Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01976 Beta vulgaris HOM05D004614 ORTHO05D005339 3.7e-73 278.1 138 100.0
CARHR292380 Cardamine hirsuta HOM05D004614 ORTHO05D005339 4.4e-58 228.0 112 90.2
Sc15g0004500 Simmondsia chinensis HOM05D004614 ORTHO05D005339 3.2e-53 211.8 130 79.2
AUR62036884 Chenopodium quinoa HOM05D004614 ORTHO05D005339 4.2e-53 211.5 130 78.5
Migut.C00954 Erythranthe guttata HOM05D004614 ORTHO05D005339 2.3e-51 205.7 110 86.4
Cfa014064 Carpinus fangiana HOM05D004614 ORTHO05D005339 1.1e-50 203.4 111 84.7
Aa31LG8G13830 Aethionema arabicum HOM05D004614 ORTHO05D005339 1.5e-50 203.0 111 83.8
AL1G51310 Arabidopsis lyrata HOM05D004614 ORTHO05D005339 2.0e-50 202.6 111 82.9
AT1G42430 Arabidopsis thaliana HOM05D004614 ORTHO05D005339 2.0e-50 202.6 111 82.9
BcaB04g17805 Brassica carinata HOM05D004614 ORTHO05D005339 2.0e-50 202.6 111 82.9
BcaC07g37479 Brassica carinata HOM05D004614 ORTHO05D005339 2.0e-50 202.6 111 82.9
A08p07800 Brassica napus HOM05D004614 ORTHO05D005339 2.0e-50 202.6 111 82.9
C08p09450 Brassica napus HOM05D004614 ORTHO05D005339 2.0e-50 202.6 111 82.9
BolC8t47801H Brassica oleracea HOM05D004614 ORTHO05D005339 2.0e-50 202.6 111 82.9
BraA08t32800Z Brassica rapa HOM05D004614 ORTHO05D005339 2.0e-50 202.6 111 82.9
Carub.0001s3422 Capsella rubella HOM05D004614 ORTHO05D005339 2.0e-50 202.6 111 82.9
Sp1g32010 Schrenkiella parvula HOM05D004614 ORTHO05D005339 2.0e-50 202.6 111 82.9
TWI56G0787 Tripterygium wilfordii HOM05D004614 ORTHO05D005339 2.0e-50 202.6 111 83.8
MELO3C026543.2 Cucumis melo HOM05D004614 ORTHO05D005339 2.6e-50 202.2 122 79.5
THA.LOC104813167 Tarenaya hassleriana HOM05D004614 ORTHO05D005339 2.6e-50 202.2 111 84.7
QL02p013984 Quercus lobata HOM05D004614 ORTHO05D005339 5.7e-50 201.1 111 82.9
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 5.7e-50 201.1 111 82.9
Cc10_g00730 Coffea canephora HOM05D004614 ORTHO05D005339 1.7e-49 199.5 111 83.8
Potri.002G011300 Populus trichocarpa HOM05D004614 ORTHO05D005339 2.8e-49 198.7 130 74.6
Aqoxy6G01739 Aquilegia oxysepala HOM05D004614 ORTHO05D005339 3.7e-49 198.4 111 80.2
Peaxi162Scf00064g01132 Petunia axillaris HOM05D004614 ORTHO05D005339 3.7e-49 198.4 127 74.0
Thhalv10004272m.g Eutrema salsugineum HOM05D004614 ORTHO05D005339 4.8e-49 198.0 111 82.0
TAR376G0430 Trochodendron aralioides HOM05D004614 ORTHO05D005339 4.8e-49 198.0 132 69.7
Sed0024410 Sechium edule HOM05D004614 ORTHO05D005339 8.2e-49 197.2 111 81.1
