Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01993 Beta vulgaris HOM05D003912 ORTHO05D004409 1.3e-67 259.6 134 100.0
EL10Ac2g03910 Beta vulgaris HOM05D003912 ORTHO05D004409 3.5e-36 155.2 80 92.5
AUR62018591 Chenopodium quinoa HOM05D003912 ORTHO05D004409 4.9e-30 134.8 81 79.0
AUR62020827 Chenopodium quinoa HOM05D003912 ORTHO05D004409 2.0e-28 129.4 81 75.3
Prupe.1G008700 Prunus persica HOM05D003912 ORTHO05D004409 1.4e-21 106.7 81 66.7
Manes.03G147300 Manihot esculenta HOM05D003912 ORTHO05D004409 4.1e-21 105.1 80 65.0
FAN12G1567 Fragaria x ananassa HOM05D003912 ORTHO05D004409 9.2e-21 104.0 78 66.7
Sed0005652 Sechium edule HOM05D003912 ORTHO05D004409 1.2e-20 103.6 82 61.0
Hund18994 Selenicereus undatus HOM05D003912 ORTHO05D004409 1.2e-20 103.6 71 67.6
Duzib212G0883 Durio zibethinus HOM05D003912 ORTHO05D004409 1.6e-20 103.2 77 63.6
Lj6g0024996 Lotus japonicus HOM05D003912 ORTHO05D004409 2.1e-20 102.8 96 54.2
Thecc.04G203100 Theobroma cacao HOM05D003912 ORTHO05D004409 2.1e-20 102.8 77 64.9
GSVIVG01021053001 Vitis vinifera HOM05D003912 ORTHO05D004409 2.1e-20 102.8 95 54.7
FvH4_4g16490 Fragaria vesca HOM05D003912 ORTHO05D004409 2.7e-20 102.4 78 65.4
FAN07G1879 Fragaria x ananassa HOM05D003912 ORTHO05D004409 2.7e-20 102.4 78 65.4
MELO3C006310.2 Cucumis melo HOM05D003912 ORTHO05D004409 6.0e-20 101.3 79 63.3
FAN22G2235 Fragaria x ananassa HOM05D003912 ORTHO05D004409 6.0e-20 101.3 78 64.1
arahy.Tifrunner.gnm1.ann1.2BAE9R Arachis hypogaea HOM05D003912 ORTHO05D004409 7.8e-20 100.9 76 64.5
ClCG05G003290 Citrullus lanatus HOM05D003912 ORTHO05D004409 7.8e-20 100.9 94 57.4
CsaV3_3G010910 Cucumis sativus L. HOM05D003912 ORTHO05D004409 7.8e-20 100.9 79 63.3
FAN17G2369 Fragaria x ananassa HOM05D003912 ORTHO05D004409 7.8e-20 100.9 78 65.4
arahy.Tifrunner.gnm1.ann1.1SB5R1 Arachis hypogaea HOM05D003912 ORTHO05D004409 1.3e-19 100.1 76 64.5
RcHm_v2.0_Chr4g0415171 Rosa chinensis HOM05D003912 ORTHO05D004409 1.3e-19 100.1 78 64.1
Manes.15G054100 Manihot esculenta HOM05D003912 ORTHO05D004409 1.7e-19 99.8 80 60.0
Carub.0004s1415 Capsella rubella HOM05D003912 ORTHO05D004409 2.3e-19 99.4 78 60.3
Aqoxy2G03850 Aquilegia oxysepala HOM05D003912 ORTHO05D004409 3.0e-19 99.0 80 58.8
MD13G1284700 Malus domestica HOM05D003912 ORTHO05D004409 5.1e-19 98.2 95 55.8
Ciclev10004226m.g Citrus clementina HOM05D003912 ORTHO05D004409 8.6e-19 97.4 78 62.8
Lj6C552G3 Lonicera japonica HOM05D003912 ORTHO05D004409 1.5e-18 96.7 80 58.8
MD04G1009400 Malus domestica HOM05D003912 ORTHO05D004409 1.5e-18 96.7 81 59.3
CSS0014108 Camellia sinensis var. sinensis HOM05D003912 ORTHO05D004409 2.5e-18 95.9 75 64.0
Psat5g101840 Pisum sativum HOM05D003912 ORTHO05D004409 2.5e-18 95.9 73 61.6
SEGI_05196 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 2.5e-18 95.9 78 60.3
