Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 5.3e-190 667.5 339 100.0
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.8e-166 589.3 339 87.9
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.3e-164 583.2 337 87.2
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 5.5e-163 577.8 339 85.0
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 3.0e-161 572.0 339 84.7
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.0e-153 547.0 316 87.3
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 5.7e-152 541.2 316 86.7
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 2.9e-148 528.9 339 79.6
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 5.0e-148 528.1 274 96.7
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 2.5e-147 525.8 342 78.9
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 5.0e-140 501.5 339 76.7
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 3.5e-133 478.8 340 70.9
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 1.1e-131 473.8 300 77.0
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 5.6e-131 471.5 343 71.4
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 1.6e-130 469.9 305 77.4
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 3.6e-130 468.8 340 70.3
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 3.6e-130 468.8 296 77.4
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 6.1e-130 468.0 308 76.6
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 1.4e-129 466.8 300 75.7
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 1.4e-129 466.8 345 70.1
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 1.8e-129 466.5 304 75.7
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 2.3e-129 466.1 340 70.0
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 2.3e-129 466.1 316 72.5
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 3.0e-129 465.7 300 75.7
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 1.5e-128 463.4 340 70.9
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 2.6e-128 462.6 318 73.3
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 3.4e-128 462.2 309 76.7
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 4.4e-128 461.8 329 71.1
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 4.4e-128 461.8 340 70.6
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 7.5e-128 461.1 304 75.3
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 9.8e-128 460.7 285 78.9
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 9.8e-128 460.7 346 69.7
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 1.3e-127 460.3 297 76.8
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 1.3e-127 460.3 303 75.6
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 1.7e-127 459.9 297 76.1
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.7e-127 459.9 304 77.0
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 2.2e-127 459.5 304 74.3
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 2.9e-127 459.1 284 77.5
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.9e-127 459.1 304 76.0
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 2.9e-127 459.1 297 76.8
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 3.7e-127 458.8 325 72.6
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 6.4e-127 458.0 318 72.6
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 8.3e-127 457.6 300 75.3
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 1.1e-126 457.2 307 74.9
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 1.1e-126 457.2 340 69.4
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 1.4e-126 456.8 318 72.6
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 1.9e-126 456.4 348 68.7
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.9e-126 456.4 281 79.7
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 1.9e-126 456.4 352 67.0
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 4.1e-126 455.3 351 68.4
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.1e-126 455.3 304 76.0
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 5.4e-126 454.9 297 75.1
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 5.4e-126 454.9 312 73.4
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 1.6e-125 453.4 309 74.4
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 2.0e-125 453.0 345 66.1
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.7e-125 452.6 299 74.2
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 6.0e-125 451.4 304 72.0
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 7.8e-125 451.1 304 73.7
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 1.0e-124 450.7 287 78.0
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.3e-124 450.3 277 79.4
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 1.3e-124 450.3 305 73.1
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.7e-124 449.9 311 73.0
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 1.7e-124 449.9 277 79.4
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 2.3e-124 449.5 277 79.1
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 2.3e-124 449.5 294 75.9
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 3.0e-124 449.1 299 73.6
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 3.0e-124 449.1 295 77.6
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 3.0e-124 449.1 349 67.0
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 3.9e-124 448.7 290 75.5
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.0e-124 448.4 295 74.9
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 6.6e-124 448.0 304 73.7
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 8.6e-124 447.6 318 72.0
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 1.1e-123 447.2 300 74.3
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 1.5e-123 446.8 338 69.8
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 1.9e-123 446.4 299 73.2
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 4.3e-123 445.3 344 64.0
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 5.6e-123 444.9 291 74.2
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 9.5e-123 444.1 293 75.1
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 1.2e-122 443.7 286 75.2
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 1.6e-122 443.4 345 65.2
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.6e-122 443.4 277 78.0
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 2.1e-122 443.0 277 78.3
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 2.8e-122 442.6 310 71.3
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 3.6e-122 442.2 319 70.5
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 6.2e-122 441.4 277 77.6
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 6.2e-122 441.4 310 71.3
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 6.2e-122 441.4 310 71.3