Hma1.2p1_0507F.1_g168400 Hydrangea macrophylla HOM05D004614 ORTHO05D005339 1.8e-48 196.1 111 82.0
HPP92_020707 Vanilla planifolia HOM05D004614 ORTHO05D005339 1.8e-48 196.1 112 78.6
DCAR_016768 Daucus carota HOM05D004614 ORTHO05D005339 2.4e-48 195.7 111 82.0
Lj1g0005022 Lotus japonicus HOM05D004614 ORTHO05D005339 4.1e-48 194.9 111 81.1
Oeu056211.1 Olea europaea HOM05D004614 ORTHO05D005339 5.3e-48 194.5 106 84.9
unitig_82.g27116 Utricularia gibba HOM05D004614 ORTHO05D005339 9.1e-48 193.7 111 78.4
Ca_15438_v3 Cicer arietinum L. HOM05D004614 ORTHO05D005339 1.6e-47 193.0 130 73.1
Peaxi162Scf00893g00434 Petunia axillaris HOM05D004614 ORTHO05D005339 1.6e-47 193.0 105 86.7
Duzib093G0152 Durio zibethinus HOM05D004614 ORTHO05D005339 2.6e-47 192.2 131 71.8
Phvul.009G010200 Phaseolus vulgaris HOM05D004614 ORTHO05D005339 5.9e-47 191.0 125 74.4
Glyma.04G018400 Glycine max HOM05D004614 ORTHO05D005339 7.7e-47 190.7 123 74.0
Ah.00g000370 Amaranthus hybridus HOM05D004614 ORTHO05D005339 1.7e-46 189.5 130 76.9
Nn5g30931 Nelumbo nucifera HOM05D004614 ORTHO05D005339 2.2e-46 189.1 136 67.6
TPR.G38127 Trifolium pratense HOM05D004614 ORTHO05D005339 2.9e-46 188.7 123 73.2
VMungo1309G2703 Vigna mungo HOM05D004614 ORTHO05D005339 2.9e-46 188.7 129 72.1
Glyma.06G018700 Glycine max HOM05D004614 ORTHO05D005339 8.5e-46 187.2 107 80.4
Psat5g011520 Pisum sativum HOM05D004614 ORTHO05D005339 1.1e-45 186.8 123 71.5
Gohir.A01G106500 Gossypium hirsutum HOM05D004614 ORTHO05D005339 2.7e-44 182.2 111 76.6
PGR031G0851 Punica granatum HOM05D004614 ORTHO05D005339 2.7e-44 182.2 111 81.1
Medtr3g115210 Medicago truncatula HOM05D004614 ORTHO05D005339 3.6e-44 181.8 128 70.3
CSS0048285 Camellia sinensis var. sinensis HOM05D004614 ORTHO05D005339 4.7e-44 181.4 111 80.2
Solyc12g094570.1 Solanum lycopersicum HOM05D004614 ORTHO05D005339 2.3e-43 179.1 107 76.6
Sopen12g031480 Solanum pennellii HOM05D004614 ORTHO05D005339 2.3e-43 179.1 107 76.6
RcHm_v2.0_Chr6g0304201 Rosa chinensis HOM05D004614 ORTHO05D005339 5.2e-43 177.9 106 78.3
TAR625G0334 Trochodendron aralioides HOM05D004614 ORTHO05D005339 8.8e-43 177.2 111 77.5
Lj4A805T24 Lonicera japonica HOM05D004614 ORTHO05D005339 2.0e-42 176.0 91 85.7
Lalb_Chr11g0061661 Lupinus albus HOM05D004614 ORTHO05D005339 3.4e-42 175.3 107 75.7
Thecc.08G058000 Theobroma cacao HOM05D004614 ORTHO05D005339 4.8e-41 171.4 131 67.2
CsaV3_6G031620 Cucumis sativus L. HOM05D004614 ORTHO05D005339 6.3e-41 171.0 111 77.5
Manes.05G134900 Manihot esculenta HOM05D004614 ORTHO05D005339 3.1e-40 168.7 133 67.7
