Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 5.7e-250 867.1 427 100.0
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 2.3e-222 775.4 427 89.7
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 1.6e-215 752.7 440 85.2
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 1.6e-207 726.1 386 89.4
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 3.2e-184 648.7 406 77.8
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 3.3e-181 638.6 417 73.4
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 5.6e-181 637.9 422 73.2
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.1e-180 636.0 424 73.3
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 1.4e-179 633.3 428 72.2
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 5.8e-178 627.9 419 72.6
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 7.6e-178 627.5 411 73.7
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 3.8e-177 625.2 433 71.1
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 6.5e-177 624.4 396 75.5
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 6.5e-177 624.4 422 72.0
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.5e-176 622.5 429 71.1
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 4.2e-176 621.7 430 71.9
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 5.5e-176 621.3 430 70.7
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 7.1e-176 620.9 425 70.6
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 9.3e-176 620.5 425 71.5
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.1e-175 619.4 410 72.4
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 2.7e-175 619.0 419 70.9
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 3.5e-175 618.6 423 71.6
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 4.6e-175 618.2 426 70.2
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 7.9e-175 617.5 428 69.9
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 7.9e-175 617.5 424 70.5
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 1.0e-174 617.1 426 71.1
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 1.0e-174 617.1 432 70.6
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.0e-174 617.1 427 70.7
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.3e-174 616.7 428 70.3
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 1.3e-174 616.7 394 74.1
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.0e-174 615.5 427 70.5
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 3.9e-174 615.1 422 71.8
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.9e-174 615.1 427 70.5
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 5.1e-174 614.8 423 71.2
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 5.1e-174 614.8 420 71.4
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 3.3e-173 612.1 385 75.8
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 7.4e-173 610.9 410 71.7
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 1.6e-172 609.8 396 74.7
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 1.1e-171 607.1 396 74.5
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 1.8e-171 606.3 403 71.0
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 1.8e-171 606.3 428 70.1
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 3.1e-171 605.5 424 70.0
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 9.0e-171 604.0 428 70.1
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 1.2e-170 603.6 417 68.6
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 2.0e-170 602.8 426 70.0
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 2.6e-170 602.4 396 73.2
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 3.4e-170 602.1 424 70.0
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 3.4e-170 602.1 424 69.3
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 5.9e-170 601.3 427 68.6
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 7.7e-170 600.9 423 70.0
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.7e-169 599.7 429 68.5
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 1.1e-168 597.0 427 68.6
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 1.9e-168 596.3 397 72.8
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 3.2e-168 595.5 415 69.6
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 3.2e-168 595.5 404 71.0
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 3.2e-168 595.5 404 71.0
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 5.5e-168 594.7 417 69.3
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 7.2e-168 594.3 431 67.5
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 9.4e-168 594.0 417 69.3
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 1.6e-167 593.2 398 71.4
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 2.7e-167 592.4 431 68.2
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 3.6e-167 592.0 425 69.2
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 3.6e-167 592.0 416 69.2
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 6.1e-167 591.3 422 68.5
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 7.9e-167 590.9 397 71.8
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 7.9e-167 590.9 397 71.8
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 1.0e-166 590.5 397 70.8
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 5.1e-166 588.2 430 66.0
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 6.7e-166 587.8 409 68.9
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 8.8e-166 587.4 415 68.9
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.9e-165 586.3 426 67.6
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 3.3e-165 585.5 439 65.1
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 8.2e-164 580.9 433 67.2
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 8.2e-164 580.9 433 67.2
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 8.2e-164 580.9 392 71.4
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 1.8e-163 579.7 408 69.1
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 2.4e-163 579.3 421 69.1
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 1.7e-161 573.2 388 71.6
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 2.2e-161 572.8 422 66.8
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 1.1e-160 570.5 472 61.9
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 3.2e-160 568.9 422 67.5
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 1.2e-159 567.0 422 67.1
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 7.9e-159 564.3 414 65.9
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 7.9e-159 564.3 387 71.1
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 5.1e-158 561.6 385 70.1
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 3.3e-157 558.9 389 70.4
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 4.4e-157 558.5 428 65.0
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 5.7e-157 558.1 423 64.1
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.6e-154 549.3 415 65.5
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 3.4e-154 548.9 371 70.1
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.3e-153 547.0 468 60.0
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 2.2e-153 546.2 431 62.4
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 3.7e-148 528.9 345 72.5
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.8e-147 526.6 419 63.5
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 2.0e-146 523.1 353 72.0
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 2.2e-145 519.6 330 76.4
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 1.5e-144 516.9 396 66.2
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 1.6e-143 513.5 382 65.4
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 8.0e-143 511.1 331 71.6
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 1.8e-142 510.0 413 58.4
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 9.7e-141 504.2 345 71.6
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 4.5e-138 495.4 418 59.1
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 2.5e-136 489.6 400 60.8
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 4.2e-136 488.8 394 62.4
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 1.0e-134 484.2 388 60.8
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 1.8e-134 483.4 388 59.8
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 3.3e-128 462.6 376 60.9
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 2.3e-126 456.4 300 70.7
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 2.6e-125 453.0 426 55.9
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 5.7e-125 451.8 410 56.1
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 4.9e-124 448.7 348 61.8
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.1e-123 446.0 348 61.2
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 4.5e-122 442.2 348 60.9
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 5.6e-112 408.7 280 71.1
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 8.9e-110 401.4 282 71.6
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 1.2e-103 380.9 245 72.7
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 4.6e-98 362.5 329 53.2
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 5.1e-97 359.0 304 55.9
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 1.7e-92 344.0 399 45.4
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 4.2e-91 339.3 274 59.9
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 2.0e-85 320.5 205 68.3
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 1.3e-76 291.2 219 68.5
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 3.3e-72 276.6 322 44.4
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.1e-67 261.5 243 51.4
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 1.1e-67 261.5 217 59.0
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 3.2e-67 260.0 227 58.1
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 3.9e-65 253.1 231 55.8
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 1.8e-62 244.2 169 65.1
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 3.0e-57 226.9 142 76.8
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 1.8e-49 201.1 155 69.7
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 7.4e-40 169.1 125 60.8
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.4e-38 164.1 110 64.5
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 7.0e-38 162.5 122 68.9
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 9.1e-38 162.2 152 56.6
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 7.7e-37 159.1 127 55.1
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 6.1e-34 149.4 156 55.1
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 2.1e-26 124.4 186 40.3
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 2.7e-26 124.0 390 27.2
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 6.3e-23 112.8 237 32.5
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 3.8e-20 103.6 69 71.0
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 1.5e-19 101.7 63 69.8
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 2.8e-15 87.4 51 70.6
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 3.7e-15 87.0 58 69.0
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 6.1e-10 69.7 54 63.0


User provided reference genes

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