.3e-66 256.1 144 79.2
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 2.9e-66 255.8 178 66.3
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 3.8e-66 255.4 187 66.3
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 6.6e-66 254.6 144 79.9
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 8.6e-66 254.2 163 70.6
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.1e-65 253.8 178 66.3
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 1.1e-65 253.8 178 66.3
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.9e-65 253.1 190 62.1
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 5.5e-65 251.5 198 60.6
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 7.2e-65 251.1 145 77.9
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 7.2e-65 251.1 172 68.6
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 9.5e-65 250.8 146 76.0
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 1.2e-64 250.4 153 73.2
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.6e-64 250.0 172 65.7
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 1.6e-64 250.0 144 76.4
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 2.1e-64 249.6 144 75.7
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 2.1e-64 249.6 179 67.0
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 3.6e-64 248.8 168 68.5
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 3.6e-64 248.8 200 61.0
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 4.7e-64 248.4 196 61.7
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.0e-63 247.3 150 72.7
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 1.0e-63 247.3 182 64.3
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 1.4e-63 246.9 153 72.5
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 1.8e-63 246.5 171 65.5
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 1.8e-63 246.5 153 72.5
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 4.0e-63 245.4 171 69.0
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 5.2e-63 245.0 150 72.7
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 6.8e-63 244.6 159 69.8
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 8.9e-63 244.2 176 66.5
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 8.9e-63 244.2 143 76.9
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 1.2e-62 243.8 144 75.0
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 1.2e-62 243.8 146 71.2
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.2e-62 243.8 146 73.3
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 1.2e-62 243.8 171 68.4
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 1.5e-62 243.4 146 74.0
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 1.5e-62 243.4 165 67.9
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 2.0e-62 243.0 197 59.9
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 2.0e-62 243.0 170 67.6
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 2.0e-62 243.0 169 66.3
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 2.6e-62 242.7 146 74.0
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 3.4e-62 242.3 144 75.7
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 4.4e-62 241.9 159 69.8
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 4.4e-62 241.9 143 74.8
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 5.7e-62 241.5 144 75.0
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 7.5e-62 241.1 144 75.0
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 7.5e-62 241.1 192 62.0
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 2.2e-61 239.6 144 74.3
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 2.8e-61 239.2 144 74.3
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 3.7e-61 238.8 159 69.2
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 4.9e-61 238.4 126 93.7
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 4.9e-61 238.4 148 70.9
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 4.9e-61 238.4 147 73.5
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 6.3e-61 238.0 144 73.6
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 6.3e-61 238.0 178 64.6
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 8.3e-61 237.7 165 67.3
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 8.3e-61 237.7 144 74.3
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 1.1e-60 237.3 144 74.3
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 1.1e-60 237.3 165 66.1
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 1.4e-60 236.9 144 73.6
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 1.4e-60 236.9 144 73.6
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 1.4e-60 236.9 143 74.1
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 2.4e-60 236.1 190 63.2
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 2.4e-60 236.1 144 72.2
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 3.1e-60 235.7 144 73.6
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 3.1e-60 235.7 121 95.9
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 4.1e-60 235.3 143 74.1
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 7.0e-60 234.6 121 95.9
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 7.0e-60 234.6 180 63.3
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 7.0e-60 234.6 200 57.0
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 9.2e-60 234.2 197 60.4
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 2.7e-59 232.6 144 72.2
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 1.0e-58 230.7 144 72.9
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 1.0e-58 230.7 144 70.8
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 3.8e-58 228.8 145 70.3
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 2.5e-57 226.1 179 65.4
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 1.2e-54 217.2 170 59.4
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 1.2e-54 217.2 151 62.9
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 3.4e-54 215.7 186 57.0
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 9.8e-54 214.2 142 69.0
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.2e-53 213.0 190 56.3
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 8.3e-53 211.1 152 69.7
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 5.4e-52 208.4 122 74.6
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 1.2e-51 207.2 186 57.5
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 2.0e-51 206.5 149 64.4
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 4.6e-51 205.3 122 75.4
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 7.8e-51 204.5 113 80.5
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 3.0e-50 202.6 139 65.5
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 6.6e-50 201.4 124 75.0
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 6.6e-50 201.4 154 62.3
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 1.5e-49 200.3 144 66.7
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 2.5e-49 199.5 144 65.3
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 2.5e-49 199.5 144 65.3
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 2.5e-49 199.5 122 72.1
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 7.3e-49 198.0 144 63.9
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.6e-48 196.8 159 58.5
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 4.7e-48 195.3 146 60.3
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 4.7e-48 195.3 122 69.7
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 1.7e-45 186.8 142 63.4
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 4.9e-45 185.3 146 58.2
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 1.2e-43 180.6 135 63.0
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 1.0e-42 177.6 113 72.6
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 1.1e-41 174.1 144 56.9
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 1.1e-41 174.1 152 52.0
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 2.1e-40 169.9 151 55.0
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 2.8e-40 169.5 133 57.9
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 1.8e-39 166.8 99 73.7
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 3.1e-39 166.0 111 68.5
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 4.0e-39 165.6 106 70.8
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 1.5e-38 163.7 121 62.8
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.5e-38 163.7 121 62.8
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.6e-38 162.9 98 71.4
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 3.4e-38 162.5 99 73.7
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 3.4e-38 162.5 112 64.3
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 4.1e-36 155.6 112 63.4
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 2.3e-34 149.8 107 63.6
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 1.3e-26 124.0 69 82.6
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 2.3e-26 123.2 120 45.0
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 4.3e-25 119.0 84 66.7
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 1.8e-23 113.6 75 62.7
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 6.9e-23 111.7 66 78.8
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 1.5e-22 110.5 68 72.1
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 3.4e-22 109.4 115 47.0
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 2.2e-21 106.7 72 62.5
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 4.9e-21 105.5 85 61.2
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.9e-20 103.6 97 47.4
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 1.0e-18 97.8 111 46.8
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 2.5e-17 93.2 77 55.8
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 4.0e-15 85.9 80 47.5
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 2.4e-12 76.6 58 60.3
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 9.3e-12 74.7 50 66.0
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 1.6e-11 73.9 70 51.4
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 1.2e-06 57.8 33 72.7


User provided reference genes

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