Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 0.0e+00 1100.5 542 100.0
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 1.4e-163 580.5 560 57.9
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 8.8e-147 524.6 544 52.6
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 1.3e-142 510.8 540 51.7
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 2.3e-142 510.0 560 50.5
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 2.9e-142 509.6 558 50.2
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 4.3e-141 505.8 563 48.8
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 1.6e-140 503.8 546 50.4
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 2.8e-140 503.1 558 49.1
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 8.0e-140 501.5 558 48.9
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 1.8e-139 500.4 560 49.8
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 1.8e-139 500.4 558 49.3
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 1.5e-138 497.3 562 49.5
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 2.6e-138 496.5 563 47.8
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 9.8e-138 494.6 543 50.6
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 2.9e-137 493.0 560 49.3
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 2.9e-137 493.0 564 47.9
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 2.9e-137 493.0 556 48.7
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 4.9e-137 492.3 548 49.3
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 6.4e-137 491.9 543 49.7
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 1.4e-136 490.7 558 49.3
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 3.2e-136 489.6 559 48.8
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 5.4e-136 488.8 559 47.8
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 7.0e-136 488.4 561 48.7
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 9.2e-136 488.0 562 48.9
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 1.2e-135 487.6 549 48.6
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 1.6e-135 487.3 552 48.2
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 2.0e-135 486.9 559 49.9
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 5.9e-135 485.3 559 48.3
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.0e-134 484.6 561 48.5
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 2.3e-134 483.4 544 49.8
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 2.3e-134 483.4 551 49.4
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 8.6e-134 481.5 568 46.5
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 1.9e-133 480.3 545 49.4
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 4.3e-133 479.2 608 44.4
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 9.5e-133 478.0 601 44.9
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 1.2e-132 477.6 551 49.4
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 2.8e-132 476.5 570 46.3
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 2.3e-131 473.4 548 46.9
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 4.0e-131 472.6 543 48.8
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 5.2e-131 472.2 614 44.3
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 6.8e-131 471.9 583 47.0
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 4.4e-130 469.2 552 47.8
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 1.4e-128 464.2 566 47.2
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 2.4e-128 463.4 564 45.9
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 3.5e-127 459.5 575 45.9
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 3.5e-127 459.5 561 46.9
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 3.9e-126 456.1 472 55.5
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 8.6e-126 454.9 515 48.2
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 8.6e-126 454.9 492 50.6
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 3.3e-125 453.0 538 46.7
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 7.3e-125 451.8 522 48.3
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 1.6e-124 450.7 542 47.2
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 2.8e-124 449.9 546 46.3
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 6.2e-124 448.7 601 44.1
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 4.4e-122 442.6 556 45.1
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 4.4e-122 442.6 557 45.1
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 5.8e-122 442.2 598 43.6
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 9.8e-122 441.4 546 45.1
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 3.7e-121 439.5 546 44.9
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 4.9e-121 439.1 585 44.3
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 1.9e-120 437.2 547 45.5
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 2.4e-120 436.8 559 45.4
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 1.2e-119 434.5 542 45.2
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 1.6e-119 434.1 551 44.8
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 3.5e-119 433.0 549 45.7
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 7.8e-119 431.8 557 42.9
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 5.1e-118 429.1 535 44.7
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 5.1e-118 429.1 534 46.8
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 2.8e-116 423.3 546 44.9
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 6.2e-116 422.2 551 44.8
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 6.2e-116 422.2 551 44.8
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 6.2e-116 422.2 339 65.5
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 1.1e-115 421.4 570 43.5
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 2.2e-113 413.7 560 43.6
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 2.2e-113 413.7 560 43.6
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 2.4e-112 410.2 538 44.8
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 2.4e-112 410.2 545 42.2
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 4.1e-112 409.5 564 42.7
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.6e-111 407.5 549 44.1
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 3.5e-111 406.4 545 44.8
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 7.8e-111 405.2 438 49.3
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 1.0e-110 404.8 494 46.4
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 3.0e-110 403.3 523 44.4
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 2.5e-109 400.2 482 45.9
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 1.8e-107 394.0 586 41.1
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 1.5e-106 391.0 560 42.1
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 1.7e-105 387.5 536 42.5
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 6.4e-105 385.6 537 42.3
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 3.2e-104 383.3 534 43.1
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 9.3e-104 381.7 329 57.4
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 1.2e-103 381.3 438 47.7
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 5.1e-102 375.9 564 40.6
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 9.6e-101 371.7 539 41.7
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.9e-97 360.1 477 43.0
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 1.4e-96 357.8 331 53.8
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 4.2e-96 356.3 537 40.4
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 1.6e-95 354.4 522 41.0
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 3.5e-95 353.2 560 39.6
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 1.8e-94 350.9 573 40.0
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 5.1e-94 349.4 330 53.0
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 6.7e-94 349.0 585 39.1
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 2.9e-89 333.6 510 39.8
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 4.2e-88 329.7 539 39.3
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 1.5e-82 311.2 499 40.7
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 1.5e-82 311.2 494 40.1
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 1.0e-81 308.5 334 47.3
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 2.5e-80 303.9 480 41.0
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 4.2e-80 303.1 262 58.0
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 5.5e-80 302.8 555 35.3
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 1.2e-79 301.6 545 34.3
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.8e-78 297.7 555 36.6
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 5.1e-78 296.2 223 64.6
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 8.7e-78 295.4 373 44.8
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 4.3e-77 293.1 455 40.9
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 2.0e-74 284.3 258 55.0
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 8.5e-73 278.9 593 33.7
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 8.7e-70 268.9 550 34.4
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 1.8e-67 261.2 330 44.8
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 2.2e-65 254.2 456 36.6
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 1.4e-56 224.9 242 47.9
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 3.1e-51 207.2 292 41.8
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 1.2e-47 195.3 305 39.0
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 4.7e-47 193.4 191 49.7
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 5.9e-42 176.4 138 63.0
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 2.3e-33 147.9 353 32.6
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 3.7e-28 130.6 97 62.9
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 1.3e-25 122.1 370 28.1
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 1.5e-24 118.6 284 31.0
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 5.6e-24 116.7 71 78.9
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 2.1e-23 114.8 71 78.9
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 1.8e-22 111.7 92 62.0
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 5.4e-19 100.1 236 30.1
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 9.2e-19 99.4 69 68.1
PSO198G0133 Papaver somniferum HOM05D005024 ORTHO05D006396 8.9e-14 82.8 79 54.4
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 2.0e-13 81.6 94 45.7
ATR0053G014 Amborella trichopoda HOM05D005024 ORTHO05D006396 1.3e-12 79.0 61 63.9
GSVIVG01035496001 Vitis vinifera HOM05D005024 ORTHO05D006396 2.9e-12 77.8 52 69.2
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 5.4e-11 73.6 244 25.4
Carub.0004s0613 Capsella rubella HOM05D005024 ORTHO05D006396 2.3e-09 68.2 45 68.9


User provided reference genes

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