Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 5.2e-60 234.2 119 100.0
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 2.9e-50 201.8 110 90.0
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 9.0e-44 180.3 108 83.3
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 2.0e-43 179.1 108 82.4
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 4.9e-42 174.5 108 80.6
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 6.4e-42 174.1 108 80.6
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 2.7e-40 168.7 117 71.8
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 3.5e-40 168.3 108 75.9
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 4.6e-40 167.9 106 82.1
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 1.0e-39 166.8 108 77.8
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 1.3e-39 166.4 118 71.2
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 1.3e-39 166.4 108 76.9
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 2.3e-39 165.6 108 75.9
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 2.3e-39 165.6 108 74.1
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 2.3e-39 165.6 106 81.1
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 3.9e-39 164.9 108 75.9
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 3.9e-39 164.9 108 75.9
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 5.1e-39 164.5 107 73.8
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 6.7e-39 164.1 106 80.2
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 6.7e-39 164.1 106 80.2
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 6.7e-39 164.1 106 80.2
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 6.7e-39 164.1 108 72.2
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 6.7e-39 164.1 108 73.1
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 6.7e-39 164.1 108 74.1
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 8.7e-39 163.7 107 77.6
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 1.1e-38 163.3 106 80.2
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 1.1e-38 163.3 109 72.5
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 1.1e-38 163.3 109 73.4
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 1.5e-38 162.9 106 80.2
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 1.9e-38 162.5 106 76.4
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 2.5e-38 162.2 106 79.2
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 3.3e-38 161.8 106 79.2
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 3.3e-38 161.8 108 75.9
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 4.3e-38 161.4 106 79.2
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 5.6e-38 161.0 106 79.2
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 5.6e-38 161.0 106 79.2
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 5.6e-38 161.0 103 76.7
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 5.6e-38 161.0 103 76.7
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 5.6e-38 161.0 106 75.5
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 9.6e-38 160.2 106 78.3
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 1.3e-37 159.8 108 72.2
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 1.3e-37 159.8 108 72.2
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 1.3e-37 159.8 109 71.6
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 1.3e-37 159.8 103 77.7
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 1.6e-37 159.5 108 72.2
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 1.6e-37 159.5 108 76.9
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 2.1e-37 159.1 108 75.0
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 4.8e-37 157.9 102 76.5
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 4.8e-37 157.9 108 74.1
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 4.8e-37 157.9 108 74.1
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 4.8e-37 157.9 108 74.1
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 4.8e-37 157.9 108 74.1
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 1.1e-36 156.8 100 76.0
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 1.4e-36 156.4 102 76.5
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 1.4e-36 156.4 108 73.1
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 1.4e-36 156.4 100 76.0
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 1.8e-36 156.0 100 76.0
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 5.3e-36 154.5 105 72.4
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 6.9e-36 154.1 106 71.7
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 9.0e-36 153.7 108 72.2
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 1.2e-35 153.3 102 73.5
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 1.2e-35 153.3 109 72.5
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 1.5e-35 152.9 108 69.4
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 2.0e-35 152.5 102 76.5
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 2.0e-35 152.5 106 69.8
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 4.5e-35 151.4 111 68.5
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 4.5e-35 151.4 102 72.5
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 5.8e-35 151.0 101 73.3
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 1.3e-34 149.8 109 70.6
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 4.9e-34 147.9 109 68.8
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 4.9e-34 147.9 108 68.5
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 8.4e-34 147.1 108 66.7
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 1.4e-33 146.4 103 72.8
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 2.5e-33 145.6 102 71.6
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 3.2e-33 145.2 117 65.8
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 7.1e-33 144.1 102 70.6
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 9.3e-33 143.7 115 64.3
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 9.3e-33 143.7 104 73.1
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 1.2e-32 143.3 102 69.6
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 3.5e-32 141.7 102 70.6
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 3.5e-32 141.7 110 64.5
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 4.6e-32 141.4 105 67.6
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 6.0e-32 141.0 106 69.8
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 6.0e-32 141.0 108 67.6
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 3.9e-31 138.3 111 65.8
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 5.1e-31 137.9 111 65.8
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 7.4e-30 134.0 102 66.7
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 1.0e-26 123.6 104 59.6
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 2.9e-26 122.1 110 59.1
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 5.5e-25 117.9 78 74.4
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 3.5e-24 115.2 103 57.3
BcaB07g33555 Brassica carinata HOM05D007184 ORTHO05D008987 3.0e-23 112.1 79 70.9
Thhalv10012149m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 2.2e-21 105.9 71 71.8
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 8.2e-21 104.0 101 52.5
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 1.1e-20 103.6 108 50.0
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 4.5e-19 98.2 71 67.6
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 4.6e-16 88.2 60 75.0
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 1.4e-15 86.7 104 51.9
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 1.3e-13 80.1 51 78.4
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 6.9e-12 74.3 62 56.5
SEGI_35792 Sequoiadendron giganteum HOM05D007184 ORTHO05D008987 1.3e-10 70.1 79 46.8
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 6.1e-08 61.2 41 75.6
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 3.9e-07 58.5 41 73.2
Sc03g0008980 Simmondsia chinensis HOM05D007184 ORTHO05D008987 8.8e-07 57.4 40 67.5
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 2.6e-06 55.8 48 58.3


User provided reference genes

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