Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 2.9e-207 724.9 355 100.0
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 1.9e-113 413.3 352 63.1
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 2.3e-111 406.4 351 62.1
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 1.1e-108 397.5 351 61.5
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 9.0e-108 394.4 380 57.6
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 6.5e-106 388.3 353 58.4
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 9.4e-105 384.4 353 57.8
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 2.7e-104 382.9 354 58.5
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 2.7e-104 382.9 353 57.5
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 3.6e-104 382.5 353 57.8
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 6.1e-104 381.7 353 57.5
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 7.9e-104 381.3 353 57.5
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.0e-103 380.9 353 57.2
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 2.3e-103 379.8 346 58.7
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 1.5e-102 377.1 349 57.9
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 3.3e-102 375.9 353 56.7
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 4.3e-102 375.6 349 55.6
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 5.7e-102 375.2 351 57.0
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 7.4e-102 374.8 351 56.1
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 7.4e-102 374.8 349 57.0
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 1.7e-101 373.6 350 56.6
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.7e-101 373.6 351 56.4
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 2.2e-101 373.2 349 56.7
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 2.2e-101 373.2 347 57.1
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 3.7e-101 372.5 347 57.1
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 4.8e-101 372.1 351 56.1
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 8.2e-101 371.3 349 56.4
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 8.2e-101 371.3 348 56.3
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 8.2e-101 371.3 348 56.6
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 1.4e-100 370.5 351 56.1
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 1.4e-100 370.5 348 56.9
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.8e-100 370.2 348 54.9
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.8e-100 370.2 348 54.9
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 2.4e-100 369.8 348 54.6
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 2.4e-100 369.8 348 54.9
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 2.4e-100 369.8 354 55.1
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 4.1e-100 369.0 349 56.2
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 4.1e-100 369.0 349 56.2
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 5.3e-100 368.6 348 55.7
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 6.9e-100 368.2 348 56.3
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 9.1e-100 367.9 349 56.4
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 9.1e-100 367.9 349 53.6
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 9.1e-100 367.9 348 56.3
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.2e-99 367.5 350 55.4
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 1.5e-99 367.1 348 56.6
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 1.5e-99 367.1 351 55.6
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.5e-99 367.1 353 55.2
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 2.6e-99 366.3 348 56.0
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 2.6e-99 366.3 346 55.8
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 3.4e-99 365.9 349 55.9
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 4.5e-99 365.5 347 56.2
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 4.5e-99 365.5 346 56.1
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 5.9e-99 365.2 351 54.7
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 5.9e-99 365.2 348 54.9
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 5.9e-99 365.2 354 54.8
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 7.7e-99 364.8 347 55.6
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 7.7e-99 364.8 351 55.3
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 7.7e-99 364.8 353 55.0
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 1.0e-98 364.4 347 56.2
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 1.7e-98 363.6 352 55.7
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 2.2e-98 363.2 350 54.9
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 2.9e-98 362.8 351 54.7
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 2.9e-98 362.8 350 55.7
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 3.8e-98 362.5 347 54.8
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 3.8e-98 362.5 347 55.3
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 5.0e-98 362.1 350 54.3
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 5.0e-98 362.1 348 55.2
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 5.0e-98 362.1 349 55.0
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 6.5e-98 361.7 350 55.1
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 6.5e-98 361.7 350 55.1
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 6.5e-98 361.7 350 55.1
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 6.5e-98 361.7 350 55.1
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 8.5e-98 361.3 348 55.2
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 8.5e-98 361.3 350 55.1
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 8.5e-98 361.3 347 55.6
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 1.1e-97 360.9 350 54.3
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 1.1e-97 360.9 350 54.9
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 1.1e-97 360.9 350 54.9
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 1.1e-97 360.9 348 55.7
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 1.1e-97 360.9 348 54.9
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 1.1e-97 360.9 349 55.3
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 1.1e-97 360.9 346 54.9
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 1.4e-97 360.5 389 51.4
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 1.4e-97 360.5 348 54.9
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.4e-97 360.5 351 54.4
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 1.9e-97 360.1 351 55.3
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.9e-97 360.1 351 54.4
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 2.5e-97 359.8 350 54.9
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 3.2e-97 359.4 350 54.6
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 4.2e-97 359.0 347 54.5
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 4.2e-97 359.0 350 54.6
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 4.2e-97 359.0 347 54.5
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 4.2e-97 359.0 350 54.9