Haze_11613 Corylus avellana HOM05D003912 ORTHO05D004409 3.3e-18 95.5 77 62.3
AT2G32780 Arabidopsis thaliana HOM05D003912 ORTHO05D004409 4.3e-18 95.1 80 53.8
Cc03_g07890 Coffea canephora HOM05D003912 ORTHO05D004409 4.3e-18 95.1 77 61.0
Medtr3g083600 Medicago truncatula HOM05D003912 ORTHO05D004409 4.3e-18 95.1 72 62.5
Potri.017G055600 Populus trichocarpa HOM05D003912 ORTHO05D004409 4.3e-18 95.1 80 56.2
CiPaw.01G120700 Carya illinoinensis HOM05D003912 ORTHO05D004409 5.6e-18 94.7 77 62.3
Gohir.D02G124000 Gossypium hirsutum HOM05D003912 ORTHO05D004409 5.6e-18 94.7 77 61.0
Gorai.005G130100 Gossypium raimondii HOM05D003912 ORTHO05D004409 5.6e-18 94.7 77 61.0
Sabra17G0047100 Salix brachista HOM05D003912 ORTHO05D004409 5.6e-18 94.7 80 57.5
Thhalv10006716m.g Eutrema salsugineum HOM05D003912 ORTHO05D004409 7.3e-18 94.4 75 61.3
Nn1g07894 Nelumbo nucifera HOM05D003912 ORTHO05D004409 7.3e-18 94.4 77 63.6
TPR.G19333 Trifolium pratense HOM05D003912 ORTHO05D004409 7.3e-18 94.4 71 64.8
AL4G28230 Arabidopsis lyrata HOM05D003912 ORTHO05D004409 9.5e-18 94.0 80 55.0
C08p52040 Brassica napus HOM05D003912 ORTHO05D004409 9.5e-18 94.0 80 56.2
BolC8t52736H Brassica oleracea HOM05D003912 ORTHO05D004409 9.5e-18 94.0 80 56.2
BcaC07g42158 Brassica carinata HOM05D003912 ORTHO05D004409 1.2e-17 93.6 80 56.2
Sed0023360 Sechium edule HOM05D003912 ORTHO05D004409 1.2e-17 93.6 79 59.5
Ca_16382_v3 Cicer arietinum L. HOM05D003912 ORTHO05D004409 2.8e-17 92.4 72 63.9
Glyma.11G256600 Glycine max HOM05D003912 ORTHO05D004409 2.8e-17 92.4 72 65.3
Peaxi162Scf00423g00315 Petunia axillaris HOM05D003912 ORTHO05D004409 2.8e-17 92.4 94 55.3
TWI09G1517 Tripterygium wilfordii HOM05D003912 ORTHO05D004409 2.8e-17 92.4 76 61.8
TWI73G0783 Tripterygium wilfordii HOM05D003912 ORTHO05D004409 2.8e-17 92.4 80 58.8
QL06p025007 Quercus lobata HOM05D003912 ORTHO05D004409 3.6e-17 92.0 80 55.0
Glyma.18G000500 Glycine max HOM05D003912 ORTHO05D004409 4.7e-17 91.7 71 64.8
Atru.chr4.1690 Acer truncatum HOM05D003912 ORTHO05D004409 6.2e-17 91.3 78 57.7
BcaB03g13468 Brassica carinata HOM05D003912 ORTHO05D004409 6.2e-17 91.3 72 59.7
Oeu049032.1 Olea europaea HOM05D003912 ORTHO05D004409 6.2e-17 91.3 81 55.6
Phvul.001G268800 Phaseolus vulgaris HOM05D003912 ORTHO05D004409 6.2e-17 91.3 72 63.9
Sp1g03710 Schrenkiella parvula HOM05D003912 ORTHO05D004409 6.2e-17 91.3 80 53.8
AL1G14580 Arabidopsis lyrata HOM05D003912 ORTHO05D004409 8.1e-17 90.9 75 60.0
Eucgr.H02776 Eucalyptus grandis HOM05D003912 ORTHO05D004409 8.1e-17 90.9 75 58.7
Lalb_Chr08g0230331 Lupinus albus HOM05D003912 ORTHO05D004409 8.1e-17 90.9 76 60.5
BraA05t20221Z Brassica rapa HOM05D003912 ORTHO05D004409 1.1e-16 90.5 80 53.8
AT1G04860 Arabidopsis thaliana HOM05D003912 ORTHO05D004409 1.4e-16 90.1 80 55.0
