Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 8.3e-79 297.0 150 100.0
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 2.5e-67 258.8 150 83.3
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 1.5e-64 249.6 150 82.0
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 1.9e-51 206.1 152 68.4
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 7.3e-51 204.1 122 80.3
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 8.1e-50 200.7 123 78.0
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 1.1e-49 200.3 153 65.4
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 1.4e-49 199.9 123 78.9
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 3.1e-49 198.7 121 78.5
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 3.1e-49 198.7 124 73.4
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 4.0e-49 198.4 153 64.1
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 4.0e-49 198.4 123 75.6
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 4.0e-49 198.4 125 79.2
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 5.2e-49 198.0 124 75.0
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 1.2e-48 196.8 155 67.1
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.2e-48 196.8 121 79.3
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.2e-48 196.8 146 70.5
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 1.2e-48 196.8 151 65.6
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 2.0e-48 196.1 147 65.3
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 2.6e-48 195.7 123 76.4
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 3.4e-48 195.3 146 70.5
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 4.4e-48 194.9 124 73.4
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 5.8e-48 194.5 127 74.8
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 9.9e-48 193.7 124 75.0
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 1.7e-47 193.0 124 76.6
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 1.7e-47 193.0 151 63.6
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 2.2e-47 192.6 127 75.6
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 2.9e-47 192.2 149 65.1
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 2.9e-47 192.2 127 72.4
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 2.9e-47 192.2 125 72.0
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 2.9e-47 192.2 126 73.0
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 2.9e-47 192.2 125 72.0
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 3.8e-47 191.8 124 73.4
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 3.8e-47 191.8 123 72.4
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 3.8e-47 191.8 123 73.2
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 4.9e-47 191.4 127 75.6
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 4.9e-47 191.4 150 63.3
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 4.9e-47 191.4 151 64.2
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 6.4e-47 191.0 121 77.7
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 6.4e-47 191.0 126 73.0
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 1.1e-46 190.3 128 71.1
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 1.1e-46 190.3 131 71.8
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 3.2e-46 188.7 123 69.9
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 3.2e-46 188.7 152 64.5
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 4.2e-46 188.3 146 65.8
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 5.4e-46 188.0 125 71.2
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 7.1e-46 187.6 125 76.0
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 7.1e-46 187.6 121 71.9
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 9.3e-46 187.2 151 61.6
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 1.2e-45 186.8 122 75.4
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 1.6e-45 186.4 124 77.4
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 2.1e-45 186.0 124 76.6
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 2.1e-45 186.0 120 73.3
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 2.1e-45 186.0 123 74.8
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 2.7e-45 185.7 121 71.9
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 4.6e-45 184.9 146 63.0
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 4.6e-45 184.9 124 76.6
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 4.6e-45 184.9 122 77.0
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 6.0e-45 184.5 124 76.6
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 6.0e-45 184.5 124 75.0
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 6.0e-45 184.5 125 73.6
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 7.8e-45 184.1 124 69.4
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 1.0e-44 183.7 153 62.1
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 3.9e-44 181.8 125 69.6
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 3.9e-44 181.8 123 72.4
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 5.1e-44 181.4 123 69.9
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 1.1e-43 180.3 123 69.9
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 1.9e-43 179.5 120 75.8
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 2.5e-43 179.1 123 70.7
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 7.3e-43 177.6 154 60.4
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 7.3e-43 177.6 154 60.4
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 1.3e-42 176.8 155 60.6
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 1.3e-42 176.8 123 69.1
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 1.6e-42 176.4 125 70.4
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 2.1e-42 176.0 114 75.4
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 6.2e-42 174.5 125 69.6
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 8.1e-42 174.1 148 60.8
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 1.4e-41 173.3 123 69.1
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 2.4e-41 172.6 148 60.1
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 2.4e-41 172.6 118 68.6
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 3.1e-41 172.2 124 68.5
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 3.1e-41 172.2 124 69.4
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 3.4e-40 168.7 125 64.8
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 5.8e-40 167.9 139 59.7
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 7.6e-40 167.5 127 64.6
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 1.3e-39 166.8 131 64.9
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 2.2e-39 166.0 126 63.5
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 2.2e-39 166.0 138 55.8
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 8.4e-39 164.1 121 71.1
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 1.4e-38 163.3 139 57.6
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 2.4e-38 162.5 126 65.1
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 2.4e-38 162.5 121 65.3
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 4.2e-38 161.8 125 61.6
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 5.4e-38 161.4 123 64.2
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 3.5e-37 158.7 123 62.6
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 3.5e-37 158.7 126 63.5
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 6.0e-37 157.9 123 66.7
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 1.8e-36 156.4 124 62.9
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 2.3e-36 156.0 126 61.9
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 2.3e-36 156.0 141 56.7
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 6.7e-36 154.5 125 60.8
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 4.3e-35 151.8 126 60.3
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 4.3e-35 151.8 121 62.0
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 4.3e-35 151.8 124 61.3
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 9.0e-33 144.1 124 62.9
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 1.8e-28 129.8 78 82.1
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 2.5e-27 125.9 123 54.5
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 2.5e-27 125.9 132 48.5
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 3.3e-27 125.6 123 54.5
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 9.6e-27 124.0 119 49.6
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 1.5e-24 116.7 124 48.4
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 6.5e-23 111.3 74 73.0
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 8.4e-23 110.9 106 53.8
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 1.4e-22 110.2 126 46.8
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 9.3e-22 107.5 136 45.6
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 9.3e-22 107.5 122 50.8
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 1.9e-19 99.8 118 49.2
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 5.3e-17 91.7 91 54.9
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 6.9e-17 91.3 81 53.1
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 1.2e-16 90.5 116 39.7
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 8.5e-15 84.3 117 41.0
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 2.7e-13 79.3 120 40.8
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 4.8e-10 68.6 74 52.7
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.9e-06 56.6 49 65.3
SEGI_35230 Sequoiadendron giganteum HOM05D006402 ORTHO05D387249 5.5e-06 55.1 46 52.2


User provided reference genes

Program Settings