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 5.5e-97 358.6 352 54.8
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 5.5e-97 358.6 350 54.9
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 9.4e-97 357.8 350 54.6
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 9.4e-97 357.8 349 54.4
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 9.4e-97 357.8 252 68.7
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 1.2e-96 357.5 350 54.9
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 1.2e-96 357.5 350 53.7
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 1.6e-96 357.1 350 54.6
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 2.1e-96 356.7 354 54.0
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 2.7e-96 356.3 349 53.9
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 2.7e-96 356.3 346 55.2
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 2.7e-96 356.3 349 52.7
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 3.6e-96 355.9 350 54.6
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 3.6e-96 355.9 349 52.7
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 4.7e-96 355.5 346 54.9
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 4.7e-96 355.5 346 54.6
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 4.7e-96 355.5 346 54.6
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 1.0e-95 354.4 352 54.0
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 3.9e-95 352.4 224 75.4
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 6.7e-95 351.7 227 78.0
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 6.7e-95 351.7 348 54.3
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 8.8e-95 351.3 352 54.3
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 1.1e-94 350.9 222 77.5
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.5e-94 350.5 226 75.2
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 2.6e-94 349.7 349 53.9
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 3.3e-94 349.4 353 53.8
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 4.4e-94 349.0 350 53.4
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 5.7e-94 348.6 352 54.0
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 9.7e-94 347.8 221 76.5
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 1.7e-93 347.1 348 53.4
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 2.8e-93 346.3 354 52.5
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 3.7e-93 345.9 352 52.6
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.8e-93 345.5 224 74.6
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 1.1e-92 344.4 349 53.6
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 1.5e-91 340.5 384 50.3
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 4.5e-91 339.0 329 55.0
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 1.0e-90 337.8 332 53.0
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 1.3e-90 337.4 225 72.4
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 1.3e-90 337.4 344 52.0
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 8.5e-90 334.7 325 55.1
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 1.9e-89 333.6 223 73.1
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 4.2e-89 332.4 328 54.0
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 7.2e-89 331.6 344 51.7
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 2.1e-88 330.1 352 49.7
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 2.7e-88 329.7 352 49.7
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 1.0e-87 327.8 231 68.0
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.0e-87 326.2 355 52.1
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 5.2e-87 325.5 224 73.7
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 2.0e-86 323.6 214 76.6
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 2.2e-85 320.1 348 49.4
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 5.5e-81 305.4 347 45.8
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 2.7e-80 303.1 198 73.7
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 5.7e-78 295.4 346 46.5
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 9.7e-78 294.7 281 58.4
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 2.4e-76 290.0 195 75.4
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 1.2e-75 287.7 292 52.4
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 4.5e-75 285.8 338 45.6
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 2.2e-74 283.5 227 65.6
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 1.8e-71 273.9 292 49.7
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 2.9e-66 256.5 166 75.3
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 2.0e-62 243.8 161 73.3
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 2.2e-61 240.4 230 50.0
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 3.7e-61 239.6 127 88.2
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 4.9e-61 239.2 341 44.0
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 4.1e-60 236.1 243 49.8
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 5.4e-60 235.7 253 49.8
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 7.8e-59 231.9 241 50.2
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 1.0e-55 221.5 223 54.7
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.2e-52 209.9 116 81.9
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 1.2e-48 198.0 243 44.9
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.4e-47 194.5 241 46.1
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 7.8e-43 178.7 212 44.8
Cpa.g.c46781 Carica papaya HOM05D003698 ORTHO05D004320 8.6e-42 175.3 96 86.5
Cpa.g.c40434 Carica papaya HOM05D003698 ORTHO05D004320 2.3e-39 167.2 126 70.6
RcHm_v2.0_Chr1g0364561 Rosa chinensis HOM05D003698 ORTHO05D004320 9.6e-33 145.2 103 70.9
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 3.4e-30 136.7 72 81.9
TPR.G40455 Trifolium pratense HOM05D003698 ORTHO05D004320 3.2e-28 130.2 82 75.6
MBI17_g19515_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 3.5e-27 126.7 80 73.8
Prupe.8G033900 Prunus persica HOM05D003698 ORTHO05D004320 1.3e-24 118.2 181 37.6
RcHm_v2.0_Chr4g0404481 Rosa chinensis HOM05D003698 ORTHO05D004320 1.1e-23 115.2 82 68.3
RcHm_v2.0_Chr5g0045001 Rosa chinensis HOM05D003698 ORTHO05D004320 4.9e-21 106.3 85 65.9
CANSAT25G0181 Cannabis sativa HOM05D003698 ORTHO05D004320 5.4e-20 102.8 55 78.2
TPR.G18261 Trifolium pratense HOM05D003698 ORTHO05D004320 6.0e-19 99.4 82 63.4
CAN.G134.80 Capsicum annuum HOM05D003698 ORTHO05D004320 3.9e-18 96.7 57 82.5
CSS0029944 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.5e-11 73.6 82 51.2
Haze_05812 Corylus avellana HOM05D003698 ORTHO05D004320 3.5e-11 73.6 43 81.4
Hund27303 Selenicereus undatus HOM05D000402 ORTHO05D000263 4.6e-11 73.2 34 97.1
PGR044G1122 Punica granatum HOM05D003698 ORTHO05D004320 3.0e-10 70.5 126 39.7
TAR636G2570 Trochodendron aralioides HOM05D003698 ORTHO05D004320 7.4e-09 65.9 73 52.1
ClCG03G012620 Citrullus lanatus HOM05D003698 ORTHO05D004320 2.1e-08 64.3 34 76.5
TPR.G42 Trifolium pratense HOM05D003698 ORTHO05D004320 6.2e-08 62.8 30 80.0
CANSAT11G2537 Cannabis sativa HOM05D003698 ORTHO05D004320 1.4e-07 61.6 30 76.7


User provided reference genes

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