vmacro04401 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 3.1e-40 168.7 110 76.4
CANSAT25G1550 Cannabis sativa HOM05D004614 ORTHO05D005339 4.1e-40 168.3 111 76.6
Prupe.1G354900 Prunus persica HOM05D004614 ORTHO05D005339 4.1e-40 168.3 111 76.6
Hund01763 Selenicereus undatus HOM05D004614 ORTHO05D005339 4.1e-40 168.3 130 73.8
TWI36G0356 Tripterygium wilfordii HOM05D004614 ORTHO05D005339 1.2e-39 166.8 111 75.7
FvH4_2g37530 Fragaria vesca HOM05D004614 ORTHO05D005339 1.6e-39 166.4 105 74.3
FAN15G3067 Fragaria x ananassa HOM05D004614 ORTHO05D005339 1.6e-39 166.4 105 74.3
FAN20G3039 Fragaria x ananassa HOM05D004614 ORTHO05D005339 1.6e-39 166.4 105 74.3
FAN27G1062 Fragaria x ananassa HOM05D004614 ORTHO05D005339 1.6e-39 166.4 105 74.3
Ciclev10001231m.g Citrus clementina HOM05D004614 ORTHO05D005339 2.0e-39 166.0 111 74.8
MD08G1002900 Malus domestica HOM05D004614 ORTHO05D005339 2.0e-39 166.0 110 76.4
MD15G1002600 Malus domestica HOM05D004614 ORTHO05D005339 2.0e-39 166.0 110 76.4
Nn6g31744 Nelumbo nucifera HOM05D004614 ORTHO05D005339 2.7e-39 165.6 130 67.7
Pp3c7_400 Physcomitrium patens HOM05D004614 ORTHO05D005339 2.7e-39 165.6 111 66.7
ECA232G3530 Erigeron canadensis HOM05D004614 ORTHO05D005339 3.5e-39 165.2 112 75.0
SGA_v2.0_scaffold275G46591 Striga asiatica HOM05D004614 ORTHO05D005339 1.3e-38 163.3 111 74.8
Actinidia29786 Actinidia chinensis HOM05D004614 ORTHO05D005339 1.7e-38 162.9 111 74.8
Eucgr.F03550 Eucalyptus grandis HOM05D004614 ORTHO05D005339 2.2e-38 162.5 111 73.9
CDE02G2145 Ceratophyllum demersum HOM05D004614 ORTHO05D005339 5.0e-38 161.4 105 75.2
GSVIVG01008677001 Vitis vinifera HOM05D004614 ORTHO05D005339 5.0e-38 161.4 107 76.6
Dinv25909 Davidia involucrata HOM05D004614 ORTHO05D005339 1.1e-37 160.2 111 71.2
Lsat_1_v5_gn_9_45021 Lactuca sativa HOM05D004614 ORTHO05D005339 1.1e-37 160.2 112 73.2
SMO169G0316 Selaginella moellendorffii HOM05D004614 ORTHO05D005339 4.2e-37 158.3 111 65.8
Mapoly0189s0007 Marchantia polymorpha HOM05D004614 ORTHO05D005339 5.5e-37 157.9 106 67.0
PGSC0003DMG400029318 Solanum tuberosum HOM05D004614 ORTHO05D005339 5.5e-37 157.9 104 74.0
CAN.G311.111 Capsicum annuum HOM05D004614 ORTHO05D005339 1.6e-36 156.4 111 72.1
PGSC0003DMG400009975 Solanum tuberosum HOM05D004614 ORTHO05D005339 1.6e-36 156.4 111 70.3
CiPaw.08G072400 Carya illinoinensis HOM05D004614 ORTHO05D005339 4.7e-36 154.8 111 70.3
Solyc04g082290.4 Solanum lycopersicum HOM05D004614 ORTHO05D005339 6.1e-36 154.5 111 69.4