Nn3g20024 Nelumbo nucifera HOM05D003912 ORTHO05D004409 1.4e-16 90.1 75 64.0
Aa31LG5G4440 Aethionema arabicum HOM05D003912 ORTHO05D004409 1.8e-16 89.7 72 58.3
A08p36670 Brassica napus HOM05D003912 ORTHO05D004409 1.8e-16 89.7 80 52.5
BraA08t35570Z Brassica rapa HOM05D003912 ORTHO05D004409 1.8e-16 89.7 80 52.5
CARHR004250 Cardamine hirsuta HOM05D003912 ORTHO05D004409 1.8e-16 89.7 75 58.7
PGSC0003DMG400031289 Solanum tuberosum HOM05D003912 ORTHO05D004409 1.8e-16 89.7 71 66.2
HPP92_013626 Vanilla planifolia HOM05D003912 ORTHO05D004409 1.8e-16 89.7 75 60.0
BcaC07g36874 Brassica carinata HOM05D003912 ORTHO05D004409 2.3e-16 89.4 80 55.0
C08p01540 Brassica napus HOM05D003912 ORTHO05D004409 2.3e-16 89.4 80 55.0
BolC8t46959H Brassica oleracea HOM05D003912 ORTHO05D004409 2.3e-16 89.4 80 55.0
Nitab4.5_0007416g0010 Nicotiana tabacum HOM05D003912 ORTHO05D004409 2.3e-16 89.4 71 64.8
Nitab4.5_0006297g0020 Nicotiana tabacum HOM05D003912 ORTHO05D004409 3.1e-16 89.0 71 63.4
C04p16750 Brassica napus HOM05D003912 ORTHO05D004409 4.0e-16 88.6 79 55.7
Os09g0505100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 4.0e-16 88.6 80 55.0
PGR083G0566 Punica granatum HOM05D003912 ORTHO05D004409 4.0e-16 88.6 72 61.1
BolC4t23225H Brassica oleracea HOM05D003912 ORTHO05D004409 5.2e-16 88.2 80 53.8
CAN.G1635.11 Capsicum annuum HOM05D003912 ORTHO05D004409 5.2e-16 88.2 71 63.4
Nitab4.5_0002260g0180 Nicotiana tabacum HOM05D003912 ORTHO05D004409 5.2e-16 88.2 94 52.1
Peaxi162Scf00047g00430 Petunia axillaris HOM05D003912 ORTHO05D004409 5.2e-16 88.2 71 63.4
BraA09t42101Z Brassica rapa HOM05D003912 ORTHO05D004409 6.8e-16 87.8 80 52.5
SMO244G0088 Selaginella moellendorffii HOM05D000344 ORTHO05D004409 6.8e-16 87.8 77 58.4
SEGI_16543 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 6.8e-16 87.8 78 55.1
Solyc09g091930.3 Solanum lycopersicum HOM05D003912 ORTHO05D004409 6.8e-16 87.8 71 63.4
Sopen09g034830 Solanum pennellii HOM05D003912 ORTHO05D004409 6.8e-16 87.8 71 63.4
TWI09G0574 Tripterygium wilfordii HOM05D003912 ORTHO05D004409 8.9e-16 87.4 76 59.2
COL.COLO4_20146 Corchorus olitorius HOM05D003912 ORTHO05D004409 1.2e-15 87.0 66 62.1
Solyc05g053690.2 Solanum lycopersicum HOM05D003912 ORTHO05D004409 1.2e-15 87.0 77 57.1
Carub.0001s0410 Capsella rubella HOM05D003912 ORTHO05D004409 1.5e-15 86.7 77 55.8
PSO541G1554 Papaver somniferum HOM05D003912 ORTHO05D004409 1.5e-15 86.7 80 55.0
Aa31LG1G19870 Aethionema arabicum HOM05D003912 ORTHO05D004409 2.6e-15 85.9 72 59.7
Sopen05g032180 Solanum pennellii HOM05D003912 ORTHO05D004409 2.6e-15 85.9 77 57.1
ECA248G0878 Erigeron canadensis HOM05D003912 ORTHO05D004409 3.4e-15 85.5 93 50.5
PSO675G6815 Papaver somniferum HOM05D003912 ORTHO05D004409 4.4e-15 85.1 71 60.6
