Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 7.4e-242 840.1 420 100.0
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 2.1e-180 636.0 420 75.7
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.2e-175 620.2 421 73.4
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 1.1e-149 533.9 461 60.7
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 2.9e-145 519.2 380 68.2
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 2.9e-137 492.7 427 58.8
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 4.6e-135 485.3 426 58.2
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 1.5e-133 480.3 427 58.8
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 4.3e-133 478.8 426 57.7
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 8.1e-132 474.6 386 62.7
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 2.1e-127 459.9 426 54.2
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 1.0e-126 457.6 427 53.9
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 3.9e-126 455.7 426 55.9
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 3.3e-125 452.6 425 54.4
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 5.6e-125 451.8 426 55.2
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 2.1e-124 449.9 429 54.3
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 5.8e-122 441.8 429 53.8
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 6.5e-121 438.3 426 53.3
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 2.5e-120 436.4 426 53.5
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 2.5e-120 436.4 375 58.1
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 1.6e-119 433.7 424 51.9
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 1.3e-118 430.6 427 52.9
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 1.1e-117 427.6 422 52.4
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 8.2e-116 421.4 428 51.2
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 6.9e-115 418.3 426 51.6
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.6e-114 416.4 418 52.4
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 3.4e-114 416.0 418 52.4
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.0e-113 414.5 423 52.0
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 1.3e-113 414.1 392 54.8
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 2.2e-113 413.3 444 50.9
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 5.0e-113 412.1 426 49.3
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.9e-112 410.2 426 52.1
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 7.2e-112 408.3 435 49.7
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.2e-111 407.5 423 51.5
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 2.1e-111 406.8 427 49.6
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 3.7e-108 396.0 422 48.8
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 1.1e-107 394.4 428 49.8
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.1e-107 394.4 419 50.1
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 1.4e-107 394.0 429 49.2
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 4.1e-107 392.5 423 48.2
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 2.6e-106 389.8 419 49.6
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 4.5e-106 389.0 427 48.9
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 1.0e-105 387.9 425 48.7
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 1.3e-105 387.5 428 48.4
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.7e-105 387.1 420 49.8
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 2.9e-105 386.3 427 48.5
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 8.5e-105 384.8 427 48.5
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 8.5e-105 384.8 420 49.3
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 3.2e-104 382.9 426 49.3
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 4.2e-104 382.5 426 47.9
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 1.6e-103 380.6 426 46.5
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 3.6e-103 379.4 371 52.8
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 1.0e-102 377.9 421 48.7
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 1.4e-102 377.5 427 47.3
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 1.4e-102 377.5 437 47.8
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 1.4e-102 377.5 436 48.9
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.1e-102 375.6 424 46.5
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.5e-101 374.0 427 47.1
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 1.3e-100 370.9 424 46.0
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.3e-100 370.9 423 47.3
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.3e-100 370.9 423 47.3
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.3e-100 370.9 421 48.0
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 4.8e-100 369.0 426 45.1
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 1.4e-99 367.5 427 45.7
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.4e-99 367.5 421 45.4
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.8e-99 367.1 397 50.6
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 3.1e-99 366.3 428 44.6
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 6.9e-99 365.2 364 52.2
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 9.1e-99 364.8 426 46.2
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 1.2e-98 364.4 424 44.8
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 2.0e-98 363.6 422 48.1
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 3.4e-98 362.8 429 45.7
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 1.7e-97 360.5 421 47.3
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.9e-97 359.8 423 46.6
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 5.0e-97 359.0 423 46.1
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 2.5e-96 356.7 427 46.1
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.2e-95 354.4 426 46.0
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 1.2e-95 354.4 430 44.4
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 2.1e-95 353.6 426 46.0
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 8.0e-95 351.7 430 44.2
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 1.4e-94 350.9 431 44.3
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 1.8e-94 350.5 395 47.8
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 3.9e-94 349.4 431 43.4
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 5.2e-94 349.0 422 46.2
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 6.7e-94 348.6 375 48.8
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 8.8e-94 348.2 425 43.5
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 1.5e-93 347.4 391 47.1
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 2.0e-93 347.1 417 44.6
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 1.3e-92 344.4 429 42.9
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.8e-92 343.2 423 44.4
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 1.8e-91 340.5 462 43.7
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 1.8e-91 340.5 466 44.2
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 3.1e-91 339.7 428 45.6
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 4.1e-91 339.3 421 45.6
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.0e-90 337.0 423 44.0
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 1.3e-89 334.3 421 44.4
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.7e-89 334.0 411 46.7
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 1.5e-88 330.9 425 43.3
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 1.2e-85 321.2 426 41.5
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 1.5e-85 320.9 374 47.3
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 4.4e-85 319.3 409 43.0
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 9.7e-85 318.2 427 42.2
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 1.3e-84 317.8 426 43.0
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 4.0e-78 296.2 331 46.5
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 1.5e-77 294.3 427 39.1
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 7.5e-77 292.0 427 38.4
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 7.7e-74 282.0 416 38.7
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 8.6e-73 278.5 410 40.5
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 1.5e-69 267.7 366 42.1
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.4e-67 261.2 376 40.7
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 7.8e-66 255.4 359 41.2
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 2.8e-63 246.9 342 43.3
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.3e-57 228.0 212 53.8
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 4.0e-54 216.5 264 46.2
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 8.9e-54 215.3 206 53.4
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.7e-52 211.1 425 33.4
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 4.7e-47 193.0 341 34.9
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 1.4e-46 191.4 429 31.0
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 2.3e-46 190.7 433 32.6
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 4.9e-44 183.0 183 47.0
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 1.2e-42 178.3 427 30.9
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 2.5e-40 170.6 463 28.5
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 8.9e-38 162.2 434 29.3
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 5.8e-37 159.5 157 53.5
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 1.7e-36 157.9 428 25.7
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 3.8e-36 156.8 487 28.1
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 7.1e-35 152.5 396 28.3
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 1.7e-33 147.9 436 28.2
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 1.2e-31 141.7 149 46.3
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 4.7e-31 139.8 438 29.2
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 4.6e-26 123.2 203 36.0
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.2e-21 108.6 241 31.5
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 1.9e-16 91.3 76 55.3
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-13 80.5 216 30.1
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 5.8e-13 79.7 85 42.4
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 9.9e-13 79.0 67 50.7
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 9.3e-11 72.4 61 55.7
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 3.5e-10 70.5 74 51.4
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.5e-10 70.5 221 29.9
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.5e-08 65.1 59 57.6
FvH4_3g40670 Fragaria vesca HOM05D005393 ORTHO05D006257 4.0e-06 57.0 51 49.0


User provided reference genes

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