Sopen04g035910 Solanum pennellii HOM05D004614 ORTHO05D005339 6.1e-36 154.5 111 69.4
COL.COLO4_04001 Corchorus olitorius HOM05D004614 ORTHO05D005339 8.0e-36 154.1 125 64.8
Cpa.g.sc26.206 Carica papaya HOM05D004614 ORTHO05D005339 1.8e-35 152.9 126 65.1
unitig_748.g7709 Utricularia gibba HOM05D004614 ORTHO05D005339 2.6e-34 149.1 110 65.5
Potri.005G249700 Populus trichocarpa HOM05D004614 ORTHO05D005339 4.4e-34 148.3 107 71.0
CiPaw.07G139400 Carya illinoinensis HOM05D004614 ORTHO05D005339 1.3e-33 146.7 91 79.1
Os03g0133300 Oryza sativa ssp. japonica HOM05D004614 ORTHO05D005339 2.8e-33 145.6 105 70.5
Sabra05G0193200 Salix brachista HOM05D004614 ORTHO05D005339 2.8e-33 145.6 106 70.8
Duzib116G0199 Durio zibethinus HOM05D004614 ORTHO05D005339 4.9e-33 144.8 105 69.5
Rhsim07G0254700 Rhododendron simsii HOM05D004614 ORTHO05D005339 6.3e-33 144.4 127 60.6
Pp3c11_25930 Physcomitrium patens HOM05D004614 ORTHO05D005339 8.3e-33 144.1 94 67.0
Actinidia37970 Actinidia chinensis HOM05D004614 ORTHO05D005339 1.4e-32 143.3 105 70.5
HanXRQChr05g0146811 Helianthus annuus HOM05D004614 ORTHO05D005339 2.4e-32 142.5 122 63.1
ClCG08G009480 Citrullus lanatus HOM05D004614 ORTHO05D005339 3.1e-32 142.1 68 92.6
MD07G1011800 Malus domestica HOM05D004614 ORTHO05D005339 3.1e-32 142.1 80 83.8
HanXRQChr14g0428261 Helianthus annuus HOM05D004614 ORTHO05D005339 5.4e-32 141.4 110 65.5
Gohir.A05G179800 Gossypium hirsutum HOM05D004614 ORTHO05D005339 1.2e-31 140.2 111 66.7
Gorai.009G188200 Gossypium raimondii HOM05D004614 ORTHO05D005339 1.2e-31 140.2 111 66.7
Lsat_1_v5_gn_2_6461 Lactuca sativa HOM05D004614 ORTHO05D005339 5.0e-30 134.8 107 64.5
Duzib041G0192 Durio zibethinus HOM05D004614 ORTHO05D005339 8.6e-30 134.0 91 72.5
PSO541G0908 Papaver somniferum HOM05D004614 ORTHO05D005339 3.3e-29 132.1 110 61.8
PSO675G0524 Papaver somniferum HOM05D004614 ORTHO05D005339 3.3e-29 132.1 110 61.8
ATR0661G410 Amborella trichopoda HOM05D004614 ORTHO05D005339 5.2e-27 124.8 61 88.5
Rhsim06G0008000 Rhododendron simsii HOM05D004614 ORTHO05D005339 5.2e-27 124.8 111 56.8
Gorai.002G118400 Gossypium raimondii HOM05D004614 ORTHO05D005339 8.9e-27 124.0 62 83.9
Gohir.D01G093000 Gossypium hirsutum HOM05D004614 ORTHO05D005339 4.4e-26 121.7 62 82.3
HanXRQChr15g0492731 Helianthus annuus HOM05D004614 ORTHO05D005339 9.8e-26 120.6 79 72.2
SEGI_03937 Sequoiadendron giganteum HOM05D004614 ORTHO05D005339 9.8e-26 120.6 62 83.9
Lj4A12T78 Lonicera japonica HOM05D004614 ORTHO05D005339 1.1e-24 117.1 57 91.2