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 6.2e-122 441.4 310 71.0
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 6.2e-122 441.4 344 67.2
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 1.1e-121 440.7 320 70.0
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 1.4e-121 440.3 277 77.3
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 1.4e-121 440.3 342 67.5
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.8e-121 439.9 349 65.9
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 1.8e-121 439.9 294 74.1
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 2.3e-121 439.5 319 69.9
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 3.1e-121 439.1 332 67.2
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 3.1e-121 439.1 399 59.6
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 4.0e-121 438.7 321 68.8
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 1.5e-120 436.8 277 76.9
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.5e-120 436.8 272 78.7
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 2.0e-120 436.4 299 72.2
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 2.0e-120 436.4 299 73.2
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 2.6e-120 436.0 296 72.3
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 2.6e-120 436.0 353 64.0
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 3.4e-120 435.6 313 71.2
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 3.4e-120 435.6 300 70.7
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 5.8e-120 434.9 334 68.0
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 9.8e-120 434.1 299 72.9
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 1.3e-119 433.7 302 72.5
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.1e-118 430.6 301 69.8
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 1.9e-118 429.9 291 73.9
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 3.2e-118 429.1 304 70.4
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 3.5e-117 425.6 265 77.7
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 4.6e-117 425.2 272 74.6
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 4.6e-117 425.2 294 69.7
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 6.0e-117 424.9 281 74.4
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 2.3e-116 422.9 296 68.9
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 3.9e-116 422.2 284 70.4
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 5.0e-116 421.8 281 71.2
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 1.6e-114 416.8 293 68.6
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 1.1e-113 414.1 338 65.7
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 1.5e-112 410.2 263 75.3
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 2.0e-112 409.8 298 67.4
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 2.0e-112 409.8 349 63.0
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 4.4e-112 408.7 282 70.2
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 9.9e-112 407.5 298 69.8
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 4.9e-111 405.2 303 66.3
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 1.1e-110 404.1 290 69.3
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 2.7e-109 399.4 306 67.3
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 3.5e-109 399.1 297 64.0
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 3.5e-109 399.1 283 68.2
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 2.5e-107 392.9 334 62.0
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 5.6e-107 391.7 321 62.6
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 6.8e-105 384.8 292 68.2
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 8.4e-103 377.9 288 68.4
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 3.2e-102 375.9 318 57.2
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 7.8e-101 371.3 263 70.3
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 2.1e-98 363.2 292 60.6
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 2.3e-92 343.2 276 61.2
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 1.9e-91 340.1 300 56.0
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 5.3e-89 332.0 253 70.4
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 5.4e-86 322.0 186 85.5
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 4.9e-79 298.9 303 51.2
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 8.4e-79 298.1 325 51.4
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 5.5e-78 295.4 255 62.7
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.1e-75 287.7 183 77.0
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 3.3e-75 286.2 274 50.4
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 1.3e-74 284.3 290 53.4
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.9e-64 248.8 239 58.6
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 6.5e-63 245.4 218 61.9
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 2.5e-62 243.4 174 74.1
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 9.7e-59 231.5 312 46.5
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 2.4e-57 226.9 224 57.6
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 1.9e-54 217.2 178 57.3
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.3e-52 210.3 123 81.3
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 1.4e-49 201.1 294 42.9
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 3.5e-48 196.4 177 58.8
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.5e-43 181.0 183 50.8
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 4.0e-36 156.4 138 58.7
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 4.4e-35 152.9 90 81.1
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 2.2e-31 140.6 77 85.7
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 4.0e-28 129.8 280 31.1
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.3e-26 124.8 75 81.3
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 1.8e-25 120.9 152 50.7
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 1.6e-24 117.9 68 83.8
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 2.0e-24 117.5 89 62.9
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.3e-22 110.2 165 41.8
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 8.9e-20 102.1 66 78.8
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 9.2e-17 92.0 83 55.4
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 1.0e-12 78.6 179 30.2
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.8e-12 77.8 81 55.6
CAN.G1019.1 Capsicum annuum HOM05D004037 ORTHO05D004744 6.6e-07 59.3 57 49.1
Lsat_1_v5_gn_5_112181 Lactuca sativa HOM05D002510 ORTHO05D007210 4.3e-06 56.6 29 86.2
Nn1g07592 Nelumbo nucifera HOM05D004037 ORTHO05D004744 5.6e-06 56.2 30 90.0


User provided reference genes

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