Pp3c19_20640 Physcomitrium patens HOM05D003912 ORTHO05D004409 4.4e-15 85.1 95 45.3
TAR636G0234 Trochodendron aralioides HOM05D003912 ORTHO05D004409 4.4e-15 85.1 80 53.8
Actinidia39238 Actinidia chinensis HOM05D003912 ORTHO05D004409 5.8e-15 84.7 80 58.8
A09p67710 Brassica napus HOM05D003912 ORTHO05D004409 5.8e-15 84.7 80 53.8
Mapoly0123s0038 Marchantia polymorpha HOM05D003912 ORTHO05D004409 5.8e-15 84.7 74 55.4
Pp3c18_14990 Physcomitrium patens HOM05D003912 ORTHO05D004409 5.8e-15 84.7 72 54.2
Rhsim02G0058800 Rhododendron simsii HOM05D003912 ORTHO05D004409 5.8e-15 84.7 76 57.9
PGSC0003DMG401015759 Solanum tuberosum HOM05D003912 ORTHO05D004409 5.8e-15 84.7 77 55.8
ECA233G4597 Erigeron canadensis HOM05D003912 ORTHO05D004409 7.6e-15 84.3 76 57.9
Lsat_1_v5_gn_1_72160 Lactuca sativa HOM05D003912 ORTHO05D004409 7.6e-15 84.3 76 56.6
CAN.G765.21 Capsicum annuum HOM05D003912 ORTHO05D004409 1.3e-14 83.6 73 60.3
HanXRQChr01g0022461 Helianthus annuus HOM05D003912 ORTHO05D004409 1.3e-14 83.6 77 54.5
MSTRG.4227 Avicennia marina HOM05D003912 ORTHO05D004409 1.7e-14 83.2 81 55.6
THA.LOC104826119 Tarenaya hassleriana HOM05D003912 ORTHO05D004409 1.7e-14 83.2 71 59.2
THA.LOC104801027 Tarenaya hassleriana HOM05D003912 ORTHO05D004409 2.2e-14 82.8 72 56.9
Migut.G00711 Erythranthe guttata HOM05D003912 ORTHO05D004409 2.9e-14 82.4 80 50.0
Lsat_1_v5_gn_6_60801 Lactuca sativa HOM05D003912 ORTHO05D004409 3.7e-14 82.0 87 51.7
Oeu055784.1 Olea europaea HOM05D003912 ORTHO05D004409 3.7e-14 82.0 72 56.9
Pp3c22_11200 Physcomitrium patens HOM05D003912 ORTHO05D004409 3.7e-14 82.0 72 54.2
SalBow3G1138 Salvia bowleyana HOM05D003912 ORTHO05D004409 6.4e-14 81.3 79 53.2
ATR0609G080 Amborella trichopoda HOM05D003912 ORTHO05D004409 8.4e-14 80.9 77 53.2
CARHR126680 Cardamine hirsuta HOM05D003912 ORTHO05D004409 1.1e-13 80.5 77 48.1
Nitab4.5_0003502g0040 Nicotiana tabacum HOM05D003912 ORTHO05D004409 1.4e-13 80.1 82 53.7
Actinidia27226 Actinidia chinensis HOM05D003912 ORTHO05D004409 1.9e-13 79.7 80 53.8
Sabra17G0049300 Salix brachista HOM05D003912 ORTHO05D004409 2.4e-13 79.3 69 56.5
unitig_747.g21697 Utricularia gibba HOM05D003912 ORTHO05D004409 2.4e-13 79.3 70 58.6
Zm00001eb102350 Zea mays HOM05D003912 ORTHO05D004409 1.6e-12 76.6 71 52.1
TAR365G1117 Trochodendron aralioides HOM05D003912 ORTHO05D004409 3.5e-12 75.5 69 53.6
SGA_v2.0_scaffold626G53246 Striga asiatica HOM05D003912 ORTHO05D004409 4.6e-12 75.1 72 52.8
Os08g0528100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 6.0e-12 74.7 80 50.0
vmacro15538 Vaccinium macrocarpon HOM05D003912 ORTHO05D004409 7.8e-12 74.3 64 60.9
Migut.N00208 Erythranthe guttata HOM05D003912 ORTHO05D004409 1.0e-11 73.9 72 51.4
Os08g0527900 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 1.7e-11 73.2 80 50.0