MD11G1103700 Malus domestica HOM05D004614 ORTHO05D005339 4.6e-23 111.7 55 89.1
Phvul.L001638 Phaseolus vulgaris HOM05D004614 ORTHO05D005339 5.9e-23 111.3 57 89.5
Nitab4.5_0010763g0030 Nicotiana tabacum HOM05D004614 ORTHO05D005339 2.3e-22 109.4 62 79.0
CBR_g19275 Chara braunii HOM05D006445 ORTHO05D008030 6.1e-20 101.3 92 47.8
Manes.18G005900 Manihot esculenta HOM05D004614 ORTHO05D005339 8.0e-20 100.9 78 69.2
AUR62043351 Chenopodium quinoa HOM05D004614 ORTHO05D005339 2.0e-18 96.3 67 68.7
Nitab4.5_0000699g0050 Nicotiana tabacum HOM05D004614 ORTHO05D005339 2.6e-18 95.9 55 74.5
Ciclev10004554m.g Citrus clementina HOM05D006445 ORTHO05D008030 5.4e-16 88.2 100 48.0
Dinv31932 Davidia involucrata HOM05D004614 ORTHO05D005339 5.4e-16 88.2 53 77.4
ClCG08G009540 Citrullus lanatus HOM05D004614 ORTHO05D005339 7.0e-16 87.8 65 67.7
Cre05.g248000 Chlamydomonas reinhardtii HOM05D004614 ORTHO05D005339 3.0e-14 82.4 81 44.4
TAR381G0464 Trochodendron aralioides HOM05D004614 ORTHO05D005339 4.3e-13 78.6 73 61.6
Hund05117 Selenicereus undatus HOM05D004614 ORTHO05D005339 2.8e-12 75.9 49 83.7
Nitab4.5_0000588g0160 Nicotiana tabacum HOM05D004614 ORTHO05D005339 6.2e-12 74.7 112 43.8
Zm00001eb200610 Zea mays HOM05D006445 ORTHO05D008030 1.1e-11 73.9 97 40.2
Gohir.D05G182900 Gossypium hirsutum HOM05D004614 ORTHO05D005339 1.4e-11 73.6 40 85.0
Cc03_g04450 Coffea canephora HOM05D006445 ORTHO05D008030 2.3e-11 72.8 71 47.9
Atru.chr13.150 Acer truncatum HOM05D004614 ORTHO05D005339 8.9e-11 70.9 40 80.0
arahy.Tifrunner.gnm1.ann1.7DZ9XI Arachis hypogaea HOM05D004614 ORTHO05D005339 1.5e-10 70.1 114 42.1
Peaxi162Scf00447g00052 Petunia axillaris HOM05D004614 ORTHO05D005339 3.4e-10 68.9 81 45.7
TAR549G0008 Trochodendron aralioides HOM05D006445 ORTHO05D008030 3.4e-10 68.9 70 50.0
TAR633G2087 Trochodendron aralioides HOM05D006445 ORTHO05D008030 3.4e-10 68.9 70 50.0
PGSC0003DMG400033656 Solanum tuberosum HOM05D004614 ORTHO05D005339 5.8e-10 68.2 42 73.8
arahy.Tifrunner.gnm1.ann1.MYP9FH Arachis hypogaea HOM05D004614 ORTHO05D005339 7.5e-10 67.8 114 41.2
Os11g0586300 Oryza sativa ssp. japonica HOM05D006445 ORTHO05D008030 1.3e-09 67.0 59 49.2
MCO11G687 Micromonas commoda HOM05D004614 ORTHO05D005339 1.6e-07 60.1 123 32.5
Nitab4.5_0006949g0050 Nicotiana tabacum HOM05D004614 ORTHO05D005339 3.5e-07 58.9 31 80.6
CSS0044612 Camellia sinensis var. sinensis HOM05D004614 ORTHO05D005339 5.1e-06 55.1 28 89.3


User provided reference genes

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