PSO832G3940 Papaver somniferum HOM05D003912 ORTHO05D004409 2.3e-11 72.8 99 45.5
Os08g0528000 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 5.1e-11 71.6 80 48.8
Os08g0527100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 8.6e-11 70.9 80 46.2
BcaB01g00970 Brassica carinata HOM05D003912 ORTHO05D004409 1.1e-10 70.5 78 47.4
PSO832G1963 Papaver somniferum HOM05D003912 ORTHO05D004409 1.1e-10 70.5 95 45.3
PSO832G3643 Papaver somniferum HOM05D000344 ORTHO05D004409 1.1e-10 70.5 95 45.3
Zm00001eb175050 Zea mays HOM05D003912 ORTHO05D004409 1.9e-10 69.7 81 48.1
A05p12820 Brassica napus HOM05D003912 ORTHO05D004409 7.3e-10 67.8 62 51.6
TAR362G0116 Trochodendron aralioides HOM05D003912 ORTHO05D004409 2.8e-09 65.9 59 57.6
PSO832G3564 Papaver somniferum HOM05D003912 ORTHO05D004409 3.6e-09 65.5 100 40.0
Cre12.g533250 Chlamydomonas reinhardtii HOM05D003912 ORTHO05D004409 6.2e-09 64.7 73 43.8
Migut.C00390 Erythranthe guttata HOM05D003912 ORTHO05D004409 8.1e-09 64.3 81 42.0
Sabra16G0199600 Salix brachista HOM05D003912 ORTHO05D004409 1.4e-08 63.5 78 43.6
VMungo0251G2144 Vigna mungo HOM05D006162 ORTHO05D007627 2.4e-08 62.8 81 43.2
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 2.6e-07 59.3 76 43.4
BcaB06g25388 Brassica carinata HOM05D000344 ORTHO05D005714 4.4e-07 58.5 90 38.9
Prupe.6G165900 Prunus persica HOM05D006162 ORTHO05D007627 4.4e-07 58.5 78 42.3
Phvul.002G267600 Phaseolus vulgaris HOM05D006162 ORTHO05D007627 9.9e-07 57.4 82 39.0
SEGI_06521 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 9.9e-07 57.4 61 47.5
BcaC05g29086 Brassica carinata HOM05D000344 ORTHO05D005714 1.3e-06 57.0 90 37.8
BraA05t22313Z Brassica rapa HOM05D000344 ORTHO05D005714 1.3e-06 57.0 90 37.8
TPR.G2184 Trifolium pratense HOM05D006162 ORTHO05D007627 1.7e-06 56.6 79 38.0
Os11g0619500 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 2.9e-06 55.8 72 45.8
AUR62003642 Chenopodium quinoa HOM05D006162 ORTHO05D007627 3.8e-06 55.5 74 37.8
MELO3C020973.2 Cucumis melo HOM05D006162 ORTHO05D007627 3.8e-06 55.5 76 36.8
AUR62017952 Chenopodium quinoa HOM05D006162 ORTHO05D007627 4.9e-06 55.1 74 37.8
AUR62044023 Chenopodium quinoa HOM05D006162 ORTHO05D007627 4.9e-06 55.1 74 37.8
arahy.Tifrunner.gnm1.ann1.QP02N2 Arachis hypogaea HOM05D006162 ORTHO05D007627 6.4e-06 54.7 86 37.2
C05p52940 Brassica napus HOM05D000344 ORTHO05D005714 6.4e-06 54.7 90 36.7
BolC5t33971H Brassica oleracea HOM05D000344 ORTHO05D005714 6.4e-06 54.7 90 36.7
Ca_17673_v3 Cicer arietinum L. HOM05D006162 ORTHO05D007627 8.4e-06 54.3 81 38.3
PRCOL_00006193 Prasinoderma coloniale HOM05D000344 ORTHO05D000934 8.4e-06 54.3 72 40.3


User provided reference genes

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